Wall clock time and date at job start Tue Mar 31 2020 03:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00040 * 2 1 4 4 H 1.48493 * 109.47195 * 269.99772 * 3 2 1 5 5 H 1.48501 * 109.47075 * 29.99919 * 3 2 1 6 6 H 1.48503 * 109.46823 * 149.99871 * 3 2 1 7 7 C 1.37882 * 119.99846 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99622 * 179.97438 * 7 2 1 9 9 C 1.50693 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46671 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.47016 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54085 * 68.37801 * 11 10 9 13 13 O 1.42098 * 110.54380 * 291.62975 * 11 10 9 14 14 N 1.65595 * 104.44868 * 180.02562 * 11 10 9 15 15 C 1.46498 * 120.00285 * 65.00212 * 14 11 10 16 16 C 1.53004 * 109.47348 * 164.99683 * 15 14 11 17 17 N 1.46502 * 109.46812 * 180.02562 * 16 15 14 18 18 C 1.39006 * 119.99544 * 180.02562 * 17 16 15 19 19 C 1.39335 * 120.09481 * 359.97438 * 18 17 16 20 20 N 1.31919 * 119.88999 * 179.97438 * 19 18 17 21 21 C 1.32281 * 120.08492 * 359.97438 * 20 19 18 22 22 C 1.38151 * 120.19273 * 0.28233 * 21 20 19 23 23 N 1.32256 * 120.11104 * 359.42622 * 22 21 20 24 24 H 0.97007 * 119.99734 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47220 * 60.00383 * 9 7 2 26 26 H 1.08997 * 109.47649 * 299.99625 * 9 7 2 27 27 H 1.09006 * 109.47149 * 60.00514 * 10 9 7 28 28 H 1.08999 * 109.47611 * 300.00338 * 10 9 7 29 29 H 0.97004 * 120.00027 * 244.99488 * 14 11 10 30 30 H 1.09002 * 109.46952 * 44.99648 * 15 14 11 31 31 H 1.08997 * 109.47466 * 285.00134 * 15 14 11 32 32 H 1.09000 * 109.46621 * 59.99973 * 16 15 14 33 33 H 1.09001 * 109.47044 * 299.99859 * 16 15 14 34 34 H 0.97002 * 120.00344 * 0.02562 * 17 16 15 35 35 H 1.08001 * 120.05648 * 359.96279 * 19 18 17 36 36 H 1.08002 * 119.90004 * 179.97438 * 21 20 19 37 37 H 1.08007 * 119.94682 * 179.70373 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6620 0.0005 11 16 1.3382 -5.2330 -0.0002 12 8 0.6647 -5.4193 -1.2376 13 8 0.6637 -5.4200 1.2364 14 7 2.5203 -6.3927 0.0006 15 6 3.4179 -6.5230 1.1510 16 6 4.1489 -7.8651 1.0782 17 7 5.0460 -7.9956 2.2290 18 6 5.8215 -9.1394 2.3795 19 6 5.7467 -10.1632 1.4373 20 7 6.4848 -11.2467 1.5839 21 6 7.2951 -11.3614 2.6231 22 6 7.3681 -10.3508 3.5622 23 7 6.6358 -9.2587 3.4198 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8719 -3.6043 0.8906 28 1 2.8720 -3.6043 -0.8894 29 1 2.6185 -6.9857 -0.7608 30 1 2.8371 -6.4752 2.0722 31 1 4.1456 -5.7117 1.1379 32 1 4.7297 -7.9129 0.1570 33 1 3.4212 -8.6764 1.0914 34 1 5.0989 -7.2839 2.8860 35 1 5.0854 -10.0699 0.5885 36 1 7.8977 -12.2500 2.7404 37 1 8.0275 -10.4508 4.4117 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348113584.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:25:56 Heat of formation + Delta-G solvation = -57.576505 kcal Electronic energy + Delta-G solvation = -21066.836255 eV Core-core repulsion = 17584.058103 eV Total energy + Delta-G solvation = -3482.778152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.86126 -38.33960 -38.00988 -37.00473 -35.88153 -35.87489 -34.75665 -33.10668 -31.40345 -28.66797 -27.57631 -25.78957 -24.38904 -23.62912 -23.21136 -20.36478 -19.15331 -19.01807 -18.40066 -18.10494 -17.43480 -17.17799 -17.08702 -16.52551 -16.51225 -15.94498 -15.69371 -15.52806 -15.20852 -14.98434 -14.47083 -13.78803 -13.73687 -13.56010 -13.26919 -13.18025 -13.07012 -12.92810 -12.76963 -12.58774 -12.45377 -12.32959 -12.21862 -12.12204 -11.72874 -11.24474 -11.08685 -10.64086 -10.39502 -10.00645 -8.85849 -8.25653 -6.39167 -0.68316 0.07059 0.36042 1.41417 1.42670 1.53649 1.64409 2.20573 2.38246 2.83138 2.91097 3.08158 3.28919 3.50105 3.57820 3.61362 3.71948 4.02034 4.07465 4.16768 4.32455 4.40132 4.42937 4.49732 4.65228 4.78878 4.85713 4.92789 5.30184 5.31248 5.39535 5.69558 5.73252 6.07179 6.12593 6.39659 6.60473 6.75144 7.03731 7.31066 8.86432 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.022776 B = 0.002635 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.078477 B =10625.459958 C =11506.727835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.005 4.005 3 Si 0.972 3.028 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.257 1.257 7 C -0.537 4.537 8 H 0.076 0.924 9 C 0.018 3.982 10 C -0.589 4.589 11 S 2.628 3.372 12 O -0.997 6.997 13 O -0.997 6.997 14 N -1.104 6.104 15 C 0.097 3.903 16 C 0.122 3.878 17 N -0.710 5.710 18 C 0.347 3.653 19 C -0.023 4.023 20 N -0.429 5.429 21 C -0.031 4.031 22 C 0.104 3.896 23 N -0.530 5.530 24 H 0.267 0.733 25 H 0.006 0.994 26 H 0.007 0.993 27 H 0.144 0.856 28 H 0.145 0.855 29 H 0.429 0.571 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.412 0.588 35 H 0.179 0.821 36 H 0.192 0.808 37 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.180 -20.234 4.248 26.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.796 3.204 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.721 4.721 11 S 2.724 3.276 12 O -0.987 6.987 13 O -0.987 6.987 14 N -0.866 5.866 15 C -0.029 4.029 16 C -0.004 4.004 17 N -0.344 5.344 18 C 0.108 3.892 19 C -0.191 4.191 20 N -0.143 5.143 21 C -0.192 4.192 22 C -0.056 4.056 23 N -0.254 5.254 24 H 0.075 0.925 25 H 0.025 0.975 26 H 0.026 0.974 27 H 0.162 0.838 28 H 0.163 0.837 29 H 0.266 0.734 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.249 0.751 35 H 0.196 0.804 36 H 0.209 0.791 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 14.939 -20.214 4.229 25.488 hybrid contribution 0.448 1.392 -0.039 1.463 sum 15.387 -18.822 4.190 24.669 Atomic orbital electron populations 1.70101 1.08041 1.28253 1.51005 1.26110 0.95840 1.03858 0.94533 0.85336 0.78676 0.77826 0.78557 1.19723 1.21023 1.18112 1.21533 0.94007 0.90827 1.51256 0.90541 1.18830 0.93713 0.93134 0.96428 1.30345 1.12771 1.16391 1.12576 1.04262 0.74450 0.76313 0.72599 1.93517 1.72871 1.85778 1.46545 1.93508 1.72614 1.85395 1.47162 1.55094 1.52187 1.51168 1.28186 1.21521 0.93611 0.98962 0.88855 1.21620 0.92553 0.97181 0.89032 1.44295 1.43622 1.17985 1.28454 1.19497 0.89900 0.88671 0.91151 1.23358 1.03370 0.90724 1.01634 1.68232 1.03229 1.21868 1.20980 1.23839 1.00545 1.02322 0.92444 1.24019 0.94535 0.87611 0.99440 1.67996 1.09216 1.26389 1.21823 0.92460 0.97545 0.97419 0.83751 0.83726 0.73380 0.89953 0.88686 0.88665 0.89920 0.75091 0.80433 0.79109 0.78378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.11 13.29 21.45 0.28 -55.83 16 2 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 3 Si 0.97 42.54 29.54 68.60 2.03 44.56 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 7 C -0.54 -28.88 9.11 25.60 0.23 -28.64 16 8 H 0.08 3.76 7.74 -2.91 -0.02 3.74 16 9 C 0.02 0.89 4.98 29.85 0.15 1.04 16 10 C -0.59 -20.04 6.01 71.98 0.43 -19.61 16 11 S 2.63 82.66 5.46 -56.49 -0.31 82.35 16 12 O -1.00 -38.30 18.08 -127.65 -2.31 -40.61 16 13 O -1.00 -38.24 17.49 -127.65 -2.23 -40.47 16 14 N -1.10 -20.42 5.88 -187.49 -1.10 -21.53 16 15 C 0.10 1.39 6.25 86.38 0.54 1.93 16 16 C 0.12 1.32 5.05 86.38 0.44 1.76 16 17 N -0.71 -9.81 5.73 -344.69 -1.97 -11.79 16 18 C 0.35 6.07 7.67 133.04 1.02 7.09 16 19 C -0.02 -0.38 10.49 84.94 0.89 0.51 16 20 N -0.43 -7.91 10.49 -194.67 -2.04 -9.95 16 21 C -0.03 -0.43 11.21 84.60 0.95 0.52 16 22 C 0.10 1.38 11.21 84.61 0.95 2.33 16 23 N -0.53 -9.79 10.53 -192.64 -2.03 -11.82 16 24 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 25 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.14 4.12 8.14 -2.39 -0.02 4.10 16 28 H 0.14 4.23 8.14 -2.39 -0.02 4.21 16 29 H 0.43 5.78 8.62 -96.74 -0.83 4.94 16 30 H 0.08 1.36 7.69 -2.39 -0.02 1.34 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.10 0.71 7.94 -2.39 -0.02 0.70 16 33 H 0.08 0.84 7.94 -2.39 -0.02 0.82 16 34 H 0.41 5.37 8.60 -92.71 -0.80 4.57 16 35 H 0.18 2.18 6.73 -2.91 -0.02 2.17 16 36 H 0.19 1.31 8.06 -2.91 -0.02 1.29 16 37 H 0.20 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -81.12 335.64 -4.15 -85.26 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -0.52 Total: 12.70 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 6.06 Total: -32.89 kcal Atomic # 7 Polarization: -104.04 SS G_CDS: -6.86 Total: -110.91 kcal Atomic # 8 Polarization: -76.54 SS G_CDS: -4.54 Total: -81.08 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.56 kcal Atomic # 16 Polarization: 82.66 SS G_CDS: -0.31 Total: 82.35 kcal Total: -81.12 -4.15 -85.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348113584.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.688 kcal (2) G-P(sol) polarization free energy of solvation -81.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds