Wall clock time and date at job start Tue Mar 31 2020 04:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21286 * 119.99188 * 2 1 4 4 N 1.34770 * 120.00223 * 179.97438 * 2 1 3 5 5 C 1.46507 * 119.99566 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46596 * 180.02562 * 5 4 2 7 7 N 1.46498 * 109.46828 * 179.97438 * 6 5 4 8 8 C 1.34781 * 120.00464 * 269.99901 * 7 6 5 9 9 O 1.21691 * 119.99249 * 4.97796 * 8 7 6 10 10 C 1.46369 * 120.00744 * 184.98167 * 8 7 6 11 11 H 1.08005 * 119.99461 * 336.20923 * 10 8 7 12 12 C 1.40045 * 120.00509 * 156.21388 * 10 8 7 13 13 N 1.30667 * 120.00350 * 170.31112 * 12 10 8 14 14 Si 1.86806 * 119.99641 * 350.30548 * 12 10 8 15 15 H 1.48497 * 109.46738 * 91.74540 * 14 12 10 16 16 H 1.48504 * 109.47055 * 211.74381 * 14 12 10 17 17 H 1.48493 * 109.47190 * 331.74795 * 14 12 10 18 18 C 1.46501 * 120.00223 * 89.99668 * 7 6 5 19 19 C 1.52583 * 109.22249 * 55.43588 * 18 7 6 20 20 C 1.53095 * 109.95532 * 169.00307 * 19 18 7 21 21 S 1.81746 * 108.84112 * 63.02558 * 20 19 18 22 22 C 1.81746 * 102.22166 * 306.73443 * 21 20 19 23 23 C 1.52576 * 109.23013 * 294.19943 * 18 7 6 24 24 H 1.09002 * 109.46855 * 239.99702 * 1 2 3 25 25 H 1.08992 * 109.47818 * 0.02562 * 1 2 3 26 26 H 1.09010 * 109.46748 * 120.00270 * 1 2 3 27 27 H 0.96999 * 120.00437 * 0.02562 * 4 2 1 28 28 H 1.08996 * 109.47169 * 60.00286 * 5 4 2 29 29 H 1.08995 * 109.46954 * 299.99771 * 5 4 2 30 30 H 1.08996 * 109.47364 * 60.00117 * 6 5 4 31 31 H 1.09000 * 109.47114 * 299.99896 * 6 5 4 32 32 H 0.96997 * 120.00356 * 179.97438 * 13 12 10 33 33 H 1.09005 * 109.18935 * 174.81561 * 18 7 6 34 34 H 1.08997 * 109.39278 * 289.15288 * 19 18 7 35 35 H 1.09000 * 109.39295 * 48.85499 * 19 18 7 36 36 H 1.09002 * 109.57874 * 303.21802 * 20 19 18 37 37 H 1.08998 * 109.57573 * 182.83337 * 20 19 18 38 38 H 1.09009 * 109.57338 * 293.45739 * 22 21 20 39 39 H 1.08994 * 109.57915 * 173.07366 * 22 21 20 40 40 H 1.09000 * 109.39042 * 311.14345 * 23 18 7 41 41 H 1.09006 * 109.38912 * 70.83968 * 23 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1669 0.0011 6 6 4.1560 -2.6095 0.0010 7 7 5.6210 -2.6094 0.0009 8 6 6.2950 -2.6092 -1.1663 9 8 5.6899 -2.5178 -2.2181 10 6 7.7545 -2.7192 -1.1688 11 1 8.3199 -2.4211 -0.2982 12 6 8.4178 -3.2108 -2.3000 13 7 9.7199 -3.1339 -2.3789 14 14 7.4412 -3.9768 -3.6961 15 1 7.1074 -2.9325 -4.6977 16 1 8.2514 -5.0409 -4.3415 17 1 6.1884 -4.5658 -3.1588 18 6 6.3536 -2.6093 1.2696 19 6 5.8971 -3.7958 2.1134 20 6 6.8320 -3.9748 3.3124 21 16 6.7239 -2.4982 4.3665 22 6 7.0531 -1.1571 3.1848 23 6 6.0934 -1.2953 2.0001 24 1 -0.3633 -0.5139 0.8900 25 1 -0.3634 1.0275 -0.0005 26 1 -0.3633 -0.5139 -0.8901 27 1 1.6960 -2.0072 0.0005 28 1 4.0089 -0.6529 0.8911 29 1 4.0096 -0.6533 -0.8889 30 1 3.7931 -3.1231 -0.8892 31 1 3.7924 -3.1235 0.8907 32 1 10.1793 -3.4748 -3.1622 33 1 7.4207 -2.7023 1.0672 34 1 4.8823 -3.6178 2.4691 35 1 5.9121 -4.6999 1.5047 36 1 7.8565 -4.0988 2.9615 37 1 6.5305 -4.8534 3.8827 38 1 8.0820 -1.2261 2.8313 39 1 6.8961 -0.1946 3.6716 40 1 6.2448 -0.4630 1.3127 41 1 5.0657 -1.2805 2.3632 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338721593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:49:54 Heat of formation + Delta-G solvation = -89.451353 kcal Electronic energy + Delta-G solvation = -23284.576593 eV Core-core repulsion = 19903.956587 eV Total energy + Delta-G solvation = -3380.620005 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.63229 -38.91101 -36.46567 -34.99884 -33.02980 -32.67044 -31.42523 -30.56725 -28.51485 -26.49804 -25.70182 -23.28714 -22.35214 -20.69110 -20.47819 -19.17947 -17.21017 -16.85914 -16.69589 -16.08853 -15.90530 -15.40106 -14.84801 -14.64366 -14.45799 -13.80097 -13.71913 -13.61867 -13.23420 -13.05828 -12.79260 -12.70145 -12.63851 -12.58266 -12.33770 -12.16769 -11.79793 -11.62061 -11.41035 -11.10494 -10.79613 -10.70199 -10.41393 -10.22465 -9.87732 -9.61937 -9.59643 -9.10182 -8.92632 -8.12004 -7.79726 -7.61038 -6.70930 -4.91413 1.88006 2.61654 2.70285 3.18719 3.35393 3.39070 3.58503 4.01873 4.06120 4.37992 4.78429 4.83132 5.00666 5.08771 5.11950 5.12791 5.21676 5.23225 5.27589 5.31778 5.52902 5.55979 5.60921 5.69227 5.77273 5.81643 5.88726 6.03744 6.06398 6.16871 6.32093 6.42793 6.46102 6.54369 6.94690 7.48206 7.56460 7.75326 8.18063 8.29146 8.58852 8.98803 9.88439 10.30554 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.009151 B = 0.006798 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3058.989552 B = 4117.999162 C = 6501.734137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.506 3.494 3 O -0.549 6.549 4 N -0.727 5.727 5 C 0.097 3.903 6 C 0.114 3.886 7 N -0.621 5.621 8 C 0.557 3.443 9 O -0.608 6.608 10 C -0.536 4.536 11 H 0.091 0.909 12 C 0.106 3.894 13 N -0.827 5.827 14 Si 0.951 3.049 15 H -0.276 1.276 16 H -0.314 1.314 17 H -0.263 1.263 18 C 0.140 3.860 19 C -0.129 4.129 20 C -0.072 4.072 21 S -0.286 6.286 22 C -0.072 4.072 23 C -0.134 4.134 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.398 0.602 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.282 0.718 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 -1.685 10.441 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.292 3.708 3 O -0.426 6.426 4 N -0.379 5.379 5 C -0.028 4.028 6 C -0.011 4.011 7 N -0.354 5.354 8 C 0.366 3.634 9 O -0.497 6.497 10 C -0.571 4.571 11 H 0.109 0.891 12 C -0.112 4.112 13 N -0.457 5.457 14 Si 0.782 3.218 15 H -0.202 1.202 16 H -0.244 1.244 17 H -0.188 1.188 18 C 0.035 3.965 19 C -0.169 4.169 20 C -0.221 4.221 21 S -0.060 6.060 22 C -0.221 4.221 23 C -0.174 4.174 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.232 0.768 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.107 0.893 39 H 0.120 0.880 40 H 0.099 0.901 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.366 -0.825 10.931 15.791 hybrid contribution -0.232 -0.741 -1.756 1.919 sum -11.598 -1.566 9.175 14.871 Atomic orbital electron populations 1.21909 0.91997 1.05299 1.04062 1.20771 0.90477 0.83614 0.75912 1.90731 1.70936 1.31440 1.49528 1.45998 1.07958 1.08527 1.75402 1.22093 0.78373 0.99331 1.02981 1.21205 0.83488 0.94311 1.02104 1.47643 1.03203 1.78571 1.05941 1.18418 0.88781 0.75379 0.80846 1.90334 1.70963 1.57617 1.30826 1.20685 0.88227 1.45657 1.02549 0.89150 1.25650 0.94828 0.92244 0.98459 1.69546 1.09175 1.37228 1.29704 0.85510 0.78566 0.77871 0.79889 1.20181 1.24388 1.18765 1.20990 0.99639 0.92210 0.83708 1.22085 0.98999 1.00167 0.95638 1.23401 1.03626 0.96913 0.98178 1.86655 1.94670 1.04040 1.20636 1.23420 1.03012 0.98444 0.97230 1.22272 0.99165 0.99642 0.96271 0.89570 0.89180 0.89512 0.76819 0.91328 0.90868 0.90247 0.91544 0.90751 0.86971 0.91148 0.90061 0.89293 0.88004 0.89326 0.87996 0.90118 0.91012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 10.32 36.01 0.37 -1.08 16 2 C 0.51 6.96 7.94 -10.99 -0.09 6.87 16 3 O -0.55 -10.35 17.09 5.55 0.09 -10.26 16 4 N -0.73 -9.26 5.56 -60.29 -0.33 -9.59 16 5 C 0.10 1.57 5.77 -4.04 -0.02 1.54 16 6 C 0.11 1.82 5.13 -4.04 -0.02 1.80 16 7 N -0.62 -11.93 2.38 -168.25 -0.40 -12.33 16 8 C 0.56 13.78 7.04 -12.99 -0.09 13.69 16 9 O -0.61 -16.67 12.58 5.20 0.07 -16.60 16 10 C -0.54 -14.18 9.13 -35.64 -0.33 -14.50 16 11 H 0.09 2.38 6.21 -52.48 -0.33 2.06 16 12 C 0.11 2.90 5.52 -17.37 -0.10 2.80 16 13 N -0.83 -22.66 13.92 55.55 0.77 -21.88 16 14 Si 0.95 24.05 26.09 -169.99 -4.44 19.61 16 15 H -0.28 -7.25 7.11 56.52 0.40 -6.85 16 16 H -0.31 -7.53 7.11 56.52 0.40 -7.12 16 17 H -0.26 -6.86 6.64 56.52 0.38 -6.48 16 18 C 0.14 2.27 2.16 -68.36 -0.15 2.12 16 19 C -0.13 -1.73 4.61 -26.90 -0.12 -1.85 16 20 C -0.07 -0.88 6.45 37.21 0.24 -0.64 16 21 S -0.29 -3.71 22.33 -107.50 -2.40 -6.11 16 22 C -0.07 -0.94 6.45 37.20 0.24 -0.70 16 23 C -0.13 -1.94 3.82 -26.90 -0.10 -2.04 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.09 0.77 8.12 -51.93 -0.42 0.34 16 26 H 0.09 0.58 8.14 -51.92 -0.42 0.16 16 27 H 0.40 3.68 8.47 -40.82 -0.35 3.33 16 28 H 0.07 1.12 5.63 -51.93 -0.29 0.83 16 29 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.08 1.39 7.49 -51.93 -0.39 1.00 16 31 H 0.07 0.86 6.43 -51.93 -0.33 0.52 16 32 H 0.28 7.15 8.29 -40.82 -0.34 6.81 16 33 H 0.11 2.10 5.24 -51.93 -0.27 1.83 16 34 H 0.07 0.87 6.96 -51.93 -0.36 0.51 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.31 8.08 -51.93 -0.42 0.89 16 41 H 0.07 1.00 6.82 -51.93 -0.35 0.65 16 LS Contribution 338.00 15.07 5.09 5.09 Total: -1.00 -33.11 338.00 -7.77 -40.88 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -6.06 Total: 3.18 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -0.17 Total: 8.02 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.04 Total: -43.81 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: 0.16 Total: -26.86 kcal Atomic # 14 Polarization: 24.05 SS G_CDS: -4.44 Total: 19.61 kcal Atomic # 16 Polarization: -3.71 SS G_CDS: -2.40 Total: -6.11 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.11 -7.77 -40.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338721593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.570 kcal (2) G-P(sol) polarization free energy of solvation -33.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds