Wall clock time and date at job start Tue Mar 31 2020 04:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47408 * 358.16867 * 3 2 1 5 5 C 1.36934 * 119.99998 * 84.65399 * 4 3 2 6 6 H 1.07998 * 119.99760 * 40.17297 * 5 4 3 7 7 C 1.38811 * 120.00246 * 220.16933 * 5 4 3 8 8 N 1.31621 * 119.99875 * 26.56361 * 7 5 4 9 9 Si 1.86800 * 120.00391 * 206.55778 * 7 5 4 10 10 H 1.48501 * 109.46829 * 90.00123 * 9 7 5 11 11 H 1.48502 * 109.47092 * 330.00318 * 9 7 5 12 12 H 1.48498 * 109.47437 * 210.00233 * 9 7 5 13 13 C 1.46506 * 120.00106 * 264.65739 * 4 3 2 14 14 C 1.53000 * 109.46988 * 269.99835 * 13 4 3 15 15 H 1.08997 * 109.49415 * 305.06192 * 14 13 4 16 16 C 1.53036 * 109.49591 * 65.16309 * 14 13 4 17 17 C 1.53047 * 109.53596 * 181.31518 * 16 14 13 18 18 C 1.53189 * 109.31220 * 298.63423 * 17 16 14 19 19 N 1.46923 * 108.77421 * 54.63490 * 18 17 16 20 20 S 1.65600 * 120.63132 * 126.41781 * 19 18 17 21 21 C 1.81403 * 104.44798 * 269.97524 * 20 19 18 22 22 O 1.42098 * 104.27843 * 26.04080 * 20 19 18 23 23 O 1.42098 * 104.28187 * 153.90448 * 20 19 18 24 24 C 1.46930 * 118.73946 * 306.38777 * 19 18 17 25 25 H 4.40638 * 5.51360 * 180.02562 * 4 1 2 26 26 H 1.09010 * 109.46840 * 238.16951 * 3 2 1 27 27 H 1.08999 * 109.47352 * 118.17231 * 3 2 1 28 28 H 0.97003 * 120.00164 * 6.03036 * 8 7 5 29 29 H 1.08997 * 109.46855 * 29.99925 * 13 4 3 30 30 H 1.09001 * 109.47293 * 149.99770 * 13 4 3 31 31 H 1.08995 * 109.46131 * 301.33347 * 16 14 13 32 32 H 1.09003 * 109.46406 * 61.29431 * 16 14 13 33 33 H 1.08999 * 109.49691 * 178.68151 * 17 16 14 34 34 H 1.08997 * 109.52237 * 58.60402 * 17 16 14 35 35 H 1.09003 * 109.58517 * 294.84966 * 18 17 16 36 36 H 1.09003 * 109.58602 * 174.42271 * 18 17 16 37 37 H 1.09001 * 109.47095 * 59.99374 * 21 20 19 38 38 H 1.08995 * 109.47280 * 179.97438 * 21 20 19 39 39 H 1.09001 * 109.46793 * 300.00270 * 21 20 19 40 40 H 1.09001 * 109.58754 * 293.82325 * 24 19 18 41 41 H 1.09003 * 109.70255 * 173.46574 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3796 0.0441 5 6 3.2594 -2.0992 -1.1142 6 1 3.6368 -1.6237 -2.0074 7 6 2.9006 -3.4399 -1.1403 8 7 1.9962 -3.8956 -0.2995 9 14 3.7009 -4.5973 -2.3688 10 1 4.9211 -5.1919 -1.7663 11 1 4.0710 -3.8416 -3.5924 12 1 2.7471 -5.6785 -2.7243 13 6 3.4909 -1.9900 1.3276 14 6 4.9686 -1.7276 1.6247 15 1 5.5756 -2.0813 0.7914 16 6 5.1917 -0.2261 1.8191 17 6 6.6753 0.0408 2.0840 18 6 7.0987 -0.6811 3.3671 19 7 6.7540 -2.1041 3.2449 20 16 7.9004 -3.2739 3.4888 21 6 8.6245 -3.5471 1.8482 22 8 8.8460 -2.6626 4.3556 23 8 7.1571 -4.4124 3.9017 24 6 5.3726 -2.4695 2.9027 25 1 -1.0498 -0.0004 -0.0002 26 1 3.0091 0.5429 0.8732 27 1 3.0091 0.4860 -0.9059 28 1 1.5174 -3.2807 0.2781 29 1 2.8786 -1.5563 2.1182 30 1 3.3150 -3.0646 1.2800 31 1 4.8819 0.3065 0.9201 32 1 4.6030 0.1217 2.6680 33 1 6.8372 1.1125 2.1991 34 1 7.2670 -0.3286 1.2465 35 1 6.5735 -0.2498 4.2193 36 1 8.1746 -0.5764 3.5072 37 1 9.0626 -2.6175 1.4850 38 1 9.3988 -4.3113 1.9155 39 1 7.8475 -3.8764 1.1584 40 1 4.7067 -2.1840 3.7170 41 1 5.3072 -3.5449 2.7370 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281316714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:31 Heat of formation + Delta-G solvation = -22.004235 kcal Electronic energy + Delta-G solvation = -23610.356514 eV Core-core repulsion = 20232.661235 eV Total energy + Delta-G solvation = -3377.695279 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -39.92502 -38.24935 -37.74150 -37.03126 -34.32593 -33.86420 -32.64344 -31.85947 -30.29208 -28.04539 -27.16524 -25.39394 -24.00513 -22.48467 -21.01946 -19.78481 -19.47725 -18.86252 -18.43169 -17.29671 -17.17531 -16.41524 -16.04330 -15.88023 -15.51955 -15.39933 -14.88831 -14.73030 -14.55358 -14.32152 -14.01382 -13.97589 -13.76024 -13.60285 -13.27456 -13.18720 -12.87861 -12.78342 -12.64152 -12.41921 -12.13987 -11.98221 -11.91917 -11.67110 -11.49865 -11.35403 -11.24590 -11.04685 -10.82402 -10.42324 -9.86080 -8.88688 -8.13434 -5.54238 -0.70277 1.58715 1.61920 1.64864 1.81913 1.99275 2.06575 2.68141 2.90661 3.13903 3.23680 3.64753 3.68075 3.82396 4.01271 4.06101 4.13321 4.15284 4.30433 4.39224 4.52884 4.61433 4.65975 4.73182 4.82044 4.88052 4.90851 4.93175 4.98596 5.14115 5.23836 5.29197 5.36825 5.42187 5.53756 5.65866 5.68692 6.00953 6.42774 6.88543 7.14224 7.76760 8.22692 8.97948 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.015189 B = 0.005516 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.017492 B = 5074.676786 C = 6202.636328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.210 4.210 3 C 0.233 3.767 4 N -0.589 5.589 5 C -0.354 4.354 6 H 0.043 0.957 7 C -0.059 4.059 8 N -0.924 5.924 9 Si 1.103 2.897 10 H -0.276 1.276 11 H -0.273 1.273 12 H -0.300 1.300 13 C 0.152 3.848 14 C -0.104 4.104 15 H 0.063 0.937 16 C -0.105 4.105 17 C -0.127 4.127 18 C 0.118 3.882 19 N -0.997 5.997 20 S 2.615 3.385 21 C -0.658 4.658 22 O -0.984 6.984 23 O -0.999 6.999 24 C 0.133 3.867 25 H 0.233 0.767 26 H 0.094 0.906 27 H 0.066 0.934 28 H 0.255 0.745 29 H 0.032 0.968 30 H 0.039 0.961 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.130 0.870 40 H 0.071 0.929 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.527 7.378 4.907 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.213 4.213 3 C 0.108 3.892 4 N -0.309 5.309 5 C -0.484 4.484 6 H 0.060 0.940 7 C -0.258 4.258 8 N -0.563 5.563 9 Si 0.928 3.072 10 H -0.203 1.203 11 H -0.199 1.199 12 H -0.227 1.227 13 C 0.026 3.974 14 C -0.126 4.126 15 H 0.081 0.919 16 C -0.142 4.142 17 C -0.166 4.166 18 C -0.006 4.006 19 N -0.835 5.835 20 S 2.713 3.287 21 C -0.811 4.811 22 O -0.975 6.975 23 O -0.990 6.990 24 C 0.007 3.993 25 H 0.250 0.750 26 H 0.112 0.888 27 H 0.084 0.916 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.169 0.831 38 H 0.165 0.835 39 H 0.149 0.851 40 H 0.089 0.911 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.878 5.395 5.283 14.929 hybrid contribution -1.028 1.376 -0.352 1.753 sum 11.851 6.772 4.930 14.512 Atomic orbital electron populations 1.25543 0.96887 1.02030 1.02689 1.25756 0.97421 0.99141 0.98981 1.18529 0.81464 0.88170 1.01057 1.44055 1.72657 1.10796 1.03431 1.19943 1.41312 0.95592 0.91527 0.93956 1.27123 0.95973 0.99880 1.02846 1.70858 1.20749 1.38906 1.25794 0.83026 0.75508 0.74231 0.74420 1.20262 1.19856 1.22676 1.20816 0.93066 0.97757 0.85781 1.21864 0.97478 0.97029 0.96211 0.91901 1.21504 0.96876 0.94535 1.01333 1.21918 0.95818 1.01369 0.97495 1.21606 1.01790 0.78594 0.98612 1.57564 1.20686 1.18853 1.86364 1.04495 0.73439 0.72637 0.78170 1.30423 1.14447 1.13661 1.22551 1.93543 1.63692 1.76422 1.63824 1.93559 1.71028 1.52391 1.81976 1.21291 0.81768 0.99277 0.96996 0.74997 0.88793 0.91577 0.93561 0.94910 0.94306 0.91876 0.92191 0.88819 0.91375 0.90616 0.87986 0.83071 0.83522 0.85099 0.91079 0.90773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.78 19.25 74.32 1.43 -8.34 16 2 C -0.21 -8.88 13.63 31.13 0.42 -8.46 16 3 C 0.23 9.18 5.06 84.57 0.43 9.61 16 4 N -0.59 -26.77 1.95 -712.55 -1.39 -28.16 16 5 C -0.35 -18.41 9.32 84.03 0.78 -17.63 16 6 H 0.04 2.26 7.96 -2.91 -0.02 2.24 16 7 C -0.06 -3.17 4.78 84.86 0.41 -2.76 16 8 N -0.92 -54.38 12.33 21.65 0.27 -54.12 16 9 Si 1.10 48.79 29.99 68.60 2.06 50.85 16 10 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 11 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 12 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 13 C 0.15 6.36 4.37 86.38 0.38 6.74 16 14 C -0.10 -3.36 2.54 -10.72 -0.03 -3.39 16 15 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 16 C -0.10 -2.70 4.22 30.62 0.13 -2.57 16 17 C -0.13 -2.41 6.08 30.67 0.19 -2.22 16 18 C 0.12 2.29 6.31 86.36 0.55 2.83 16 19 N -1.00 -24.11 3.22 -513.06 -1.65 -25.76 16 20 S 2.62 62.99 6.05 -56.49 -0.34 62.65 16 21 C -0.66 -10.81 10.99 113.37 1.25 -9.56 16 22 O -0.98 -27.05 16.72 -127.65 -2.13 -29.19 16 23 O -1.00 -32.76 16.73 -127.65 -2.14 -34.90 16 24 C 0.13 3.92 5.59 86.36 0.48 4.41 16 25 H 0.23 6.96 7.80 -4.43 -0.03 6.92 16 26 H 0.09 3.11 6.21 -2.38 -0.01 3.09 16 27 H 0.07 2.55 8.08 -2.39 -0.02 2.53 16 28 H 0.25 15.50 7.48 -92.71 -0.69 14.81 16 29 H 0.03 1.32 8.07 -2.39 -0.02 1.30 16 30 H 0.04 1.93 5.82 -2.39 -0.01 1.92 16 31 H 0.06 1.76 5.88 -2.39 -0.01 1.75 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.10 1.65 7.10 -2.39 -0.02 1.63 16 37 H 0.15 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.07 2.41 7.11 -2.39 -0.02 2.40 16 Total: -1.00 -72.31 345.24 2.16 -70.15 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: 1.08 Total: 19.84 kcal Atomic # 6 Polarization: -37.76 SS G_CDS: 6.41 Total: -31.35 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -2.78 Total: -108.04 kcal Atomic # 8 Polarization: -59.82 SS G_CDS: -4.27 Total: -64.09 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 2.06 Total: 50.85 kcal Atomic # 16 Polarization: 62.99 SS G_CDS: -0.34 Total: 62.65 kcal Total: -72.31 2.16 -70.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281316714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.146 kcal (2) G-P(sol) polarization free energy of solvation -72.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds