Wall clock time and date at job start Tue Mar 31 2020 04:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00207 * 2 1 4 4 H 1.48496 * 109.46908 * 264.99192 * 3 2 1 5 5 H 1.48502 * 109.46888 * 24.98825 * 3 2 1 6 6 H 1.48495 * 109.47452 * 144.99002 * 3 2 1 7 7 C 1.37878 * 119.99998 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99836 * 185.28282 * 7 2 1 9 9 C 1.50699 * 120.00081 * 5.27928 * 7 2 1 10 10 O 1.42900 * 110.88264 * 60.56634 * 9 7 2 11 11 C 1.55154 * 111.00655 * 184.48789 * 9 7 2 12 12 C 1.54329 * 103.02256 * 153.38227 * 11 9 7 13 13 N 1.47026 * 107.26260 * 338.14502 * 12 11 9 14 14 C 1.34780 * 125.64286 * 178.85014 * 13 12 11 15 15 O 1.21590 * 119.99827 * 179.68967 * 14 13 12 16 16 N 1.34772 * 120.00279 * 359.68813 * 14 13 12 17 17 C 1.46506 * 119.99999 * 180.02562 * 16 14 13 18 18 H 1.08994 * 109.30709 * 34.74794 * 17 16 14 19 19 C 1.52565 * 109.49243 * 154.43313 * 17 16 14 20 20 C 1.52589 * 110.83772 * 190.69879 * 19 17 16 21 21 C 1.53095 * 109.95645 * 289.36898 * 20 19 17 22 22 S 1.81749 * 108.83940 * 63.02699 * 21 20 19 23 23 C 1.53106 * 109.38713 * 275.00052 * 17 16 14 24 24 C 1.47415 * 108.70408 * 358.58202 * 13 12 11 25 25 H 0.97006 * 120.00133 * 0.02562 * 1 2 3 26 26 H 0.96701 * 114.00254 * 290.68695 * 10 9 7 27 27 H 1.09003 * 110.72075 * 271.94521 * 11 9 7 28 28 H 1.09002 * 110.71940 * 35.03856 * 11 9 7 29 29 H 1.08997 * 109.99524 * 218.66835 * 12 11 9 30 30 H 1.09005 * 109.77663 * 97.49605 * 12 11 9 31 31 H 0.96994 * 120.00207 * 0.02562 * 16 14 13 32 32 H 1.08997 * 109.13266 * 70.36963 * 19 17 16 33 33 H 1.08991 * 109.20482 * 311.07427 * 19 17 16 34 34 H 1.08996 * 109.38938 * 169.22122 * 20 19 17 35 35 H 1.08998 * 109.38729 * 49.51664 * 20 19 17 36 36 H 1.09001 * 109.57722 * 303.22145 * 21 20 19 37 37 H 1.09005 * 109.57454 * 182.83204 * 21 20 19 38 38 H 1.08992 * 109.57524 * 57.01639 * 23 17 16 39 39 H 1.09004 * 109.57409 * 296.76424 * 23 17 16 40 40 H 1.08997 * 110.36767 * 143.19577 * 24 13 12 41 41 H 1.09001 * 110.37027 * 265.40870 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6025 1.9852 -1.3947 5 1 1.3976 2.6809 0.5915 6 1 3.4897 1.4731 0.8032 7 6 2.0045 -1.1941 0.0005 8 1 3.0811 -1.1960 0.0867 9 6 1.2558 -2.4964 -0.1190 10 8 0.5284 -2.5550 -1.3476 11 6 2.2183 -3.7058 0.0165 12 6 1.2994 -4.8231 0.5540 13 7 0.1421 -4.1709 1.1840 14 6 -0.9018 -4.8041 1.7549 15 8 -1.8051 -4.1602 2.2528 16 7 -0.9445 -6.1511 1.7738 17 6 -2.0795 -6.8393 2.3939 18 1 -2.9877 -6.2608 2.2251 19 6 -2.2395 -8.2220 1.7691 20 6 -3.5577 -8.8612 2.1958 21 6 -3.4953 -9.2498 3.6753 22 16 -3.2872 -7.7428 4.6696 23 6 -1.8332 -6.9711 3.8992 24 6 0.3157 -2.7098 1.0936 25 1 -0.4850 0.8401 -0.0004 26 1 -0.2209 -1.9452 -1.3905 27 1 2.6341 -3.9783 -0.9535 28 1 3.0146 -3.4870 0.7281 29 1 1.8336 -5.4227 1.2909 30 1 0.9661 -5.4546 -0.2696 31 1 -0.2238 -6.6648 1.3770 32 1 -1.4129 -8.8564 2.0891 33 1 -2.2204 -8.1292 0.6834 34 1 -3.7390 -9.7523 1.5949 35 1 -4.3705 -8.1513 2.0420 36 1 -2.6498 -9.9171 3.8422 37 1 -4.4204 -9.7508 3.9606 38 1 -1.6722 -5.9833 4.3308 39 1 -0.9548 -7.5929 4.0725 40 1 -0.6443 -2.2238 0.9194 41 1 0.7751 -2.3252 2.0042 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591976510.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:27 Heat of formation + Delta-G solvation = -106.250589 kcal Electronic energy + Delta-G solvation = -23026.200040 eV Core-core repulsion = 19644.851565 eV Total energy + Delta-G solvation = -3381.348475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.37404 -39.42357 -37.93665 -36.03044 -34.73485 -34.24004 -32.10675 -30.79341 -29.46209 -28.28829 -26.93825 -24.59074 -23.44368 -21.94647 -21.45110 -20.90457 -19.22862 -18.78228 -18.12183 -17.19122 -16.88549 -16.67260 -16.33782 -16.15323 -15.50805 -15.40547 -15.15178 -14.78317 -14.59168 -14.42568 -14.02448 -13.95981 -13.71097 -13.50774 -13.26255 -12.82590 -12.62632 -12.47194 -12.43483 -12.32662 -12.23882 -12.08846 -12.06837 -11.84704 -11.28960 -11.19457 -10.89523 -10.66314 -10.30659 -10.22107 -9.36833 -8.73422 -8.23437 -6.40019 0.70332 1.40726 1.43293 1.44951 1.53178 1.80392 2.14539 2.38927 3.02058 3.08789 3.56217 3.69473 3.80391 3.86896 4.00699 4.07579 4.11946 4.19861 4.35037 4.40908 4.51379 4.59730 4.63951 4.76527 4.78389 4.85007 4.99097 5.06679 5.07483 5.10940 5.23703 5.30540 5.37110 5.45880 5.47181 5.76406 6.07553 6.18500 6.66657 7.05782 7.26645 7.34929 7.56565 8.81518 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.032402 B = 0.003288 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.932214 B = 8514.215089 C = 8867.861993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.026 3.974 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.069 0.931 9 C 0.232 3.768 10 O -0.584 6.584 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.710 3.290 15 O -0.643 6.643 16 N -0.722 5.722 17 C 0.166 3.834 18 H 0.063 0.937 19 C -0.128 4.128 20 C -0.114 4.114 21 C -0.070 4.070 22 S -0.307 6.307 23 C -0.080 4.080 24 C 0.130 3.870 25 H 0.268 0.732 26 H 0.370 0.630 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.411 0.589 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.043 0.957 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.316 -21.261 3.250 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.175 4.175 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.594 4.594 8 H 0.087 0.913 9 C 0.192 3.808 10 O -0.391 6.391 11 C -0.149 4.149 12 C -0.015 4.015 13 N -0.370 5.370 14 C 0.412 3.588 15 O -0.525 6.525 16 N -0.379 5.379 17 C 0.058 3.942 18 H 0.082 0.918 19 C -0.166 4.166 20 C -0.154 4.154 21 C -0.218 4.218 22 S -0.081 6.081 23 C -0.230 4.230 24 C 0.006 3.994 25 H 0.077 0.923 26 H 0.218 0.782 27 H 0.105 0.895 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.248 0.752 32 H 0.112 0.888 33 H 0.106 0.894 34 H 0.129 0.871 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.122 0.878 40 H 0.061 0.939 41 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.327 -20.848 4.393 21.432 hybrid contribution 0.691 1.559 -0.759 1.867 sum -1.635 -19.288 3.633 19.696 Atomic orbital electron populations 1.69894 1.07206 1.28271 1.49933 1.25824 0.95705 1.02854 0.93116 0.85496 0.78625 0.78643 0.78414 1.19969 1.21349 1.18940 1.21788 0.94251 0.91454 1.51909 0.91316 1.19860 0.87742 0.93167 0.80039 1.86114 1.47723 1.65377 1.39870 1.22593 0.97071 0.93321 1.01878 1.22131 0.86145 0.95834 0.97373 1.47908 1.21236 1.08269 1.59598 1.15782 0.81397 0.82715 0.78950 1.90871 1.40103 1.66909 1.54605 1.45016 1.26352 1.03088 1.63456 1.21059 0.88642 0.94466 0.89985 0.91827 1.21789 0.99978 0.92725 1.02138 1.21696 0.96851 1.02333 0.94488 1.23631 1.07421 0.94566 0.96172 1.87230 1.41914 1.29836 1.49167 1.23799 0.98236 1.03026 0.97902 1.22665 1.00026 0.77347 0.99363 0.92326 0.78243 0.89541 0.89443 0.89104 0.90569 0.75248 0.88773 0.89390 0.87091 0.91702 0.87780 0.86056 0.90797 0.87800 0.93868 0.94541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.72 10.80 21.45 0.23 -50.49 16 2 C 0.03 1.38 5.32 84.66 0.45 1.83 16 3 Si 0.96 42.19 29.54 68.60 2.03 44.22 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.56 -28.96 8.26 25.60 0.21 -28.75 16 8 H 0.07 3.45 7.79 -2.91 -0.02 3.43 16 9 C 0.23 11.14 0.86 -10.15 -0.01 11.13 16 10 O -0.58 -29.65 13.14 -148.98 -1.96 -31.61 16 11 C -0.11 -4.05 6.13 31.78 0.19 -3.85 16 12 C 0.11 3.29 6.15 86.73 0.53 3.82 16 13 N -0.63 -25.55 3.33 -829.77 -2.76 -28.31 16 14 C 0.71 28.42 8.45 179.05 1.51 29.94 16 15 O -0.64 -32.31 16.25 -4.00 -0.06 -32.37 16 16 N -0.72 -19.68 5.03 -458.33 -2.31 -21.99 16 17 C 0.17 4.00 2.31 44.88 0.10 4.11 16 18 H 0.06 2.03 7.48 -2.39 -0.02 2.01 16 19 C -0.13 -1.82 5.07 30.31 0.15 -1.66 16 20 C -0.11 -1.36 5.75 30.49 0.18 -1.19 16 21 C -0.07 -0.88 6.45 72.01 0.46 -0.41 16 22 S -0.31 -6.98 22.33 -56.49 -1.26 -8.24 16 23 C -0.08 -1.94 6.02 72.02 0.43 -1.51 16 24 C 0.13 6.43 5.35 86.86 0.46 6.89 16 25 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 26 H 0.37 19.81 7.71 -74.06 -0.57 19.24 16 27 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 28 H 0.09 2.99 8.03 -2.39 -0.02 2.97 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.41 8.28 7.59 -92.71 -0.70 7.58 16 32 H 0.09 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 1.02 8.06 -2.39 -0.02 1.00 16 36 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 39 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.04 2.49 7.26 -2.39 -0.02 2.47 16 41 H 0.04 1.91 8.03 -2.39 -0.02 1.89 16 Total: -1.00 -69.89 339.49 -1.63 -71.53 By element: Atomic # 1 Polarization: 37.16 SS G_CDS: -0.23 Total: 36.92 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 4.69 Total: 20.35 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -4.83 Total: -100.79 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -2.02 Total: -63.98 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: -6.98 SS G_CDS: -1.26 Total: -8.24 kcal Total: -69.89 -1.63 -71.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591976510.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.725 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds