Wall clock time and date at job start Tue Mar 31 2020 05:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99693 * 2 1 4 4 H 1.48506 * 109.47141 * 269.99658 * 3 2 1 5 5 H 1.48499 * 109.47579 * 29.99537 * 3 2 1 6 6 H 1.48502 * 109.47298 * 149.99939 * 3 2 1 7 7 C 1.37873 * 119.99877 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99668 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00395 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.01056 * 48.36526 * 9 7 2 11 11 C 1.53937 * 113.73227 * 179.97438 * 9 7 2 12 12 N 1.47955 * 86.18157 * 138.07796 * 11 9 7 13 13 C 1.46896 * 111.00525 * 222.41550 * 12 11 9 14 14 C 1.50703 * 109.47363 * 169.99959 * 13 12 11 15 15 C 1.35082 * 126.07317 * 260.02500 * 14 13 12 16 16 N 1.35036 * 107.98031 * 180.02562 * 15 14 13 17 17 H 0.96999 * 125.93456 * 179.97438 * 16 15 14 18 18 N 1.40079 * 108.13429 * 0.02562 * 16 15 14 19 19 C 1.31618 * 108.10901 * 359.71523 * 18 16 15 20 20 C 1.48421 * 126.03898 * 180.25477 * 19 18 16 21 21 C 1.39758 * 120.53603 * 325.21663 * 20 19 18 22 22 C 1.38415 * 118.31347 * 180.02562 * 21 20 19 23 23 C 1.38312 * 119.28349 * 359.97438 * 22 21 20 24 24 N 1.31888 * 121.02115 * 0.02898 * 23 22 21 25 25 C 1.31744 * 121.85545 * 359.65068 * 24 23 22 26 26 C 1.47961 * 90.76430 * 335.31007 * 12 11 9 27 27 H 0.96994 * 120.00600 * 0.02562 * 1 2 3 28 28 H 0.96704 * 113.99705 * 311.63591 * 10 9 7 29 29 H 1.09005 * 113.75745 * 252.39518 * 11 9 7 30 30 H 1.08996 * 113.76539 * 23.76205 * 11 9 7 31 31 H 1.08998 * 109.47190 * 290.00447 * 13 12 11 32 32 H 1.09002 * 109.47036 * 50.00132 * 13 12 11 33 33 H 1.08004 * 126.01431 * 0.02562 * 15 14 13 34 34 H 1.07999 * 120.84013 * 359.97438 * 21 20 19 35 35 H 1.07997 * 120.35772 * 180.02562 * 22 21 20 36 36 H 1.07998 * 119.48857 * 180.02562 * 23 22 21 37 37 H 1.07997 * 119.70664 * 180.31077 * 25 24 23 38 38 H 1.09002 * 113.75838 * 270.37219 * 26 12 11 39 39 H 1.09002 * 113.86277 * 139.01376 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.2154 -2.5462 -0.9829 11 6 2.1618 -3.7402 0.0005 12 7 1.2179 -4.3106 0.9869 13 6 1.9374 -4.9921 2.0712 14 6 0.9707 -5.3430 3.1727 15 6 0.7924 -4.6573 4.3228 16 7 -0.1581 -5.2910 5.0429 17 1 -0.4881 -5.0196 5.9137 18 7 -0.5839 -6.4091 4.3144 19 6 0.0894 -6.4415 3.1839 20 6 -0.0524 -7.4583 2.1120 21 6 -0.3296 -8.7908 2.4295 22 6 -0.4518 -9.7007 1.3936 23 6 -0.2976 -9.2661 0.0896 24 7 -0.0361 -8.0015 -0.1789 25 6 0.0828 -7.0987 0.7732 26 6 0.7984 -2.9532 1.4000 27 1 -0.4851 0.8399 -0.0004 28 1 -0.3590 -1.7683 -0.9866 29 1 2.1783 -4.2728 -0.9504 30 1 3.1577 -3.5543 0.4025 31 1 2.3962 -5.9030 1.6865 32 1 2.7118 -4.3331 2.4637 33 1 1.3176 -3.7600 4.6151 34 1 -0.4448 -9.1028 3.4570 35 1 -0.6661 -10.7386 1.6012 36 1 -0.3926 -9.9731 -0.7212 37 1 0.2924 -6.0716 0.5136 38 1 1.3956 -2.5369 2.2113 39 1 -0.2741 -2.8551 1.5679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191916380.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:40 Heat of formation + Delta-G solvation = 104.844015 kcal Electronic energy + Delta-G solvation = -24159.470562 eV Core-core repulsion = 20684.124636 eV Total energy + Delta-G solvation = -3475.345926 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -41.24326 -39.60808 -38.85740 -34.48015 -33.28681 -32.09857 -31.93772 -31.06682 -29.77610 -27.77178 -25.57666 -24.98552 -24.04565 -23.26639 -22.27708 -20.67737 -19.63294 -18.58893 -17.67580 -17.12062 -16.84704 -15.94661 -15.39406 -15.15142 -14.98379 -14.69029 -14.07722 -13.96565 -13.67104 -13.60506 -13.50171 -13.04426 -12.90191 -12.41818 -11.99789 -11.78740 -11.49523 -11.40350 -11.17343 -10.89095 -10.67146 -10.49469 -10.34412 -10.15720 -10.01210 -9.51428 -9.39061 -9.23093 -8.70128 -8.60171 -8.32954 -8.10529 -7.79394 -6.25809 -4.36049 0.99885 1.43598 2.03213 2.86978 2.91416 3.18742 3.26618 3.28557 4.05783 4.24999 4.45477 4.74231 4.84050 4.94613 4.97998 5.04158 5.13815 5.26634 5.35017 5.40083 5.68235 5.76104 5.93078 5.97852 6.02111 6.16024 6.16897 6.25006 6.35139 6.40082 6.50657 6.63040 6.74221 6.99820 7.07160 7.20436 7.30592 7.38129 7.67994 7.77031 7.97707 8.01920 8.21871 8.65995 9.34246 9.69214 10.79471 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.019507 B = 0.004328 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.004793 B = 6467.407491 C = 7405.174528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.244 3.756 10 O -0.571 6.571 11 C 0.007 3.993 12 N -0.477 5.477 13 C 0.089 3.911 14 C -0.201 4.201 15 C 0.065 3.935 16 N -0.476 5.476 17 H 0.439 0.561 18 N -0.290 5.290 19 C 0.134 3.866 20 C -0.070 4.070 21 C -0.055 4.055 22 C -0.187 4.187 23 C 0.097 3.903 24 N -0.482 5.482 25 C 0.128 3.872 26 C -0.004 4.004 27 H 0.270 0.730 28 H 0.389 0.611 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.177 0.823 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.152 0.848 37 H 0.202 0.798 38 H 0.058 0.942 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.147 -12.539 8.558 15.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.083 0.917 9 C 0.202 3.798 10 O -0.383 6.383 11 C -0.121 4.121 12 N -0.200 5.200 13 C -0.040 4.040 14 C -0.212 4.212 15 C -0.082 4.082 16 N -0.184 5.184 17 H 0.283 0.717 18 N -0.114 5.114 19 C -0.032 4.032 20 C -0.074 4.074 21 C -0.082 4.082 22 C -0.207 4.207 23 C -0.060 4.060 24 N -0.190 5.190 25 C -0.030 4.030 26 C -0.133 4.133 27 H 0.081 0.919 28 H 0.244 0.756 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.194 0.806 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.170 0.830 37 H 0.218 0.782 38 H 0.076 0.924 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.005 -13.756 8.083 15.955 hybrid contribution 1.081 2.245 1.696 3.014 sum 1.086 -11.512 9.779 15.144 Atomic orbital electron populations 1.69351 1.06073 1.27734 1.50653 1.25044 0.94932 0.99557 0.93510 0.86449 0.79735 0.82552 0.78407 1.20325 1.21071 1.19787 1.21670 0.93679 0.90771 1.51394 0.91681 1.19744 0.85144 0.90704 0.84170 1.86054 1.46119 1.48562 1.57545 1.24180 0.95052 0.96617 0.96260 1.68287 1.26257 1.16720 1.08753 1.20948 0.93113 0.99410 0.90571 1.19982 1.05285 0.98144 0.97829 1.22347 0.93880 0.98755 0.93228 1.46081 1.32099 1.21364 1.18857 0.71725 1.77460 1.22560 1.05310 1.06064 1.20315 0.95268 0.95204 0.92419 1.18891 1.03818 0.91816 0.92912 1.21614 0.94554 0.92127 0.99908 1.21995 1.04144 1.00632 0.93940 1.22918 0.94363 0.93165 0.95560 1.67916 1.12091 1.01987 1.36991 1.24296 0.90304 1.01612 0.86813 1.24609 1.00420 0.86946 1.01332 0.91930 0.75649 0.90353 0.91587 0.90868 0.93576 0.80582 0.85036 0.85004 0.83032 0.78228 0.92405 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.65 11.08 55.43 0.61 -23.04 16 2 C 0.07 1.84 5.39 -17.82 -0.10 1.74 16 3 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.54 -13.87 8.62 -34.44 -0.30 -14.16 16 8 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 9 C 0.24 5.95 1.44 -90.84 -0.13 5.82 16 10 O -0.57 -15.26 13.49 -35.23 -0.48 -15.73 16 11 C 0.01 0.15 7.36 -2.77 -0.02 0.13 16 12 N -0.48 -9.33 3.81 -239.70 -0.91 -10.24 16 13 C 0.09 1.45 4.24 -4.98 -0.02 1.43 16 14 C -0.20 -3.15 5.11 -104.76 -0.54 -3.69 16 15 C 0.07 0.86 11.88 -17.26 -0.21 0.65 16 16 N -0.48 -5.90 7.35 30.42 0.22 -5.68 16 17 H 0.44 3.77 8.96 -182.61 -1.64 2.13 16 18 N -0.29 -4.48 12.71 33.43 0.42 -4.05 16 19 C 0.13 2.17 6.76 -82.78 -0.56 1.61 16 20 C -0.07 -1.11 5.81 -104.74 -0.61 -1.72 16 21 C -0.05 -0.73 9.91 -38.95 -0.39 -1.11 16 22 C -0.19 -2.15 10.10 -39.49 -0.40 -2.55 16 23 C 0.10 1.25 11.17 -17.50 -0.20 1.06 16 24 N -0.48 -7.99 10.35 -12.98 -0.13 -8.13 16 25 C 0.13 2.22 9.98 -17.20 -0.17 2.05 16 26 C 0.00 -0.09 6.86 -2.77 -0.02 -0.11 16 27 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 28 H 0.39 10.62 6.42 45.56 0.29 10.91 16 29 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 30 H 0.07 1.27 7.74 -51.93 -0.40 0.87 16 31 H 0.07 1.15 7.80 -51.93 -0.41 0.75 16 32 H 0.05 0.71 7.68 -51.93 -0.40 0.31 16 33 H 0.18 1.84 8.06 -52.48 -0.42 1.42 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 35 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.15 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.20 3.86 4.75 -52.49 -0.25 3.61 16 38 H 0.06 1.22 7.73 -51.93 -0.40 0.82 16 39 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -30.07 330.02 -9.24 -39.31 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -5.28 Total: 16.53 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.65 Total: -8.85 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: 0.22 Total: -51.15 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.48 Total: -15.73 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.07 -9.24 -39.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191916380.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.151 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds