Wall clock time and date at job start Tue Mar 31 2020 03:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00183 * 2 1 4 4 H 1.48502 * 109.47062 * 239.99767 * 3 2 1 5 5 H 1.48501 * 109.47081 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47565 * 119.99613 * 3 2 1 7 7 C 1.37885 * 119.99994 * 179.97438 * 2 1 3 8 8 H 1.07988 * 120.00049 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99607 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46794 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97606 * 124.99423 * 10 9 7 12 12 C 1.35242 * 107.86656 * 180.02562 * 11 10 9 13 13 C 1.40434 * 107.86025 * 0.02562 * 12 11 10 14 14 N 1.39985 * 125.97162 * 179.97438 * 13 12 11 15 15 S 1.65601 * 119.99715 * 179.97438 * 14 13 12 16 16 O 1.42095 * 106.40339 * 311.46257 * 15 14 13 17 17 O 1.42107 * 106.40104 * 178.53940 * 15 14 13 18 18 N 1.65604 * 107.21481 * 65.00682 * 15 14 13 19 19 C 1.47018 * 125.65126 * 89.99844 * 18 15 14 20 20 C 1.54325 * 107.40412 * 181.01678 * 19 18 15 21 21 C 1.55552 * 102.75696 * 22.23822 * 20 19 18 22 22 C 1.47430 * 125.64341 * 270.03737 * 18 15 14 23 23 N 1.31218 * 108.05059 * 0.23975 * 13 12 11 24 24 H 0.97002 * 120.00080 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47382 * 59.99619 * 9 7 2 26 26 H 1.09000 * 109.46939 * 299.99088 * 9 7 2 27 27 H 1.08001 * 126.06535 * 0.02562 * 11 10 9 28 28 H 1.08001 * 126.07207 * 179.97438 * 12 11 10 29 29 H 0.97003 * 120.00664 * 0.02562 * 14 13 12 30 30 H 1.09002 * 109.88241 * 300.51206 * 19 18 15 31 31 H 1.09000 * 109.88049 * 61.52335 * 19 18 15 32 32 H 1.08993 * 110.72531 * 140.63023 * 20 19 18 33 33 H 1.09000 * 110.72094 * 263.91129 * 20 19 18 34 34 H 1.08997 * 110.96565 * 206.40316 * 21 20 19 35 35 H 1.09000 * 111.02984 * 82.56372 * 21 20 19 36 36 H 1.08997 * 110.36526 * 274.67646 * 22 18 15 37 37 H 1.08992 * 110.36633 * 36.89111 * 22 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 2.2420 -4.6224 0.8953 12 6 3.2609 -5.4424 0.5512 13 6 3.8697 -4.9139 -0.5986 14 7 4.9650 -5.4634 -1.2755 15 16 5.5662 -4.7132 -2.6239 16 8 4.4503 -4.4308 -3.4571 17 8 6.6790 -5.4869 -3.0510 18 7 6.1720 -3.2494 -2.1414 19 6 7.5507 -2.9969 -1.6976 20 6 7.6491 -1.5027 -1.3245 21 6 6.1682 -1.1216 -1.0394 22 6 5.4178 -1.9839 -2.0849 23 7 3.2360 -3.8120 -0.9243 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5571 -0.8896 26 1 0.6241 -2.5567 0.8904 27 1 1.5776 -4.7523 1.7367 28 1 3.5548 -6.3433 1.0693 29 1 5.3714 -6.2839 -0.9552 30 1 7.7785 -3.6122 -0.8272 31 1 8.2473 -3.2241 -2.5046 32 1 8.2625 -1.3672 -0.4338 33 1 8.0442 -0.9222 -2.1582 34 1 5.9982 -0.0593 -1.2148 35 1 5.8810 -1.3993 -0.0253 36 1 5.4268 -1.4933 -3.0582 37 1 4.3929 -2.1672 -1.7627 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408232789.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:26:52 Heat of formation + Delta-G solvation = -16.412618 kcal Electronic energy + Delta-G solvation = -23441.300580 eV Core-core repulsion = 19960.307428 eV Total energy + Delta-G solvation = -3480.993152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 4.46 seconds Orbital eigenvalues (eV) -41.98527 -39.20953 -38.48610 -37.13115 -36.63020 -35.16446 -32.48340 -31.87794 -30.93821 -29.85741 -28.45979 -25.00606 -23.62478 -22.36012 -22.15273 -21.99247 -20.08788 -19.06712 -18.77056 -18.55603 -18.12492 -17.09704 -16.99571 -16.41387 -16.00471 -15.75859 -14.94258 -14.69188 -14.55006 -14.35014 -14.31329 -14.19609 -13.75615 -13.59392 -13.43360 -13.32131 -13.22232 -12.94977 -12.76405 -12.66211 -12.42313 -12.24052 -12.16455 -12.05012 -11.61759 -11.53410 -11.21531 -10.65737 -10.08675 -9.81271 -9.17122 -8.27065 -6.39313 -0.67566 1.18992 1.39834 1.42814 1.45115 1.52331 1.89683 2.07621 2.37653 2.47451 3.06329 3.11148 3.60975 3.70704 3.85280 4.09518 4.10474 4.37248 4.54028 4.58277 4.64888 4.83107 4.91444 4.93453 4.96503 4.98330 5.05547 5.07326 5.09541 5.24260 5.37281 5.42916 5.64881 5.71148 5.92026 6.02372 6.32548 6.72109 6.98402 7.30086 8.80995 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.014902 B = 0.006627 C = 0.005131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.458959 B = 4224.066988 C = 5455.545342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.018 3.982 3 Si 0.960 3.040 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.065 0.935 9 C 0.270 3.730 10 N -0.341 5.341 11 C 0.068 3.932 12 C -0.294 4.294 13 C 0.277 3.723 14 N -1.013 6.013 15 S 2.816 3.184 16 O -0.992 6.992 17 O -0.985 6.985 18 N -1.009 6.009 19 C 0.110 3.890 20 C -0.115 4.115 21 C -0.127 4.127 22 C 0.104 3.896 23 N -0.348 5.348 24 H 0.269 0.731 25 H 0.014 0.986 26 H 0.061 0.939 27 H 0.206 0.794 28 H 0.181 0.819 29 H 0.444 0.556 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.822 -6.812 2.883 15.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.182 4.182 3 Si 0.785 3.215 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.083 0.917 9 C 0.152 3.848 10 N -0.123 5.123 11 C -0.081 4.081 12 C -0.327 4.327 13 C 0.020 3.980 14 N -0.769 5.769 15 S 2.824 3.176 16 O -0.976 6.976 17 O -0.969 6.969 18 N -0.852 5.852 19 C -0.015 4.015 20 C -0.153 4.153 21 C -0.166 4.166 22 C -0.021 4.021 23 N -0.179 5.179 24 H 0.078 0.922 25 H 0.031 0.969 26 H 0.079 0.921 27 H 0.223 0.777 28 H 0.198 0.802 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 13.421 -5.938 1.037 14.712 hybrid contribution -0.075 -0.075 0.830 0.836 sum 13.346 -6.014 1.867 14.757 Atomic orbital electron populations 1.69999 1.07386 1.28559 1.50449 1.25706 0.95681 1.02643 0.94172 0.85552 0.78518 0.78065 0.79403 1.19225 1.20826 1.18784 1.21410 0.93845 0.90394 1.52014 0.91677 1.19352 0.85735 0.81855 0.97895 1.48829 1.23437 1.20537 1.19491 1.23171 1.00094 0.88519 0.96311 1.21305 1.02873 1.07263 1.01234 1.19009 0.90724 0.93845 0.94457 1.52895 1.38612 1.38058 1.47385 1.00855 0.72058 0.71765 0.72885 1.93613 1.54044 1.84695 1.65202 1.93595 1.53091 1.70084 1.80156 1.58664 1.20531 1.23025 1.82975 1.22015 0.80628 0.98744 1.00089 1.22709 0.95639 0.93588 1.03407 1.22769 0.95819 0.99710 0.98285 1.22281 0.97027 0.83216 0.99567 1.77241 1.05021 1.18272 1.17327 0.92162 0.96851 0.92092 0.77716 0.80170 0.71629 0.90464 0.90143 0.87892 0.89282 0.89791 0.91872 0.91965 0.90182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.38 13.29 21.45 0.28 -51.09 16 2 C 0.02 0.95 5.46 84.66 0.46 1.41 16 3 Si 0.96 41.43 29.54 68.60 2.03 43.45 16 4 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 7 C -0.54 -28.43 9.23 25.60 0.24 -28.19 16 8 H 0.07 3.44 7.81 -2.92 -0.02 3.42 16 9 C 0.27 13.31 6.26 85.63 0.54 13.85 16 10 N -0.34 -14.69 3.67 -351.85 -1.29 -15.98 16 11 C 0.07 2.24 11.44 83.52 0.96 3.19 16 12 C -0.29 -8.74 10.83 22.11 0.24 -8.50 16 13 C 0.28 9.84 7.77 133.39 1.04 10.88 16 14 N -1.01 -29.60 5.97 -54.61 -0.33 -29.93 16 15 S 2.82 94.58 6.13 -56.49 -0.35 94.23 16 16 O -0.99 -42.83 16.94 -128.00 -2.17 -45.00 16 17 O -0.99 -32.88 17.72 -128.00 -2.27 -35.15 16 18 N -1.01 -30.97 3.76 -506.43 -1.90 -32.87 16 19 C 0.11 2.46 6.98 86.73 0.61 3.07 16 20 C -0.11 -2.24 6.98 31.92 0.22 -2.02 16 21 C -0.13 -3.52 7.10 32.13 0.23 -3.29 16 22 C 0.10 3.58 6.96 86.85 0.60 4.19 16 23 N -0.35 -15.19 9.12 -54.55 -0.50 -15.69 16 24 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.01 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.06 2.90 8.07 -2.39 -0.02 2.88 16 27 H 0.21 4.96 8.06 -2.91 -0.02 4.94 16 28 H 0.18 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.44 9.18 8.96 -96.74 -0.87 8.32 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.08 3.41 5.66 -2.39 -0.01 3.40 16 Total: -1.00 -71.23 326.50 -1.14 -72.36 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.23 Total: 21.07 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 5.13 Total: -5.41 kcal Atomic # 7 Polarization: -141.83 SS G_CDS: -3.73 Total: -145.56 kcal Atomic # 8 Polarization: -75.71 SS G_CDS: -4.44 Total: -80.14 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 94.58 SS G_CDS: -0.35 Total: 94.23 kcal Total: -71.23 -1.14 -72.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408232789.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.950 kcal (2) G-P(sol) polarization free energy of solvation -71.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.46 seconds