Wall clock time and date at job start Tue Mar 31 2020 04:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86797 * 120.00207 * 2 1 4 4 H 1.48499 * 109.46840 * 275.41287 * 3 2 1 5 5 H 1.48501 * 109.47081 * 35.40790 * 3 2 1 6 6 H 1.48498 * 109.47373 * 155.41526 * 3 2 1 7 7 C 1.39942 * 119.99779 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00655 * 341.73174 * 7 2 1 9 9 C 1.41397 * 119.99950 * 161.72743 * 7 2 1 10 10 C 1.40713 * 120.24817 * 150.24425 * 9 7 2 11 11 C 1.37612 * 119.74726 * 179.97438 * 10 9 7 12 12 C 1.38636 * 120.25063 * 359.97438 * 11 10 9 13 13 C 1.50698 * 119.75160 * 179.97438 * 12 11 10 14 14 N 1.46904 * 109.46784 * 90.00036 * 13 12 11 15 15 C 1.48520 * 111.00182 * 285.39820 * 14 13 12 16 16 C 1.54281 * 104.71297 * 200.73160 * 15 14 13 17 17 H 1.09001 * 112.64016 * 260.86960 * 16 15 14 18 18 C 1.51214 * 109.21379 * 134.86771 * 16 15 14 19 19 O 1.21224 * 125.30970 * 68.74681 * 18 16 15 20 20 N 1.35315 * 108.55675 * 248.91077 * 18 16 15 21 21 C 1.33812 * 114.74381 * 359.53906 * 20 18 16 22 22 O 1.21223 * 125.31401 * 180.31791 * 21 20 18 23 23 C 1.51223 * 109.37824 * 0.28946 * 21 20 18 24 24 H 1.08996 * 113.20613 * 237.58747 * 23 21 20 25 25 C 1.48521 * 110.99777 * 170.00010 * 14 13 12 26 26 C 1.38635 * 120.49777 * 0.27452 * 12 11 10 27 27 C 1.37623 * 120.24872 * 359.44744 * 26 12 11 28 28 H 0.96997 * 120.00061 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.12216 * 359.94889 * 10 9 7 30 30 H 1.08009 * 119.87764 * 179.97438 * 11 10 9 31 31 H 1.08996 * 109.47152 * 330.00369 * 13 12 11 32 32 H 1.08994 * 109.47473 * 209.99871 * 13 12 11 33 33 H 1.09002 * 110.38752 * 319.53623 * 15 14 13 34 34 H 1.09001 * 110.38937 * 81.91593 * 15 14 13 35 35 H 0.96999 * 122.51937 * 179.83313 * 20 18 16 36 36 H 1.09003 * 110.38665 * 278.07970 * 25 14 13 37 37 H 1.08994 * 110.38893 * 40.46771 * 25 14 13 38 38 H 1.08001 * 119.87163 * 179.70801 * 26 12 11 39 39 H 1.08000 * 120.12338 * 180.27642 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3754 2.1123 -1.3938 5 1 1.5015 2.6169 0.8112 6 1 3.5923 1.4098 0.5825 7 6 2.0079 -1.2120 0.0005 8 1 1.5088 -2.1236 0.2941 9 6 3.3684 -1.2430 -0.3834 10 6 4.2372 -2.2057 0.1629 11 6 5.5593 -2.2269 -0.2185 12 6 6.0360 -1.3049 -1.1375 13 6 7.4860 -1.3380 -1.5467 14 7 7.6457 -2.2174 -2.7126 15 6 7.5478 -3.6462 -2.3190 16 6 8.2416 -4.4159 -3.4620 17 1 7.5329 -4.8353 -4.1761 18 6 9.1618 -5.4605 -2.8717 19 8 8.8036 -6.4530 -2.2749 20 7 10.4414 -5.0968 -3.1195 21 6 10.5765 -3.9560 -3.8057 22 8 11.6310 -3.4573 -4.1355 23 6 9.2083 -3.3862 -4.1063 24 1 9.0267 -3.2442 -5.1716 25 6 9.0076 -2.0914 -3.2916 26 6 5.1902 -0.3488 -1.6783 27 6 3.8631 -0.3125 -1.3158 28 1 -0.4850 0.8400 0.0004 29 1 3.8680 -2.9249 0.8790 30 1 6.2282 -2.9647 0.1998 31 1 8.0880 -1.7167 -0.7208 32 1 7.8141 -0.3309 -1.8037 33 1 8.0675 -3.8168 -1.3762 34 1 6.5033 -3.9470 -2.2378 35 1 11.1999 -5.6253 -2.8259 36 1 9.0637 -1.2198 -3.9439 37 1 9.7524 -2.0222 -2.4989 38 1 5.5734 0.3676 -2.3900 39 1 3.2050 0.4304 -1.7417 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399037215.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:32 Heat of formation + Delta-G solvation = -37.668055 kcal Electronic energy + Delta-G solvation = -23619.942687 eV Core-core repulsion = 20106.124222 eV Total energy + Delta-G solvation = -3513.818464 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -42.39206 -38.96709 -38.67753 -37.49192 -35.78290 -33.88852 -32.51177 -30.32378 -29.83719 -29.52394 -26.83473 -24.73757 -23.89015 -21.75689 -21.56804 -21.29256 -20.87069 -19.89643 -18.27513 -17.44949 -16.80972 -16.49589 -15.96716 -15.69535 -15.42848 -15.21136 -14.61498 -14.46961 -14.09850 -13.84003 -13.80661 -13.40938 -13.04873 -12.74118 -12.36210 -12.13804 -12.00286 -11.83241 -11.66507 -11.36849 -11.22955 -10.98922 -10.80490 -10.70500 -10.55298 -10.33731 -10.26261 -9.85634 -9.57052 -9.15013 -8.54360 -7.73182 -7.54937 -6.97499 -4.50568 1.09871 2.27696 2.33900 2.52868 2.67838 3.09225 3.20123 3.29839 3.59231 3.69838 3.88653 3.96436 4.12618 4.26200 4.56550 4.77011 4.91424 4.97721 5.32963 5.34762 5.41797 5.49941 5.55748 5.57765 5.70930 5.85948 5.96654 6.06138 6.12205 6.19008 6.53823 6.66861 6.82445 6.86929 6.88797 6.96769 7.15983 7.41146 7.45447 7.55624 7.77643 7.86926 8.10664 8.33763 8.63908 8.78168 10.04962 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.030703 B = 0.003309 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.750719 B = 8459.002597 C = 9039.162600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.084 3.916 3 Si 0.913 3.087 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.244 1.244 7 C -0.448 4.448 8 H 0.090 0.910 9 C 0.096 3.904 10 C -0.210 4.210 11 C -0.073 4.073 12 C -0.214 4.214 13 C 0.109 3.891 14 N -0.494 5.494 15 C 0.054 3.946 16 C -0.127 4.127 17 H 0.141 0.859 18 C 0.537 3.463 19 O -0.468 6.468 20 N -0.687 5.687 21 C 0.537 3.463 22 O -0.482 6.482 23 C -0.122 4.122 24 H 0.141 0.859 25 C 0.045 3.955 26 C -0.052 4.052 27 C -0.240 4.240 28 H 0.285 0.715 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.107 0.893 35 H 0.413 0.587 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.093 0.907 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.460 -4.516 -6.843 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.135 4.135 3 Si 0.740 3.260 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.168 1.168 7 C -0.476 4.476 8 H 0.108 0.892 9 C 0.093 3.907 10 C -0.229 4.229 11 C -0.092 4.092 12 C -0.215 4.215 13 C -0.018 4.018 14 N -0.218 5.218 15 C -0.075 4.075 16 C -0.149 4.149 17 H 0.159 0.841 18 C 0.324 3.676 19 O -0.338 6.338 20 N -0.353 5.353 21 C 0.324 3.676 22 O -0.353 6.353 23 C -0.144 4.144 24 H 0.159 0.841 25 C -0.084 4.084 26 C -0.071 4.071 27 C -0.259 4.259 28 H 0.096 0.904 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.051 0.949 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.125 0.875 35 H 0.253 0.747 36 H 0.118 0.882 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.986 -4.426 -7.081 18.036 hybrid contribution 1.188 0.169 0.729 1.404 sum 17.174 -4.257 -6.353 18.799 Atomic orbital electron populations 1.69700 1.08149 1.30289 1.35075 1.26175 0.94699 1.01818 0.90824 0.86285 0.81256 0.79673 0.78813 1.19621 1.21947 1.16762 1.19532 0.93327 0.96097 1.38646 0.89216 1.17740 0.92883 0.90774 0.89279 1.20974 0.93018 1.04193 1.04739 1.20462 0.95271 0.96731 0.96738 1.18747 0.93677 1.02791 1.06322 1.20934 0.95388 0.96102 0.89340 1.65685 1.23616 1.03418 1.29101 1.22973 1.02557 0.88352 0.93587 1.22983 0.97581 0.94098 1.00200 0.84085 1.21107 0.82981 0.85841 0.77643 1.90828 1.78659 1.26648 1.37638 1.45112 1.11283 1.25589 1.53282 1.20677 0.91912 0.79464 0.75508 1.90809 1.32119 1.61801 1.50581 1.22905 0.90491 0.96622 1.04394 0.84081 1.22994 0.91652 0.96009 0.97717 1.20399 0.93275 0.96482 0.96918 1.21021 0.95555 1.04976 1.04338 0.90444 0.88319 0.89381 0.94941 0.90843 0.93419 0.87477 0.74740 0.88207 0.93477 0.88885 0.88310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.32 13.93 55.55 0.77 -20.55 16 2 C 0.08 2.17 5.40 -17.34 -0.09 2.07 16 3 Si 0.91 20.47 24.52 -169.99 -4.17 16.31 16 4 H -0.27 -5.87 6.71 56.52 0.38 -5.49 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.24 -5.60 6.87 56.52 0.39 -5.21 16 7 C -0.45 -11.91 9.57 -37.74 -0.36 -12.27 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 9 C 0.10 2.37 5.10 -106.82 -0.55 1.83 16 10 C -0.21 -4.69 9.80 -38.88 -0.38 -5.07 16 11 C -0.07 -1.43 8.87 -39.66 -0.35 -1.78 16 12 C -0.21 -3.97 5.22 -104.33 -0.54 -4.51 16 13 C 0.11 1.57 4.97 -4.97 -0.02 1.54 16 14 N -0.49 -6.22 5.33 -231.60 -1.23 -7.45 16 15 C 0.05 0.63 5.24 -2.26 -0.01 0.62 16 16 C -0.13 -1.14 4.13 -89.67 -0.37 -1.51 16 17 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 18 C 0.54 5.35 7.65 -10.49 -0.08 5.27 16 19 O -0.47 -6.17 18.02 5.61 0.10 -6.07 16 20 N -0.69 -5.72 5.51 -11.15 -0.06 -5.79 16 21 C 0.54 4.99 7.54 -11.16 -0.08 4.91 16 22 O -0.48 -5.85 18.02 5.61 0.10 -5.75 16 23 C -0.12 -1.00 4.17 -89.66 -0.37 -1.38 16 24 H 0.14 0.88 8.14 -51.93 -0.42 0.45 16 25 C 0.04 0.44 6.00 -2.25 -0.01 0.42 16 26 C -0.05 -1.06 9.67 -39.66 -0.38 -1.44 16 27 C -0.24 -5.57 7.18 -38.87 -0.28 -5.85 16 28 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 29 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 30 H 0.09 1.51 8.06 -52.48 -0.42 1.08 16 31 H 0.03 0.45 7.71 -51.93 -0.40 0.05 16 32 H 0.07 0.99 8.02 -51.93 -0.42 0.57 16 33 H 0.05 0.58 7.34 -51.93 -0.38 0.20 16 34 H 0.11 1.44 7.87 -51.93 -0.41 1.03 16 35 H 0.41 2.76 8.96 -40.82 -0.37 2.39 16 36 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.47 7.58 -51.93 -0.39 0.08 16 38 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 39 H 0.10 2.32 4.74 -52.49 -0.25 2.07 16 LS Contribution 323.69 15.07 4.88 4.88 Total: -1.00 -29.43 323.69 -8.25 -37.68 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -4.74 Total: 3.90 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -3.90 Total: -17.16 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: -0.52 Total: -33.79 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.20 Total: -11.82 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.17 Total: 16.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -29.43 -8.25 -37.68 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399037215.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.010 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds