Wall clock time and date at job start Tue Mar 31 2020 03:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47320 * 2 1 4 4 C 1.46499 * 119.99537 * 269.99999 * 3 2 1 5 5 C 1.50697 * 109.46949 * 269.99553 * 4 3 2 6 6 H 1.08004 * 120.00186 * 0.02562 * 5 4 3 7 7 C 1.37881 * 120.00081 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00096 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00103 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46956 * 89.99765 * 9 7 5 11 11 H 1.48497 * 109.47226 * 210.00189 * 9 7 5 12 12 H 1.48501 * 109.47027 * 329.99834 * 9 7 5 13 13 C 1.34777 * 120.00264 * 89.99349 * 3 2 1 14 14 O 1.21283 * 119.99750 * 180.02562 * 13 3 2 15 15 C 1.50702 * 119.99928 * 0.28128 * 13 3 2 16 16 N 1.46491 * 109.46957 * 179.72354 * 15 13 3 17 17 N 1.40175 * 126.29441 * 269.68755 * 16 15 13 18 18 C 1.30190 * 108.03241 * 179.88156 * 17 16 15 19 19 S 1.76195 * 125.67421 * 180.09741 * 18 17 16 20 20 C 1.80998 * 100.00188 * 0.32895 * 19 18 17 21 21 N 1.37647 * 108.64302 * 0.37979 * 18 17 16 22 22 H 0.97003 * 125.83229 * 179.79254 * 21 18 17 23 23 C 1.34786 * 108.33946 * 359.75626 * 21 18 17 24 24 O 1.21838 * 126.21434 * 180.02562 * 23 21 18 25 25 H 1.09004 * 109.46895 * 60.00075 * 1 2 3 26 26 H 1.08992 * 109.47180 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47106 * 300.00561 * 1 2 3 28 28 H 1.08994 * 109.47354 * 239.99891 * 2 1 3 29 29 H 1.09001 * 109.47139 * 119.99465 * 2 1 3 30 30 H 1.09001 * 109.47567 * 29.99407 * 4 3 2 31 31 H 1.09005 * 109.47076 * 149.99913 * 4 3 2 32 32 H 0.96991 * 119.99957 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46965 * 299.72211 * 15 13 3 34 34 H 1.08994 * 109.46990 * 59.72065 * 15 13 3 35 35 H 1.09001 * 109.47148 * 299.99758 * 20 19 18 36 36 H 1.09000 * 109.47118 * 59.99918 * 20 19 18 37 37 H 1.09006 * 109.47117 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2625 2.0717 -1.2688 5 6 3.6858 1.8349 -1.7037 6 1 4.3427 1.2302 -1.0961 7 6 4.1495 2.3903 -2.8775 8 7 3.3498 3.1272 -3.6172 9 14 5.9135 2.0962 -3.4170 10 1 5.9762 0.8756 -4.2605 11 1 6.3931 3.2637 -4.1993 12 1 6.7736 1.9154 -2.2200 13 6 2.2429 2.0167 1.1672 14 8 2.6468 3.1603 1.1671 15 6 1.9977 1.3042 2.4723 16 7 2.3200 2.2001 3.5857 17 7 3.5661 2.3265 4.2149 18 6 3.4547 3.2219 5.1534 19 16 4.7455 3.7457 6.2323 20 6 6.1035 2.7177 5.6201 21 7 2.1591 3.6867 5.1666 22 1 1.8026 4.3577 5.7696 23 6 1.4706 3.0509 4.1979 24 8 0.2947 3.2150 3.9243 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.5818 1.6876 -2.0285 31 1 2.0956 3.1410 -1.1385 32 1 3.6759 3.5175 -4.4431 33 1 0.9499 1.0100 2.5343 34 1 2.6281 0.4167 2.5258 35 1 5.8385 1.6656 5.7246 36 1 6.2853 2.9439 4.5694 37 1 7.0045 2.9241 6.1978 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188166218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:52 Heat of formation + Delta-G solvation = 12.706907 kcal Electronic energy + Delta-G solvation = -22471.738195 eV Core-core repulsion = 18992.007761 eV Total energy + Delta-G solvation = -3479.730434 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.30415 -39.07262 -37.19660 -35.41580 -34.43198 -32.80766 -31.38747 -30.12937 -29.24261 -28.44451 -26.55966 -23.39720 -23.02183 -22.88309 -21.54705 -19.23982 -18.41760 -17.24291 -17.07180 -16.41930 -16.12050 -15.87376 -15.62195 -14.95354 -14.63779 -14.48217 -14.03138 -13.92864 -13.44100 -13.17829 -13.13098 -12.72334 -12.70646 -12.20628 -12.05853 -11.90402 -11.60605 -11.21379 -11.12188 -10.98499 -10.84854 -10.76010 -10.55423 -10.31617 -10.14582 -9.65297 -9.37456 -8.87651 -8.44167 -7.89979 -7.71841 -6.04782 -4.09627 0.67539 1.48310 1.66492 2.03869 2.73260 3.27693 3.29473 3.36069 3.40580 3.59756 3.93186 4.43468 4.50398 4.83614 4.91486 4.93398 5.15639 5.29730 5.31041 5.35827 5.48407 5.53812 5.61141 5.75880 5.98043 6.13289 6.21622 6.47649 6.51456 7.03030 7.42428 7.43318 7.50483 7.91068 8.05939 8.22188 8.33826 8.86602 9.01476 9.55134 11.03440 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.014087 B = 0.004530 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.132532 B = 6178.946510 C = 7479.614425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.103 3.897 3 N -0.593 5.593 4 C 0.247 3.753 5 C -0.526 4.526 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.490 3.510 14 O -0.527 6.527 15 C 0.139 3.861 16 N -0.422 5.422 17 N -0.261 5.261 18 C 0.244 3.756 19 S 0.013 5.987 20 C -0.145 4.145 21 N -0.638 5.638 22 H 0.439 0.561 23 C 0.661 3.339 24 O -0.549 6.549 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.034 0.966 31 H 0.042 0.958 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.986 -5.255 19.951 20.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.021 4.021 3 N -0.326 5.326 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.274 3.726 14 O -0.403 6.403 15 C 0.014 3.986 16 N -0.243 5.243 17 N -0.089 5.089 18 C -0.144 4.144 19 S 0.237 5.763 20 C -0.314 4.314 21 N -0.292 5.292 22 H 0.282 0.718 23 C 0.358 3.642 24 O -0.422 6.422 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.984 -4.462 19.752 20.273 hybrid contribution 0.327 -0.241 -0.948 1.031 sum 1.311 -4.703 18.804 19.427 Atomic orbital electron populations 1.22249 0.96525 1.01615 1.02649 1.21491 0.93736 0.83982 1.02890 1.48244 1.63617 1.13315 1.07401 1.19296 0.96372 0.93664 0.77818 1.21419 0.96853 1.31938 1.06278 0.92448 1.24940 0.97866 0.94890 0.96409 1.69935 1.35726 1.33342 1.14323 0.86493 0.84656 0.77683 0.78565 1.20595 1.21097 1.19928 1.20458 0.79447 0.87479 0.85195 1.90704 1.45045 1.17744 1.86769 1.21500 1.03647 0.91153 0.82321 1.48223 1.06294 1.38600 1.31210 1.77398 1.04752 1.19030 1.07720 1.25784 0.90559 0.97416 1.00648 1.85623 0.99153 1.53359 1.38175 1.23660 0.97961 1.03038 1.06737 1.43459 1.08859 1.41473 1.35431 0.71827 1.16593 0.85547 0.81168 0.80876 1.91121 1.12023 1.69494 1.69563 0.91824 0.91926 0.92934 0.89486 0.91808 0.94767 0.93948 0.92703 0.86240 0.86284 0.88576 0.88251 0.86764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 10.24 37.16 0.38 -1.93 16 2 C 0.10 1.61 5.94 -4.04 -0.02 1.58 16 3 N -0.59 -12.65 2.46 -175.06 -0.43 -13.08 16 4 C 0.25 6.56 5.16 -5.20 -0.03 6.53 16 5 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16 6 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 9 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.49 10.69 7.74 -10.98 -0.09 10.60 16 14 O -0.53 -14.16 16.01 5.55 0.09 -14.07 16 15 C 0.14 2.27 5.41 -5.20 -0.03 2.25 16 16 N -0.42 -7.36 3.11 -66.33 -0.21 -7.56 16 17 N -0.26 -4.09 11.87 30.71 0.36 -3.73 16 18 C 0.24 3.16 8.33 -88.20 -0.73 2.42 16 19 S 0.01 0.11 22.96 -107.50 -2.47 -2.36 16 20 C -0.14 -1.04 10.00 101.05 1.01 -0.03 16 21 N -0.64 -8.54 6.09 -16.34 -0.10 -8.64 16 22 H 0.44 4.31 8.96 -40.82 -0.37 3.95 16 23 C 0.66 11.69 9.01 -86.79 -0.78 10.91 16 24 O -0.55 -11.22 17.90 5.06 0.09 -11.13 16 25 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.70 7.24 -51.93 -0.38 0.32 16 28 H 0.09 1.39 8.07 -51.93 -0.42 0.97 16 29 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 30 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 32 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 33 H 0.12 1.70 7.17 -51.93 -0.37 1.33 16 34 H 0.12 1.58 7.40 -51.93 -0.38 1.19 16 35 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 36 H 0.10 0.88 8.14 -51.92 -0.42 0.46 16 37 H 0.11 0.50 8.14 -51.91 -0.42 0.08 16 LS Contribution 338.81 15.07 5.11 5.11 Total: -1.00 -38.23 338.81 -7.26 -45.49 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.71 Total: 0.49 kcal Atomic # 6 Polarization: 19.39 SS G_CDS: -0.71 Total: 18.68 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: 0.37 Total: -59.14 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: 0.18 Total: -25.20 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 0.11 SS G_CDS: -2.47 Total: -2.36 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.23 -7.26 -45.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188166218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.197 kcal (2) G-P(sol) polarization free energy of solvation -38.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds