Wall clock time and date at job start Tue Mar 31 2020 05:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00429 * 2 1 4 4 H 1.48493 * 109.47257 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46655 * 300.00186 * 3 2 1 6 6 H 1.48499 * 109.47089 * 59.99623 * 3 2 1 7 7 C 1.38817 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00374 * 196.31800 * 7 2 1 9 9 N 1.36943 * 119.99915 * 16.31286 * 7 2 1 10 10 C 1.46958 * 120.59520 * 205.37593 * 9 7 2 11 11 C 1.53374 * 108.63288 * 235.24890 * 10 9 7 12 12 N 1.46962 * 108.63488 * 310.57328 * 11 10 9 13 13 C 1.34777 * 120.59262 * 235.20325 * 12 11 10 14 14 O 1.21598 * 120.00343 * 5.77969 * 13 12 11 15 15 C 1.47525 * 119.99788 * 185.50199 * 13 12 11 16 16 C 1.46501 * 120.16670 * 36.44231 * 15 13 12 17 17 C 1.35533 * 119.04904 * 180.02562 * 16 15 13 18 18 C 1.41227 * 119.42467 * 359.97438 * 17 16 15 19 19 C 1.37913 * 132.97087 * 180.02562 * 18 17 16 20 20 N 1.33452 * 107.65765 * 179.97438 * 19 18 17 21 21 C 1.30743 * 109.93961 * 359.97438 * 20 19 18 22 22 N 1.35927 * 109.20808 * 0.02562 * 21 20 19 23 23 C 1.36318 * 120.16682 * 216.17227 * 15 13 12 24 24 C 1.46968 * 118.81147 * 55.48234 * 12 11 10 25 25 C 1.46968 * 120.59103 * 25.39779 * 9 7 2 26 26 H 0.97004 * 119.99533 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.61287 * 115.50407 * 10 9 7 28 28 H 1.09000 * 109.60815 * 354.99249 * 10 9 7 29 29 H 1.09002 * 109.60736 * 190.83184 * 11 10 9 30 30 H 1.09000 * 109.75193 * 70.40690 * 11 10 9 31 31 H 1.08003 * 120.47609 * 359.97438 * 16 15 13 32 32 H 1.08003 * 120.28842 * 180.02562 * 17 16 15 33 33 H 1.07998 * 126.16885 * 359.96206 * 19 18 17 34 34 H 1.07999 * 125.39823 * 179.97438 * 21 20 19 35 35 H 1.07997 * 119.74685 * 359.97208 * 23 15 13 36 36 H 1.08998 * 109.61110 * 64.26268 * 24 12 11 37 37 H 1.08990 * 109.60946 * 184.77729 * 24 12 11 38 38 H 1.08994 * 109.60846 * 244.49447 * 25 9 7 39 39 H 1.09002 * 109.61136 * 5.00838 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0576 -1.2212 0.2622 9 7 1.3669 -2.3641 -0.3342 10 6 1.8535 -3.6582 0.1641 11 6 2.0981 -4.5840 -1.0340 12 7 0.9089 -4.5592 -1.8971 13 6 0.2763 -5.7029 -2.2262 14 8 0.6230 -6.7553 -1.7256 15 6 -0.8410 -5.6769 -3.1892 16 6 -0.8068 -4.7608 -4.3320 17 6 -1.8456 -4.7555 -5.2025 18 6 -2.9337 -5.6303 -4.9896 19 6 -4.1072 -5.8558 -5.6781 20 7 -4.7823 -6.8052 -5.0272 21 6 -4.1080 -7.1903 -3.9753 22 7 -2.9467 -6.4873 -3.9066 23 6 -1.9078 -6.5091 -3.0233 24 6 0.4256 -3.2656 -2.4000 25 6 0.1777 -2.3393 -1.1974 26 1 -0.4850 0.8401 0.0004 27 1 1.1061 -4.1013 0.8222 28 1 2.7854 -3.5128 0.7104 29 1 2.2729 -5.6004 -0.6811 30 1 2.9654 -4.2377 -1.5960 31 1 0.0338 -4.0986 -4.4782 32 1 -1.8410 -4.0886 -6.0520 33 1 -4.4229 -5.3543 -6.5809 34 1 -4.4241 -7.9465 -3.2720 35 1 -1.9322 -7.1884 -2.1841 36 1 1.1760 -2.8247 -3.0562 37 1 -0.5044 -3.4111 -2.9494 38 1 -0.6890 -2.6884 -0.6362 39 1 0.0029 -1.3229 -1.5502 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284494954.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:34 Heat of formation + Delta-G solvation = 83.516698 kcal Electronic energy + Delta-G solvation = -24126.612161 eV Core-core repulsion = 20650.341413 eV Total energy + Delta-G solvation = -3476.270748 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.73825 -41.29015 -38.61342 -37.89504 -35.74851 -34.48390 -33.35479 -32.22953 -31.51930 -29.25367 -28.74929 -26.12148 -25.27223 -24.26810 -23.79109 -22.84315 -22.20742 -20.43225 -19.39332 -18.61927 -18.12788 -17.44974 -17.06649 -16.87244 -16.65142 -16.26977 -15.85061 -15.62025 -15.46160 -15.24792 -15.18213 -14.88392 -14.43653 -14.07885 -13.89846 -13.37157 -13.24259 -12.88273 -12.75069 -12.64814 -12.45650 -12.19401 -12.03608 -11.99044 -11.71062 -11.58958 -11.36444 -11.08651 -10.61800 -10.32519 -9.90361 -8.70213 -8.58014 -7.87789 -5.35241 -0.39337 0.00600 1.33298 1.48840 1.52173 1.56725 1.61621 1.97813 2.07934 2.39549 2.52183 3.26405 3.28512 3.39575 3.58546 3.66106 3.71161 3.85000 3.91437 4.18394 4.22140 4.31539 4.41525 4.53012 4.56436 4.62872 4.74142 4.78382 4.79872 4.89419 5.05538 5.11576 5.22381 5.43944 5.48298 5.57336 5.60608 5.66032 6.05742 6.33385 6.35516 6.79553 6.96087 7.10404 7.78463 8.29619 9.16747 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.021056 B = 0.003903 C = 0.003500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1329.456710 B = 7171.543001 C = 7997.302600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.297 1.297 7 C -0.260 4.260 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.131 3.869 11 C 0.105 3.895 12 N -0.589 5.589 13 C 0.566 3.434 14 O -0.578 6.578 15 C -0.155 4.155 16 C -0.114 4.114 17 C -0.068 4.068 18 C -0.014 4.014 19 C -0.024 4.024 20 N -0.483 5.483 21 C 0.152 3.848 22 N -0.383 5.383 23 C 0.119 3.881 24 C 0.086 3.914 25 C 0.158 3.842 26 H 0.251 0.749 27 H 0.009 0.991 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.161 0.839 32 H 0.185 0.815 33 H 0.205 0.795 34 H 0.244 0.756 35 H 0.185 0.815 36 H 0.081 0.919 37 H 0.108 0.892 38 H -0.008 1.008 39 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.210 -10.019 -11.187 15.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.243 4.243 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.214 1.214 6 H -0.225 1.225 7 C -0.390 4.390 8 H 0.091 0.909 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.019 4.019 12 N -0.319 5.319 13 C 0.355 3.645 14 O -0.460 6.460 15 C -0.162 4.162 16 C -0.134 4.134 17 C -0.087 4.087 18 C -0.122 4.122 19 C -0.176 4.176 20 N -0.196 5.196 21 C -0.123 4.123 22 N -0.056 5.056 23 C -0.004 4.004 24 C -0.037 4.037 25 C 0.032 3.968 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.095 0.905 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.178 0.822 32 H 0.203 0.797 33 H 0.222 0.778 34 H 0.260 0.740 35 H 0.202 0.798 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.010 0.990 39 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.919 -10.814 -11.055 15.954 hybrid contribution 0.944 1.264 0.868 1.800 sum -2.976 -9.550 -10.187 14.277 Atomic orbital electron populations 1.70136 1.06608 1.25901 1.55597 1.25718 0.96020 1.01321 1.01271 0.85186 0.78598 0.79783 0.76714 1.19111 1.21357 1.22477 1.19626 0.92959 0.85473 1.40959 0.90896 1.44322 1.31890 1.01862 1.55201 1.21375 0.98182 0.86169 0.93840 1.22121 0.86604 1.00882 0.92247 1.47971 1.29031 1.06540 1.48376 1.18062 0.82139 0.83296 0.80987 1.90748 1.67774 1.31308 1.56216 1.20340 0.95772 1.01014 0.99046 1.22383 1.00763 0.97770 0.92516 1.20799 0.89976 0.97366 1.00576 1.20166 1.00744 0.98883 0.92376 1.23059 0.91213 1.00225 1.03078 1.69984 1.30372 1.13114 1.06141 1.25898 0.82781 1.02521 1.01103 1.43076 1.15438 1.28047 1.19013 1.21663 0.85841 0.98581 0.94271 1.23046 1.00686 0.82333 0.97629 1.21234 0.87068 0.99201 0.89322 0.93932 0.97342 0.90534 0.89108 0.90240 0.82166 0.79739 0.77778 0.73977 0.79791 0.90095 0.87411 0.99014 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -52.18 10.91 21.65 0.24 -51.94 16 2 C -0.05 -2.53 4.97 84.86 0.42 -2.11 16 3 Si 0.97 42.27 29.58 68.60 2.03 44.30 16 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 5 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.30 -13.26 7.11 99.48 0.71 -12.56 16 7 C -0.26 -13.38 9.62 84.03 0.81 -12.57 16 8 H 0.07 3.63 7.87 -2.91 -0.02 3.61 16 9 N -0.61 -28.69 2.98 -697.34 -2.08 -30.77 16 10 C 0.13 5.20 6.67 86.42 0.58 5.77 16 11 C 0.11 3.51 6.60 86.42 0.57 4.08 16 12 N -0.59 -19.42 2.94 -820.91 -2.41 -21.83 16 13 C 0.57 18.17 7.38 86.69 0.64 18.81 16 14 O -0.58 -21.35 16.20 -4.02 -0.07 -21.41 16 15 C -0.16 -4.07 5.34 -19.12 -0.10 -4.18 16 16 C -0.11 -2.44 7.56 23.80 0.18 -2.26 16 17 C -0.07 -1.25 10.09 22.38 0.23 -1.02 16 18 C -0.01 -0.31 6.78 38.81 0.26 -0.05 16 19 C -0.02 -0.50 12.00 84.37 1.01 0.51 16 20 N -0.48 -11.52 11.19 -197.51 -2.21 -13.73 16 21 C 0.15 3.12 12.76 179.91 2.30 5.42 16 22 N -0.38 -8.69 2.94 -349.86 -1.03 -9.72 16 23 C 0.12 2.82 10.50 83.54 0.88 3.70 16 24 C 0.09 2.81 5.04 86.56 0.44 3.25 16 25 C 0.16 7.01 5.56 86.56 0.48 7.49 16 26 H 0.25 13.59 8.31 -92.70 -0.77 12.82 16 27 H 0.01 0.36 8.14 -2.39 -0.02 0.35 16 28 H 0.08 2.86 7.92 -2.39 -0.02 2.84 16 29 H 0.09 2.94 6.99 -2.39 -0.02 2.92 16 30 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 31 H 0.16 3.02 6.29 -2.91 -0.02 3.00 16 32 H 0.19 2.04 8.06 -2.91 -0.02 2.01 16 33 H 0.21 3.00 8.06 -2.91 -0.02 2.98 16 34 H 0.24 3.00 8.06 -2.91 -0.02 2.98 16 35 H 0.19 3.82 7.95 -2.91 -0.02 3.79 16 36 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 37 H 0.11 3.02 4.32 -2.39 -0.01 3.01 16 38 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.09 4.27 5.71 -2.39 -0.01 4.26 16 Total: -1.00 -68.05 321.00 4.23 -63.81 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 1.08 Total: 14.45 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 8.69 Total: 26.84 kcal Atomic # 7 Polarization: -120.50 SS G_CDS: -7.50 Total: -128.00 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.07 Total: -21.41 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -68.05 4.23 -63.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284494954.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.332 kcal (2) G-P(sol) polarization free energy of solvation -68.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds