Wall clock time and date at job start Tue Mar 31 2020 03:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50702 * 119.99932 * 2 1 4 4 N 1.46500 * 109.47089 * 124.72256 * 3 2 1 5 5 C 1.35305 * 125.86996 * 124.71440 * 4 3 2 6 6 C 1.35347 * 106.17852 * 179.90155 * 5 4 3 7 7 C 1.50703 * 126.75404 * 180.12347 * 6 5 4 8 8 N 1.46496 * 109.46948 * 95.24878 * 7 6 5 9 9 S 1.65607 * 120.00042 * 165.00166 * 8 7 6 10 10 O 1.42099 * 104.27859 * 181.07213 * 9 8 7 11 11 O 1.42095 * 104.27223 * 308.92742 * 9 8 7 12 12 C 1.81394 * 104.44903 * 64.99876 * 9 8 7 13 13 C 1.52995 * 109.47212 * 180.02562 * 12 9 8 14 14 C 1.50698 * 109.47483 * 179.97438 * 13 12 9 15 15 H 1.08005 * 119.99999 * 0.02562 * 14 13 12 16 16 C 1.37875 * 120.00433 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99979 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00204 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47482 * 90.00304 * 18 16 14 20 20 H 1.48509 * 109.47358 * 210.00247 * 18 16 14 21 21 H 1.48504 * 109.47505 * 330.00106 * 18 16 14 22 22 N 1.33776 * 106.49548 * 0.35304 * 6 5 4 23 23 N 1.28639 * 108.88329 * 359.77293 * 22 6 5 24 24 H 1.08002 * 119.99713 * 0.27722 * 1 2 3 25 25 H 1.07999 * 120.00046 * 180.27508 * 1 2 3 26 26 H 1.08002 * 119.99708 * 179.71665 * 2 1 3 27 27 H 1.09002 * 109.47005 * 244.72313 * 3 2 1 28 28 H 1.08999 * 109.47073 * 4.72010 * 3 2 1 29 29 H 1.08001 * 126.91155 * 0.02562 * 5 4 3 30 30 H 1.08998 * 109.47006 * 215.25166 * 7 6 5 31 31 H 1.08998 * 109.46888 * 335.25176 * 7 6 5 32 32 H 0.97006 * 120.00626 * 345.00086 * 8 7 6 33 33 H 1.09006 * 109.47391 * 300.00384 * 12 9 8 34 34 H 1.09000 * 109.47326 * 60.00080 * 12 9 8 35 35 H 1.09003 * 109.46982 * 299.99934 * 13 12 9 36 36 H 1.09000 * 109.46975 * 59.99785 * 13 12 9 37 37 H 0.96995 * 120.00616 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9891 1.3347 1.1353 5 6 4.3231 1.5494 1.0652 6 6 4.7812 1.4946 2.3376 7 6 6.2071 1.6744 2.7912 8 7 6.4198 3.0670 3.1930 9 16 7.7594 3.4789 4.0753 10 8 7.6176 4.8754 4.2964 11 8 7.7597 2.5617 5.1606 12 6 9.1533 3.1488 2.9625 13 6 10.4646 3.4935 3.6714 14 6 11.6227 3.2188 2.7472 15 1 11.4416 2.8369 1.7533 16 6 12.9135 3.4559 3.1700 17 7 13.1340 3.9214 4.3801 18 14 14.3489 3.1160 2.0241 19 1 14.6491 4.3353 1.2313 20 1 15.5423 2.7393 2.8237 21 1 13.9968 2.0030 1.1061 22 7 3.7202 1.2445 3.1129 23 7 2.6736 1.1553 2.3702 24 1 -0.5400 0.9353 -0.0045 25 1 -0.5400 -0.9353 0.0045 26 1 1.8500 -0.9353 0.0046 27 1 2.6252 1.4004 -0.9293 28 1 1.3582 2.1318 0.0846 29 1 4.9050 1.7303 0.1735 30 1 6.4044 1.0175 3.6383 31 1 6.8828 1.4251 1.9730 32 1 5.7760 3.7480 2.9423 33 1 9.1562 2.0943 2.6865 34 1 9.0540 3.7590 2.0648 35 1 10.4619 4.5480 3.9477 36 1 10.5637 2.8831 4.5690 37 1 14.0420 4.0879 4.6777 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425177270.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:20 Heat of formation + Delta-G solvation = 42.167921 kcal Electronic energy + Delta-G solvation = -21252.492940 eV Core-core repulsion = 17774.040031 eV Total energy + Delta-G solvation = -3478.452909 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.53052 -36.76932 -36.50036 -35.48411 -35.26068 -33.87679 -33.03488 -31.22080 -31.14538 -27.71375 -26.18413 -25.58742 -22.49433 -21.83461 -21.62042 -20.54537 -18.92957 -17.98433 -17.37742 -16.65474 -16.51638 -15.94232 -15.74211 -15.46007 -15.07406 -14.65924 -14.52790 -14.26003 -14.05276 -13.36102 -13.28220 -12.75101 -12.49594 -12.17620 -11.91264 -11.73606 -11.58017 -11.51861 -11.44678 -11.09329 -11.07608 -10.94537 -10.47577 -10.40534 -10.36685 -10.16897 -9.79254 -9.55239 -9.47375 -9.01170 -8.49383 -6.11366 -4.16985 0.78955 1.24229 1.36502 2.22713 2.27073 3.26244 3.29894 3.32599 3.35055 3.85768 4.02940 4.18118 4.30990 4.39550 4.41399 4.51456 4.71689 4.79808 4.85828 5.13345 5.20270 5.23763 5.27080 5.62032 5.67665 5.71156 5.81580 5.87334 5.91354 5.96135 6.26199 6.50295 7.09079 7.32436 7.38715 7.81304 8.18575 8.27785 8.86400 9.47591 10.99635 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.025710 B = 0.002769 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.821069 B =10111.277776 C =10862.669425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.183 4.183 3 C 0.145 3.855 4 N -0.293 5.293 5 C -0.035 4.035 6 C -0.027 4.027 7 C 0.204 3.796 8 N -1.123 6.123 9 S 2.594 3.406 10 O -0.966 6.966 11 O -0.963 6.963 12 C -0.590 4.590 13 C 0.027 3.973 14 C -0.520 4.520 15 H 0.061 0.939 16 C 0.057 3.943 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 N -0.250 5.250 23 N -0.080 5.080 24 H 0.103 0.897 25 H 0.109 0.891 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.195 0.805 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.413 0.587 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.462 -6.560 -13.702 27.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.202 4.202 3 C 0.025 3.975 4 N -0.086 5.086 5 C -0.186 4.186 6 C -0.166 4.166 7 C 0.075 3.925 8 N -0.881 5.881 9 S 2.691 3.309 10 O -0.957 6.957 11 O -0.952 6.952 12 C -0.723 4.723 13 C -0.012 4.012 14 C -0.559 4.559 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.528 5.528 18 Si 0.728 3.272 19 H -0.205 1.205 20 H -0.210 1.210 21 H -0.198 1.198 22 N -0.118 5.118 23 N -0.059 5.059 24 H 0.121 0.879 25 H 0.127 0.873 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.121 0.879 29 H 0.212 0.788 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.245 0.755 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.053 0.947 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.401 -6.607 -11.634 26.956 hybrid contribution 1.493 0.106 -2.305 2.748 sum -21.908 -6.501 -13.939 26.768 Atomic orbital electron populations 1.24012 0.95462 1.02912 0.96045 1.22846 0.96411 0.97295 1.03611 1.21194 0.92114 0.98442 0.85783 1.47452 1.07213 1.45877 1.08023 1.23526 0.84778 1.08843 1.01489 1.21912 0.97118 1.07552 0.90041 1.19398 0.88442 0.83439 1.01172 1.55848 1.41843 1.14410 1.75956 1.05565 0.75284 0.74071 0.75936 1.93555 1.85385 1.31898 1.84813 1.93552 1.85998 1.65329 1.50367 1.30458 1.16286 1.10518 1.15043 1.18969 0.87859 0.98218 0.96171 1.20997 0.90255 1.44726 0.99948 0.92056 1.25077 0.99178 0.94987 0.95331 1.69954 1.21370 1.44182 1.17269 0.86470 0.81691 0.78588 0.80500 1.20525 1.21037 1.19799 1.75174 0.95520 1.15112 1.25976 1.78368 1.21503 1.19054 0.86988 0.87855 0.87300 0.86357 0.86652 0.87858 0.78798 0.88286 0.89718 0.75455 0.86215 0.86070 0.94821 0.94717 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.58 14.32 29.01 0.42 -0.16 16 2 C -0.18 -0.88 9.63 -36.03 -0.35 -1.22 16 3 C 0.15 0.63 6.90 -5.19 -0.04 0.60 16 4 N -0.29 -2.54 3.43 -62.44 -0.21 -2.75 16 5 C -0.03 -0.28 11.50 -17.05 -0.20 -0.48 16 6 C -0.03 -0.31 6.64 -82.77 -0.55 -0.86 16 7 C 0.20 2.34 6.69 -5.19 -0.03 2.30 16 8 N -1.12 -14.77 5.88 -11.66 -0.07 -14.84 16 9 S 2.59 45.91 5.46 -107.50 -0.59 45.32 16 10 O -0.97 -20.14 18.08 -57.54 -1.04 -21.18 16 11 O -0.96 -20.22 17.50 -57.54 -1.01 -21.23 16 12 C -0.59 -10.74 6.01 37.16 0.22 -10.52 16 13 C 0.03 0.67 4.98 -27.89 -0.14 0.54 16 14 C -0.52 -14.12 9.11 -34.44 -0.31 -14.44 16 15 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 18 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 N -0.25 -3.62 12.41 33.29 0.41 -3.21 16 23 N -0.08 -1.01 12.92 60.35 0.78 -0.23 16 24 H 0.10 0.30 7.84 -52.49 -0.41 -0.11 16 25 H 0.11 0.34 8.06 -52.49 -0.42 -0.08 16 26 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 27 H 0.12 0.16 8.07 -51.93 -0.42 -0.26 16 28 H 0.10 0.34 7.79 -51.93 -0.40 -0.06 16 29 H 0.20 0.78 8.06 -52.49 -0.42 0.36 16 30 H 0.10 1.25 7.69 -51.93 -0.40 0.85 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.41 4.87 8.61 -34.47 -0.30 4.57 16 33 H 0.12 1.88 8.14 -51.92 -0.42 1.46 16 34 H 0.12 1.94 8.14 -51.92 -0.42 1.52 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 342.00 15.07 5.15 5.15 Total: -1.00 -38.68 342.00 -6.78 -45.46 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.85 Total: -0.10 kcal Atomic # 6 Polarization: -21.67 SS G_CDS: -1.07 Total: -22.75 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: 1.65 Total: -46.64 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -2.05 Total: -42.41 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 45.91 SS G_CDS: -0.59 Total: 45.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -38.68 -6.78 -45.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425177270.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.628 kcal (2) G-P(sol) polarization free energy of solvation -38.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds