Wall clock time and date at job start Tue Mar 31 2020 03:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00183 * 2 1 4 4 H 1.48502 * 109.47062 * 239.99767 * 3 2 1 5 5 H 1.48501 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47565 * 119.99613 * 3 2 1 7 7 C 1.37885 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99607 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97606 * 124.99423 * 10 9 7 12 12 C 1.35242 * 107.86656 * 180.02562 * 11 10 9 13 13 C 1.40434 * 107.86025 * 0.02562 * 12 11 10 14 14 N 1.39985 * 125.97162 * 179.97438 * 13 12 11 15 15 S 1.65601 * 119.99715 * 179.97438 * 14 13 12 16 16 O 1.42095 * 106.40339 * 311.46257 * 15 14 13 17 17 O 1.42107 * 106.40104 * 178.53940 * 15 14 13 18 18 N 1.65604 * 107.21481 * 65.00682 * 15 14 13 19 19 C 1.47018 * 125.65126 * 89.99844 * 18 15 14 20 20 C 1.54325 * 107.40412 * 181.01678 * 19 18 15 21 21 C 1.55552 * 102.75696 * 22.23822 * 20 19 18 22 22 C 1.47430 * 125.64341 * 270.03737 * 18 15 14 23 23 N 1.31218 * 108.05059 * 0.23975 * 13 12 11 24 24 H 0.97002 * 120.00080 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47382 * 59.99619 * 9 7 2 26 26 H 1.09000 * 109.46939 * 299.99088 * 9 7 2 27 27 H 1.08001 * 126.06535 * 0.02562 * 11 10 9 28 28 H 1.08001 * 126.07207 * 179.97438 * 12 11 10 29 29 H 0.97003 * 120.00664 * 0.02562 * 14 13 12 30 30 H 1.09002 * 109.88241 * 300.51206 * 19 18 15 31 31 H 1.09000 * 109.88049 * 61.52335 * 19 18 15 32 32 H 1.08993 * 110.72531 * 140.63023 * 20 19 18 33 33 H 1.09000 * 110.72094 * 263.91129 * 20 19 18 34 34 H 1.08997 * 110.96565 * 206.40316 * 21 20 19 35 35 H 1.09000 * 111.02984 * 82.56372 * 21 20 19 36 36 H 1.08997 * 110.36526 * 274.67646 * 22 18 15 37 37 H 1.08992 * 110.36633 * 36.89111 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.2420 -4.6224 0.8953 12 6 3.2609 -5.4424 0.5512 13 6 3.8697 -4.9139 -0.5986 14 7 4.9650 -5.4634 -1.2755 15 16 5.5662 -4.7132 -2.6239 16 8 4.4503 -4.4308 -3.4571 17 8 6.6790 -5.4869 -3.0510 18 7 6.1720 -3.2494 -2.1414 19 6 7.5507 -2.9969 -1.6976 20 6 7.6491 -1.5027 -1.3245 21 6 6.1682 -1.1216 -1.0394 22 6 5.4178 -1.9839 -2.0849 23 7 3.2360 -3.8120 -0.9243 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 1.5776 -4.7523 1.7367 28 1 3.5548 -6.3433 1.0693 29 1 5.3714 -6.2839 -0.9552 30 1 7.7785 -3.6122 -0.8272 31 1 8.2473 -3.2241 -2.5046 32 1 8.2625 -1.3672 -0.4338 33 1 8.0442 -0.9222 -2.1582 34 1 5.9982 -0.0593 -1.2148 35 1 5.8810 -1.3993 -0.0253 36 1 5.4268 -1.4933 -3.0582 37 1 4.3929 -2.1672 -1.7627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408232789.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:57 Heat of formation + Delta-G solvation = 6.550412 kcal Electronic energy + Delta-G solvation = -23440.304828 eV Core-core repulsion = 19960.307428 eV Total energy + Delta-G solvation = -3479.997400 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 5.81 seconds Orbital eigenvalues (eV) -40.53665 -38.07815 -37.05288 -35.66410 -35.17498 -33.30954 -30.80266 -30.73594 -29.51467 -28.73132 -26.69118 -23.22036 -22.43303 -21.09770 -20.84888 -20.61268 -18.75217 -17.74445 -17.38172 -16.75681 -16.62454 -15.88549 -15.48182 -14.86639 -14.44049 -14.19347 -13.70991 -13.54511 -13.14618 -13.06197 -12.87290 -12.54116 -12.45717 -12.04137 -11.98191 -11.88494 -11.75435 -11.44580 -11.24486 -11.16516 -10.96062 -10.92348 -10.78563 -10.56908 -10.28733 -9.88409 -9.62431 -8.86583 -8.68152 -8.36170 -7.67872 -6.29295 -4.34687 0.66802 2.62700 2.77623 3.20476 3.25518 3.26101 3.28468 3.47043 3.82082 4.26081 4.39690 4.72852 4.95052 4.99942 5.03853 5.10775 5.37988 5.47896 5.56845 5.73922 5.86428 5.96769 6.05299 6.08932 6.09523 6.19610 6.25582 6.45438 6.54614 6.59626 6.69854 6.96667 7.10092 7.34512 7.62767 7.80324 7.91072 8.42008 8.72238 9.30867 10.79719 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.006627 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.458959 B = 4224.066988 C = 5455.545342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.071 0.929 9 C 0.256 3.744 10 N -0.313 5.313 11 C 0.070 3.930 12 C -0.307 4.307 13 C 0.280 3.720 14 N -1.027 6.027 15 S 2.802 3.198 16 O -0.946 6.946 17 O -0.982 6.982 18 N -1.009 6.009 19 C 0.122 3.878 20 C -0.128 4.128 21 C -0.128 4.128 22 C 0.110 3.890 23 N -0.304 5.304 24 H 0.268 0.732 25 H 0.048 0.952 26 H 0.058 0.942 27 H 0.171 0.829 28 H 0.139 0.861 29 H 0.427 0.573 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.063 0.937 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.540 -6.378 1.545 13.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.139 3.861 10 N -0.094 5.094 11 C -0.082 4.082 12 C -0.341 4.341 13 C 0.024 3.976 14 N -0.780 5.780 15 S 2.810 3.190 16 O -0.929 6.929 17 O -0.966 6.966 18 N -0.850 5.850 19 C -0.004 4.004 20 C -0.167 4.167 21 C -0.167 4.167 22 C -0.015 4.015 23 N -0.136 5.136 24 H 0.078 0.922 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.188 0.812 28 H 0.157 0.843 29 H 0.262 0.738 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.100 -5.449 -0.315 12.369 hybrid contribution 0.591 -0.091 1.246 1.382 sum 11.691 -5.540 0.930 12.970 Atomic orbital electron populations 1.69899 1.06072 1.27800 1.49354 1.24921 0.94939 0.99462 0.94545 0.86458 0.79562 0.81998 0.78982 1.19631 1.21096 1.20005 1.21176 0.93953 0.89193 1.52536 0.91096 1.19822 0.85591 0.81185 0.99498 1.49115 1.22850 1.19677 1.17722 1.22430 0.99498 0.89953 0.96325 1.20842 1.04240 1.06590 1.02427 1.18666 0.90608 0.94396 0.93912 1.53135 1.39350 1.37415 1.48143 1.01513 0.72869 0.71674 0.72970 1.93669 1.52098 1.83935 1.63215 1.93608 1.53370 1.69821 1.79819 1.58809 1.19215 1.24077 1.82917 1.21661 0.82414 0.97392 0.98896 1.22702 0.97773 0.94597 1.01655 1.22813 0.93742 1.00084 1.00056 1.22350 0.98154 0.82164 0.98811 1.77267 1.03973 1.16247 1.16072 0.92215 0.93425 0.92426 0.81218 0.84336 0.73803 0.92129 0.91466 0.90477 0.90823 0.90214 0.90510 0.91908 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.53 -13.64 9.23 -34.44 -0.32 -13.96 16 8 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.26 6.09 6.26 -5.19 -0.03 6.06 16 10 N -0.31 -6.66 3.67 -62.56 -0.23 -6.89 16 11 C 0.07 1.20 11.44 -17.24 -0.20 1.00 16 12 C -0.31 -4.98 10.83 -39.82 -0.43 -5.41 16 13 C 0.28 5.13 7.77 -154.55 -1.20 3.93 16 14 N -1.03 -15.73 5.97 31.39 0.19 -15.54 16 15 S 2.80 47.72 6.13 -107.50 -0.66 47.07 16 16 O -0.95 -19.91 16.94 -57.17 -0.97 -20.88 16 17 O -0.98 -17.07 17.72 -57.17 -1.01 -18.08 16 18 N -1.01 -15.89 3.76 -111.42 -0.42 -16.31 16 19 C 0.12 1.53 6.98 -3.07 -0.02 1.50 16 20 C -0.13 -1.44 6.98 -24.68 -0.17 -1.62 16 21 C -0.13 -1.85 7.10 -24.37 -0.17 -2.02 16 22 C 0.11 1.87 6.96 -2.53 -0.02 1.85 16 23 N -0.30 -6.55 9.12 31.41 0.29 -6.27 16 24 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 25 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 27 H 0.17 2.28 8.06 -52.49 -0.42 1.86 16 28 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 29 H 0.43 4.92 8.96 -34.47 -0.31 4.62 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.12 2.38 5.66 -51.93 -0.29 2.09 16 LS Contribution 326.50 15.07 4.92 4.92 Total: -1.00 -32.04 326.50 -9.64 -41.67 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -4.79 Total: 5.82 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -2.66 Total: -7.08 kcal Atomic # 7 Polarization: -69.12 SS G_CDS: 0.56 Total: -68.56 kcal Atomic # 8 Polarization: -36.97 SS G_CDS: -1.98 Total: -38.96 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Atomic # 16 Polarization: 47.72 SS G_CDS: -0.66 Total: 47.07 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.04 -9.64 -41.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408232789.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.223 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.81 seconds