Wall clock time and date at job start Tue Mar 31 2020 04:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50700 * 109.47208 * 2 1 4 4 O 1.21283 * 119.99803 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99675 * 180.27843 * 3 2 1 6 6 C 1.46497 * 119.99525 * 179.72583 * 5 3 2 7 7 H 1.09000 * 109.50112 * 324.99848 * 6 5 3 8 8 C 1.53043 * 109.49795 * 204.92994 * 6 5 3 9 9 C 1.53038 * 109.54240 * 178.68380 * 8 6 5 10 10 C 1.53189 * 109.31115 * 61.36572 * 9 8 6 11 11 N 1.46927 * 108.77702 * 305.36740 * 10 9 8 12 12 C 1.34782 * 120.63067 * 233.60623 * 11 10 9 13 13 O 1.21280 * 119.99926 * 179.97438 * 12 11 10 14 14 C 1.50699 * 120.00049 * 0.02562 * 12 11 10 15 15 S 1.80997 * 109.47110 * 179.97438 * 14 12 11 16 16 C 1.76204 * 99.99935 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99848 * 359.97438 * 16 15 14 18 18 C 1.38798 * 120.00132 * 179.97438 * 16 15 14 19 19 N 1.31632 * 120.00266 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 119.99827 * 359.97438 * 18 16 15 21 21 H 1.48502 * 109.46788 * 90.00121 * 20 18 16 22 22 H 1.48501 * 109.47090 * 209.99971 * 20 18 16 23 23 H 1.48496 * 109.47256 * 330.00177 * 20 18 16 24 24 C 1.46936 * 118.76669 * 53.58789 * 11 10 9 25 25 H 1.09000 * 109.46887 * 300.00372 * 1 2 3 26 26 H 1.08998 * 109.46846 * 59.99549 * 1 2 3 27 27 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46730 * 239.99906 * 2 1 3 29 29 H 1.08998 * 109.46846 * 120.00451 * 2 1 3 30 30 H 0.97000 * 119.99894 * 359.71837 * 5 3 2 31 31 H 1.08995 * 109.45957 * 298.70872 * 8 6 5 32 32 H 1.09004 * 109.45597 * 58.66634 * 8 6 5 33 33 H 1.08999 * 109.49926 * 181.31783 * 9 8 6 34 34 H 1.09007 * 109.49860 * 301.41844 * 9 8 6 35 35 H 1.08997 * 109.58786 * 65.15537 * 10 9 8 36 36 H 1.08997 * 109.58847 * 185.57841 * 10 9 8 37 37 H 1.09004 * 109.46593 * 299.99489 * 14 12 11 38 38 H 1.08999 * 109.47259 * 59.99180 * 14 12 11 39 39 H 0.97002 * 120.00023 * 180.02562 * 19 18 16 40 40 H 1.08994 * 109.61863 * 186.64370 * 24 11 10 41 41 H 1.08997 * 109.56079 * 66.21238 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0057 6 6 3.8458 3.0482 -0.0117 7 1 3.1714 3.6700 -0.6005 8 6 5.2472 3.0918 -0.6252 9 6 5.7450 4.5385 -0.6621 10 6 5.8258 5.0831 0.7675 11 7 4.5175 4.9114 1.4136 12 6 3.8910 5.9591 1.9850 13 8 2.8111 5.8044 2.5148 14 6 4.5319 7.3229 1.9644 15 16 3.4532 8.5091 2.8042 16 6 4.4195 9.9730 2.6371 17 1 5.3723 9.9361 2.1299 18 6 3.9562 11.1735 3.1572 19 7 4.6783 12.2671 3.0328 20 14 2.3079 11.2375 4.0338 21 1 2.5067 10.9731 5.4816 22 1 1.7037 12.5821 3.8546 23 1 1.4030 10.2080 3.4623 24 6 3.9043 3.5761 1.4252 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.9878 0.9297 -0.0056 31 1 5.9264 2.4893 -0.0222 32 1 5.2121 2.6939 -1.6394 33 1 6.7334 4.5716 -1.1204 34 1 5.0528 5.1468 -1.2444 35 1 6.5839 4.5336 1.3255 36 1 6.0843 6.1416 0.7412 37 1 5.4934 7.2801 2.4760 38 1 4.6833 7.6376 0.9319 39 1 4.3547 13.1060 3.3967 40 1 2.8953 3.6403 1.8323 41 1 4.5055 2.9038 2.0372 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330542971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:21 Heat of formation + Delta-G solvation = -84.129501 kcal Electronic energy + Delta-G solvation = -22204.581720 eV Core-core repulsion = 18824.192487 eV Total energy + Delta-G solvation = -3380.389233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -40.51447 -39.46716 -37.37220 -34.79815 -33.12968 -32.43084 -32.35115 -30.72015 -28.80581 -25.66304 -25.28198 -24.91592 -22.89787 -21.23508 -20.49109 -19.12953 -17.72112 -17.38876 -16.87684 -16.23118 -16.11143 -15.53555 -15.22594 -14.92908 -14.72702 -14.34817 -13.86353 -13.80752 -13.54377 -13.33138 -13.22089 -12.89176 -12.76288 -12.53733 -12.05350 -12.03032 -11.84036 -11.47065 -11.35764 -11.30017 -11.19827 -10.98603 -10.87472 -10.57124 -10.05658 -9.83821 -9.56941 -9.39433 -8.98277 -8.54673 -8.45899 -6.89621 -6.27249 -3.98676 2.40860 2.61223 2.89019 2.98907 3.27772 3.35652 3.54036 3.61795 4.32195 4.35676 4.45280 4.53582 4.62873 4.66573 4.74280 4.77090 4.86196 5.04980 5.10694 5.12021 5.20619 5.20813 5.33601 5.48627 5.49544 5.59401 5.63707 5.65322 5.72812 5.77505 5.88796 5.94854 5.98218 6.00050 6.14819 6.56953 7.20655 7.46823 7.95810 8.00844 8.42672 8.46929 9.19261 10.81900 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.022119 B = 0.003306 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.588184 B = 8466.717115 C = 9481.290548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.143 4.143 3 C 0.507 3.493 4 O -0.528 6.528 5 N -0.729 5.729 6 C 0.130 3.870 7 H 0.093 0.907 8 C -0.124 4.124 9 C -0.133 4.133 10 C 0.104 3.896 11 N -0.617 5.617 12 C 0.533 3.467 13 O -0.513 6.513 14 C -0.120 4.120 15 S -0.143 6.143 16 C -0.520 4.520 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.881 5.881 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.106 3.894 25 H 0.063 0.937 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.400 0.600 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.271 0.729 40 H 0.097 0.903 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.094 -26.680 -9.118 28.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.183 4.183 3 C 0.293 3.707 4 O -0.403 6.403 5 N -0.381 5.381 6 C 0.024 3.976 7 H 0.111 0.889 8 C -0.162 4.162 9 C -0.171 4.171 10 C -0.019 4.019 11 N -0.354 5.354 12 C 0.320 3.680 13 O -0.387 6.387 14 C -0.271 4.271 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.518 5.518 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.019 4.019 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.234 0.766 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.088 0.912 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 0.909 -26.019 -8.289 27.322 hybrid contribution 1.204 0.094 -0.251 1.234 sum 2.113 -25.924 -8.540 27.376 Atomic orbital electron populations 1.21543 0.92918 1.01566 1.03648 1.21632 0.98849 0.93600 1.04193 1.20899 0.82118 0.92029 0.75664 1.90788 1.55078 1.46454 1.47957 1.46028 1.07286 1.08309 1.76493 1.21328 0.95990 0.83074 0.97167 0.88887 1.21791 0.95127 0.97940 1.01391 1.21900 1.02452 0.95540 0.97251 1.21795 0.84574 1.02972 0.92580 1.48004 1.20733 1.08312 1.58327 1.20339 0.84999 0.85365 0.77265 1.90711 1.20585 1.84215 1.43187 1.23304 1.03746 0.94573 1.05440 1.84854 1.29100 1.03139 1.74537 1.22306 1.08115 0.92677 1.43664 0.89395 1.24705 0.97503 0.94380 0.94699 1.69938 1.37825 0.99581 1.44414 0.86742 0.84618 0.79285 0.81281 1.19211 1.19937 1.15870 1.21841 1.00820 0.83297 0.95896 0.91768 0.91941 0.92092 0.89026 0.88920 0.76620 0.91140 0.90992 0.89895 0.90828 0.91223 0.88786 0.88523 0.88460 0.91957 0.88447 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.20 37.16 0.34 -0.73 16 2 C -0.14 -0.91 6.42 -27.88 -0.18 -1.08 16 3 C 0.51 5.26 7.80 -10.98 -0.09 5.17 16 4 O -0.53 -8.37 15.65 5.55 0.09 -8.28 16 5 N -0.73 -5.78 5.08 -53.69 -0.27 -6.06 16 6 C 0.13 1.32 2.60 -67.81 -0.18 1.14 16 7 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 8 C -0.12 -0.86 5.35 -26.69 -0.14 -1.00 16 9 C -0.13 -1.04 6.08 -26.61 -0.16 -1.20 16 10 C 0.10 1.04 6.34 -3.71 -0.02 1.02 16 11 N -0.62 -8.70 2.97 -172.76 -0.51 -9.21 16 12 C 0.53 10.17 7.72 -10.98 -0.08 10.08 16 13 O -0.51 -11.95 15.27 5.56 0.08 -11.86 16 14 C -0.12 -2.40 4.50 36.01 0.16 -2.23 16 15 S -0.14 -3.72 18.55 -107.50 -1.99 -5.71 16 16 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 17 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 18 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 19 N -0.88 -26.78 13.97 55.49 0.78 -26.00 16 20 Si 0.86 22.18 27.74 -169.99 -4.71 17.46 16 21 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 22 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.23 -6.12 6.74 56.52 0.38 -5.74 16 24 C 0.11 1.35 6.01 -3.70 -0.02 1.33 16 25 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 26 H 0.06 0.56 8.10 -51.93 -0.42 0.13 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.40 1.71 8.60 -40.82 -0.35 1.36 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 37 H 0.10 1.77 7.94 -51.91 -0.41 1.36 16 38 H 0.10 1.80 7.69 -51.92 -0.40 1.40 16 39 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 40 H 0.10 1.63 7.01 -51.93 -0.36 1.26 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 348.32 15.07 5.25 5.25 Total: -1.00 -37.39 348.32 -7.91 -45.30 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.45 Total: -1.30 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -0.16 Total: 0.41 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: -0.01 Total: -41.27 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.17 Total: -20.15 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.71 Total: 17.46 kcal Atomic # 16 Polarization: -3.72 SS G_CDS: -1.99 Total: -5.71 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.39 -7.91 -45.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330542971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.827 kcal (2) G-P(sol) polarization free energy of solvation -37.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds