Wall clock time and date at job start Tue Mar 31 2020 04:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99931 * 2 1 4 4 H 1.48498 * 109.46692 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47025 * 300.00081 * 3 2 1 6 6 H 1.48492 * 109.46854 * 60.00238 * 3 2 1 7 7 C 1.37876 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99844 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00340 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46957 * 180.02562 * 9 7 2 11 11 C 1.53006 * 109.46626 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46998 * 179.97438 * 11 10 9 13 13 C 1.34769 * 120.00241 * 180.02562 * 12 11 10 14 14 O 1.21353 * 120.00155 * 359.97438 * 13 12 11 15 15 C 1.49452 * 120.00169 * 180.02562 * 13 12 11 16 16 O 1.21346 * 120.00038 * 0.02562 * 15 13 12 17 17 N 1.34779 * 120.00093 * 179.97438 * 15 13 12 18 18 C 1.46500 * 120.00165 * 179.97438 * 17 15 13 19 19 C 1.52996 * 109.46993 * 180.02562 * 18 17 15 20 20 H 1.08996 * 110.70427 * 303.31362 * 19 18 17 21 21 C 1.54266 * 110.78682 * 179.97438 * 19 18 17 22 22 C 1.52326 * 112.58858 * 217.19535 * 21 19 18 23 23 C 1.54263 * 112.59012 * 0.02562 * 22 21 19 24 24 S 1.83957 * 110.78938 * 66.83894 * 19 18 17 25 25 H 0.97000 * 120.00540 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.46700 * 60.00119 * 9 7 2 27 27 H 1.09000 * 109.46974 * 300.00492 * 9 7 2 28 28 H 1.08993 * 109.47839 * 60.00178 * 10 9 7 29 29 H 1.09000 * 109.47160 * 299.99740 * 10 9 7 30 30 H 1.09000 * 109.47050 * 299.99699 * 11 10 9 31 31 H 1.09001 * 109.46801 * 59.99811 * 11 10 9 32 32 H 0.97010 * 119.99910 * 359.97438 * 12 11 10 33 33 H 0.97004 * 119.99472 * 0.02562 * 17 15 13 34 34 H 1.09000 * 109.47175 * 300.00155 * 18 17 15 35 35 H 1.08996 * 109.47197 * 59.99913 * 18 17 15 36 36 H 1.09002 * 108.86323 * 338.02124 * 21 19 18 37 37 H 1.09003 * 108.86378 * 96.52089 * 21 19 18 38 38 H 1.09003 * 108.86404 * 120.82233 * 22 21 19 39 39 H 1.09001 * 108.87047 * 239.32203 * 22 21 19 40 40 H 1.08997 * 110.78874 * 142.79880 * 23 22 21 41 41 H 1.08999 * 110.78228 * 266.25327 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 7 2.4322 -6.1007 -0.0018 13 6 1.9830 -7.3713 -0.0030 14 8 0.7899 -7.5931 -0.0030 15 6 2.9541 -8.5073 -0.0030 16 8 4.1472 -8.2855 -0.0015 17 7 2.5049 -9.7780 -0.0036 18 6 3.4569 -10.8915 -0.0043 19 6 2.6918 -12.2165 -0.0055 20 1 2.0140 -12.2709 0.8462 21 6 3.6671 -13.4117 -0.0069 22 6 3.1688 -14.5725 -0.8582 23 6 1.8063 -14.2800 -1.5198 24 16 1.7800 -12.4424 -1.5872 25 1 -0.4851 0.8400 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8896 28 1 2.8719 -3.6045 0.8894 29 1 2.8719 -3.6044 -0.8905 30 1 0.8533 -5.0451 0.8886 31 1 0.8538 -5.0445 -0.8914 32 1 3.3859 -5.9234 -0.0021 33 1 1.5512 -9.9551 -0.0044 34 1 4.0835 -10.8333 -0.8942 35 1 4.0836 -10.8342 0.8857 36 1 4.6310 -13.0797 -0.3927 37 1 3.7992 -13.7599 1.0176 38 1 3.9022 -14.7777 -1.6381 39 1 3.0700 -15.4556 -0.2271 40 1 1.7641 -14.7047 -2.5227 41 1 0.9890 -14.6561 -0.9045 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343150641.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:45 Heat of formation + Delta-G solvation = -94.004508 kcal Electronic energy + Delta-G solvation = -20964.414730 eV Core-core repulsion = 17583.597284 eV Total energy + Delta-G solvation = -3380.817445 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.61757 -38.61938 -37.17484 -35.76218 -34.91051 -33.31208 -31.23529 -31.14375 -27.56982 -26.80818 -24.88302 -23.48816 -22.26424 -21.18381 -20.74213 -19.93779 -18.43628 -17.42745 -16.99252 -16.34001 -16.23471 -16.08643 -15.39827 -15.23088 -14.84449 -14.68204 -14.44504 -14.35335 -13.74920 -13.61830 -13.30317 -12.78276 -12.33462 -12.30684 -12.18467 -11.94766 -11.87282 -11.77961 -11.65538 -11.13197 -10.92417 -10.75179 -10.57433 -10.37737 -9.89548 -9.79106 -9.52556 -9.37284 -9.11092 -8.96370 -8.37592 -8.18210 -6.02063 -4.04975 1.27622 1.42123 1.77500 2.30373 3.23329 3.30778 3.38303 3.42225 3.58690 3.92652 3.96376 4.21007 4.43969 4.46294 4.50792 4.57778 4.60634 4.84649 5.06309 5.11744 5.25589 5.32432 5.33971 5.36144 5.50308 5.60828 5.70738 5.89657 6.09564 6.28592 6.55405 6.69692 6.88570 6.96290 7.39438 7.62910 7.70568 7.74399 7.96487 8.06277 8.37737 9.01794 9.59399 11.09244 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.050062 B = 0.001960 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.176496 B =14284.152747 C =14626.350747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.114 3.886 12 N -0.691 5.691 13 C 0.500 3.500 14 O -0.524 6.524 15 C 0.511 3.489 16 O -0.520 6.520 17 N -0.704 5.704 18 C 0.137 3.863 19 C -0.053 4.053 20 H 0.106 0.894 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.072 4.072 24 S -0.278 6.278 25 H 0.261 0.739 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.411 0.589 33 H 0.416 0.584 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.106 0.894 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.711 -31.849 0.131 32.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.008 4.008 12 N -0.343 5.343 13 C 0.280 3.720 14 O -0.401 6.401 15 C 0.292 3.708 16 O -0.395 6.395 17 N -0.358 5.358 18 C 0.013 3.987 19 C -0.182 4.182 20 H 0.124 0.876 21 C -0.160 4.160 22 C -0.164 4.164 23 C -0.220 4.220 24 S -0.052 6.052 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.247 0.753 33 H 0.253 0.747 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.097 -30.919 -0.688 31.522 hybrid contribution 0.778 0.102 0.787 1.111 sum 6.875 -30.817 0.099 31.575 Atomic orbital electron populations 1.69973 1.06052 1.26596 1.50668 1.25033 0.94871 0.99344 0.95267 0.86514 0.80080 0.83695 0.77581 1.19729 1.21007 1.21007 1.21243 0.93097 0.90874 1.50798 0.92507 1.19041 0.93817 0.90803 0.97740 1.21928 0.99872 0.92946 1.01316 1.21852 0.91738 0.84692 1.02562 1.46061 1.12220 1.04950 1.71046 1.19953 0.88432 0.84484 0.79151 1.90771 1.15953 1.84663 1.48711 1.20341 0.88808 0.84283 0.77397 1.90761 1.16213 1.84777 1.47768 1.45732 1.11656 1.04718 1.73727 1.21346 0.91244 0.82143 1.03991 1.24217 0.99120 0.97315 0.97591 0.87594 1.22025 0.99511 0.92775 1.01672 1.22000 0.96014 0.98744 0.99647 1.24173 0.99983 0.93036 1.04792 1.88451 1.76600 1.08878 1.31271 0.92981 0.96161 0.96185 0.92423 0.92419 0.91072 0.91066 0.75315 0.74737 0.89631 0.89436 0.89878 0.90143 0.90345 0.90526 0.87602 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 11 C 0.11 1.98 5.67 -4.04 -0.02 1.96 16 12 N -0.69 -10.57 5.55 -60.73 -0.34 -10.90 16 13 C 0.50 7.68 7.89 -11.59 -0.09 7.59 16 14 O -0.52 -9.17 16.48 5.49 0.09 -9.08 16 15 C 0.51 6.84 7.89 -11.58 -0.09 6.75 16 16 O -0.52 -7.78 16.48 5.50 0.09 -7.69 16 17 N -0.70 -7.39 5.40 -60.73 -0.33 -7.71 16 18 C 0.14 1.08 5.00 -4.04 -0.02 1.06 16 19 C -0.05 -0.32 3.37 -26.07 -0.09 -0.41 16 20 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 21 C -0.12 -0.48 5.93 -26.41 -0.16 -0.63 16 22 C -0.12 -0.44 6.30 -26.41 -0.17 -0.61 16 23 C -0.07 -0.34 7.46 37.82 0.28 -0.06 16 24 S -0.28 -2.29 22.48 -107.50 -2.42 -4.71 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.41 5.72 7.95 -40.82 -0.32 5.40 16 33 H 0.42 4.28 7.84 -40.82 -0.32 3.96 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.32 7.78 -51.93 -0.40 -0.08 16 37 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 40 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 358.45 15.07 5.40 5.40 Total: -1.00 -32.84 358.45 -9.34 -42.17 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -6.51 Total: 1.87 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -1.04 Total: 0.13 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: 0.07 Total: -44.67 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: 0.18 Total: -16.77 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -2.29 SS G_CDS: -2.42 Total: -4.71 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.84 -9.34 -42.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343150641.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.831 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds