Wall clock time and date at job start Tue Mar 31 2020 03:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34940 * 126.04117 * 2 1 4 4 C 1.35321 * 107.74729 * 179.74995 * 3 2 1 5 5 S 1.76205 * 126.03933 * 180.27582 * 4 3 2 6 6 O 1.42098 * 106.40351 * 23.70305 * 5 4 3 7 7 O 1.42097 * 106.40046 * 156.62847 * 5 4 3 8 8 N 1.65607 * 107.21635 * 270.16429 * 5 4 3 9 9 C 1.46959 * 120.59436 * 269.72568 * 8 5 4 10 10 C 1.53802 * 108.40259 * 124.75653 * 9 8 5 11 11 N 1.46969 * 108.58015 * 49.63444 * 10 9 8 12 12 C 1.36938 * 120.59145 * 124.66819 * 11 10 9 13 13 H 1.08001 * 119.99524 * 208.19296 * 12 11 10 14 14 C 1.38807 * 120.00507 * 28.19262 * 12 11 10 15 15 N 1.31625 * 119.99656 * 17.60132 * 14 12 11 16 16 Si 1.86800 * 120.00361 * 197.60990 * 14 12 11 17 17 H 1.48499 * 109.47052 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47468 * 119.99872 * 16 14 12 19 19 H 1.48503 * 109.47064 * 239.99713 * 16 14 12 20 20 C 1.46961 * 118.81339 * 304.65063 * 11 10 9 21 21 C 1.46964 * 120.59068 * 89.99964 * 8 5 4 22 22 C 1.39870 * 107.91827 * 0.39568 * 4 3 2 23 23 N 1.30836 * 108.20343 * 359.59590 * 22 4 3 24 24 H 1.09004 * 109.47075 * 269.97996 * 1 2 3 25 25 H 1.09002 * 109.47101 * 29.97288 * 1 2 3 26 26 H 1.08999 * 109.47134 * 149.97259 * 1 2 3 27 27 H 1.08000 * 126.12486 * 359.97438 * 3 2 1 28 28 H 1.09001 * 109.60511 * 244.54411 * 9 8 5 29 29 H 1.09005 * 109.60921 * 5.04658 * 9 8 5 30 30 H 1.08998 * 109.74432 * 289.84540 * 10 9 8 31 31 H 1.09001 * 109.67718 * 169.38079 * 10 9 8 32 32 H 0.97005 * 119.99761 * 179.97438 * 15 14 12 33 33 H 1.09003 * 109.60636 * 295.47938 * 20 11 10 34 34 H 1.08991 * 109.75394 * 175.04976 * 20 11 10 35 35 H 1.09001 * 109.61383 * 354.94705 * 21 8 5 36 36 H 1.09002 * 109.60913 * 115.46175 * 21 8 5 37 37 H 1.07998 * 125.89430 * 179.86676 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0911 0.0000 4 6 3.5437 0.6664 0.0056 5 16 4.9752 1.6938 0.0149 6 8 4.5707 2.9407 0.5633 7 8 6.0281 0.9100 0.5594 8 7 5.3788 1.9864 -1.5644 9 6 6.3033 1.0943 -2.2778 10 6 5.6090 0.5981 -3.5573 11 7 5.0535 1.7580 -4.2686 12 6 5.3873 2.0000 -5.5745 13 1 5.3806 3.0107 -5.9551 14 6 5.7341 0.9464 -6.4090 15 7 5.4191 -0.2876 -6.0765 16 14 6.6481 1.2796 -8.0037 17 1 6.8813 2.7394 -8.1447 18 1 7.9520 0.5691 -7.9848 19 1 5.8371 0.7954 -9.1495 20 6 4.1333 2.6533 -3.5536 21 6 4.8233 3.1464 -2.2756 22 6 3.5346 -0.7323 0.0000 23 7 2.2891 -1.1329 0.0001 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5143 27 1 1.9282 2.1192 -0.0004 28 1 7.2101 1.6400 -2.5385 29 1 6.5546 0.2445 -1.6430 30 1 4.8052 -0.0905 -3.2967 31 1 6.3331 0.0905 -4.1946 32 1 5.6612 -1.0239 -6.6598 33 1 3.2244 2.1111 -3.2926 34 1 3.8824 3.5050 -4.1857 35 1 4.0969 3.6522 -1.6395 36 1 5.6271 3.8349 -2.5363 37 1 4.4053 -1.3712 0.0004 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103882146.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:08 Heat of formation + Delta-G solvation = 17.011601 kcal Electronic energy + Delta-G solvation = -23339.742594 eV Core-core repulsion = 19860.198825 eV Total energy + Delta-G solvation = -3479.543769 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.27406 -39.13309 -38.24927 -36.84791 -35.53321 -34.37828 -32.88189 -31.76260 -31.52613 -28.15993 -27.94015 -24.98786 -24.42701 -23.03071 -22.31877 -21.52408 -19.93498 -19.24448 -18.69968 -17.82858 -16.94206 -16.75004 -16.60263 -16.51176 -15.56659 -15.44533 -15.35131 -15.30594 -14.99731 -14.55759 -14.16772 -13.77395 -13.69098 -13.55232 -13.43885 -13.16808 -12.93370 -12.87453 -12.68224 -12.60145 -12.42103 -12.06578 -11.94898 -11.80629 -11.72654 -11.38189 -10.66937 -10.57074 -10.31272 -10.01872 -8.59129 -7.83568 -5.29950 -0.47036 0.56322 1.20529 1.48164 1.48702 1.52206 1.61323 2.16215 2.54297 2.88649 3.18534 3.30860 3.66462 3.70114 3.75492 3.93858 4.11565 4.35940 4.37143 4.39687 4.56357 4.56793 4.63671 4.64416 4.73303 4.79891 4.95266 5.18022 5.28185 5.31440 5.37744 5.66682 5.68287 5.81192 5.84540 6.34578 6.41630 7.17089 7.88070 8.40379 9.21248 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.018486 B = 0.005204 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.291289 B = 5379.548309 C = 5990.984927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.363 5.363 3 C 0.182 3.818 4 C -0.830 4.830 5 S 2.743 3.257 6 O -0.979 6.979 7 O -0.988 6.988 8 N -0.990 5.990 9 C 0.109 3.891 10 C 0.166 3.834 11 N -0.607 5.607 12 C -0.257 4.257 13 H 0.071 0.929 14 C -0.049 4.049 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.266 1.266 18 H -0.292 1.292 19 H -0.297 1.297 20 C 0.129 3.871 21 C 0.110 3.890 22 C 0.122 3.878 23 N -0.325 5.325 24 H 0.101 0.899 25 H 0.123 0.877 26 H 0.093 0.907 27 H 0.228 0.772 28 H 0.069 0.931 29 H 0.093 0.907 30 H 0.001 0.999 31 H 0.066 0.934 32 H 0.249 0.751 33 H 0.018 0.982 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.074 0.926 37 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 4.489 12.633 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.140 5.140 3 C 0.027 3.973 4 C -0.930 4.930 5 S 2.833 3.167 6 O -0.969 6.969 7 O -0.978 6.978 8 N -0.828 5.828 9 C -0.018 4.018 10 C 0.039 3.961 11 N -0.330 5.330 12 C -0.387 4.387 13 H 0.088 0.912 14 C -0.245 4.245 15 N -0.581 5.581 16 Si 0.793 3.207 17 H -0.190 1.190 18 H -0.219 1.219 19 H -0.224 1.224 20 C 0.002 3.998 21 C -0.016 4.016 22 C -0.067 4.067 23 N -0.145 5.145 24 H 0.120 0.880 25 H 0.142 0.858 26 H 0.112 0.888 27 H 0.244 0.756 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.019 0.981 31 H 0.085 0.915 32 H 0.058 0.942 33 H 0.036 0.964 34 H 0.091 0.909 35 H 0.128 0.872 36 H 0.092 0.908 37 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -9.116 3.628 13.272 16.505 hybrid contribution 0.430 -0.248 -1.469 1.551 sum -8.686 3.381 11.803 15.039 Atomic orbital electron populations 1.22487 0.70938 1.06772 1.05703 1.49429 1.08836 1.03333 1.52428 1.23016 0.88560 0.95583 0.90122 1.31624 1.17302 1.08843 1.35187 1.00162 0.72620 0.72345 0.71527 1.93498 1.84276 1.42379 1.76767 1.93495 1.54827 1.72422 1.77066 1.57435 1.58128 1.36413 1.30846 1.22102 0.91914 0.93212 0.94540 1.21020 0.95775 0.88479 0.90847 1.44165 1.51060 1.28767 1.09038 1.19561 1.39773 0.92348 0.87011 0.91173 1.25740 1.02426 0.95560 1.00744 1.70181 1.49423 0.99138 1.39345 0.85266 0.77887 0.77959 0.79638 1.19012 1.21888 1.22393 1.21433 0.91344 0.93982 0.93031 1.22008 0.98966 0.86290 0.94345 1.23752 0.96136 0.92842 0.93932 1.77341 1.02166 1.09314 1.25683 0.88032 0.85849 0.88831 0.75582 0.91249 0.88909 0.98124 0.91537 0.94207 0.96366 0.90912 0.87180 0.90807 0.78097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 11.47 127.77 1.47 2.43 16 2 N -0.36 -8.39 4.01 -369.56 -1.48 -9.88 16 3 C 0.18 4.12 11.24 83.54 0.94 5.06 16 4 C -0.83 -23.41 6.17 21.99 0.14 -23.27 16 5 S 2.74 83.21 5.84 -56.49 -0.33 82.88 16 6 O -0.98 -30.48 16.54 -128.00 -2.12 -32.60 16 7 O -0.99 -34.65 16.55 -128.00 -2.12 -36.77 16 8 N -0.99 -32.17 3.26 -511.45 -1.67 -33.84 16 9 C 0.11 4.00 6.58 86.56 0.57 4.57 16 10 C 0.17 7.65 5.53 86.56 0.48 8.13 16 11 N -0.61 -28.71 2.97 -697.37 -2.07 -30.78 16 12 C -0.26 -13.42 9.58 84.03 0.80 -12.61 16 13 H 0.07 3.55 7.89 -2.91 -0.02 3.52 16 14 C -0.05 -2.66 4.90 84.86 0.42 -2.25 16 15 N -0.93 -53.85 11.20 21.65 0.24 -53.61 16 16 Si 0.96 43.68 29.59 68.60 2.03 45.71 16 17 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 18 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 19 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 20 C 0.13 4.79 6.67 86.42 0.58 5.37 16 21 C 0.11 3.36 6.55 86.42 0.57 3.92 16 22 C 0.12 3.68 11.81 85.24 1.01 4.69 16 23 N -0.33 -9.79 12.58 -57.03 -0.72 -10.50 16 24 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.23 3.13 8.06 -2.91 -0.02 3.10 16 28 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 29 H 0.09 3.11 7.08 -2.38 -0.02 3.09 16 30 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 31 H 0.07 3.48 5.98 -2.39 -0.01 3.47 16 32 H 0.25 13.96 8.31 -92.70 -0.77 13.19 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 2.54 7.94 -2.39 -0.02 2.53 16 35 H 0.11 2.64 7.09 -2.39 -0.02 2.62 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.20 5.41 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -74.35 321.76 -0.19 -74.55 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.08 Total: 8.79 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 6.96 Total: -3.96 kcal Atomic # 7 Polarization: -132.92 SS G_CDS: -5.69 Total: -138.61 kcal Atomic # 8 Polarization: -65.13 SS G_CDS: -4.24 Total: -69.37 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: 83.21 SS G_CDS: -0.33 Total: 82.88 kcal Total: -74.35 -0.19 -74.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103882146.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.558 kcal (2) G-P(sol) polarization free energy of solvation -74.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds