Wall clock time and date at job start Tue Mar 31 2020 04:39:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08994 * 108.73591 * 2 1 4 4 C 1.53700 * 108.88648 * 241.48152 * 2 1 3 5 5 S 1.83396 * 104.97305 * 236.38398 * 4 2 1 6 6 C 1.83998 * 95.84758 * 340.25302 * 5 4 2 7 7 C 1.52943 * 108.88377 * 118.50631 * 2 1 3 8 8 H 1.09001 * 109.45479 * 31.04997 * 7 2 1 9 9 N 1.46504 * 109.60166 * 270.81994 * 7 2 1 10 10 C 1.34777 * 119.99854 * 154.00830 * 9 7 2 11 11 O 1.21593 * 119.99953 * 0.02562 * 10 9 7 12 12 N 1.34773 * 120.00097 * 180.27545 * 10 9 7 13 13 C 1.47424 * 125.64847 * 359.42578 * 12 10 9 14 14 C 1.55124 * 104.72581 * 155.81631 * 13 12 10 15 15 C 1.55157 * 101.48746 * 37.28923 * 14 13 12 16 16 O 1.42900 * 110.71805 * 82.70019 * 15 14 13 17 17 C 1.50699 * 110.71911 * 205.96934 * 15 14 13 18 18 H 1.07992 * 120.00541 * 354.98156 * 17 15 14 19 19 C 1.37880 * 119.99807 * 174.97762 * 17 15 14 20 20 N 1.31519 * 119.99642 * 0.02562 * 19 17 15 21 21 Si 1.86795 * 120.00055 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47248 * 60.00032 * 21 19 17 23 23 H 1.48506 * 109.47269 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47185 * 299.99845 * 21 19 17 25 25 C 1.47023 * 125.65265 * 179.72599 * 12 10 9 26 26 H 1.08994 * 109.46715 * 301.49753 * 1 2 3 27 27 H 1.08998 * 109.46880 * 61.49475 * 1 2 3 28 28 H 1.09000 * 109.47112 * 181.49510 * 1 2 3 29 29 H 1.09002 * 110.33741 * 117.51155 * 4 2 1 30 30 H 1.08994 * 110.43359 * 355.30502 * 4 2 1 31 31 H 1.09000 * 111.12870 * 277.43965 * 6 5 4 32 32 H 1.09000 * 111.12779 * 153.26111 * 6 5 4 33 33 H 0.97000 * 120.00410 * 334.01555 * 9 7 2 34 34 H 1.09007 * 110.36232 * 274.73996 * 13 12 10 35 35 H 1.09004 * 110.37027 * 37.06173 * 13 12 10 36 36 H 1.09004 * 111.18844 * 279.18730 * 14 13 12 37 37 H 1.09001 * 110.90994 * 155.27228 * 14 13 12 38 38 H 0.96696 * 114.00505 * 185.02195 * 16 15 14 39 39 H 0.97005 * 119.99601 * 179.97438 * 20 19 17 40 40 H 1.09003 * 109.88289 * 300.44400 * 25 12 10 41 41 H 1.09000 * 109.88003 * 61.60218 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8802 1.0322 0.0000 4 6 2.0276 -0.6943 -1.2778 5 16 3.1090 -2.0532 -0.6883 6 6 3.4013 -1.3474 0.9856 7 6 2.0251 -0.6906 1.2717 8 1 1.3095 -1.4564 1.5710 9 7 2.1655 0.2971 2.3446 10 6 2.0707 -0.0889 3.6324 11 8 1.8692 -1.2569 3.9038 12 7 2.1943 0.8206 4.6193 13 6 2.4456 2.2613 4.4334 14 6 1.8944 2.9271 5.7215 15 6 2.2829 1.8817 6.8002 16 8 3.6402 2.0590 7.2103 17 6 1.3520 1.9645 7.9825 18 1 0.6010 2.7393 8.0254 19 6 1.4592 1.0508 9.0095 20 7 2.3741 0.1074 8.9576 21 14 0.3050 1.1529 10.4747 22 1 -1.0982 1.0079 10.0105 23 1 0.6239 0.0640 11.4329 24 1 0.4713 2.4674 11.1452 25 6 2.1071 0.5393 6.0597 26 1 -0.3632 0.5369 0.8762 27 1 -0.3633 0.4904 -0.9031 28 1 -0.3633 -1.0273 0.0268 29 1 2.5969 0.0040 -1.8913 30 1 1.1876 -1.0970 -1.8438 31 1 4.1959 -0.6016 0.9643 32 1 3.6205 -2.1319 1.7099 33 1 2.3265 1.2288 2.1281 34 1 3.5146 2.4501 4.3337 35 1 1.9112 2.6299 3.5578 36 1 0.8127 3.0509 5.6691 37 1 2.3867 3.8817 5.9073 38 1 3.9564 1.3839 7.8263 39 1 2.4498 -0.5352 9.6803 40 1 1.1329 0.1108 6.2954 41 1 2.8984 -0.1513 6.3511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592023428.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:30 Heat of formation + Delta-G solvation = -80.170409 kcal Electronic energy + Delta-G solvation = -23121.379085 eV Core-core repulsion = 19741.161532 eV Total energy + Delta-G solvation = -3380.217554 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -39.95824 -38.07953 -36.79882 -34.31065 -33.22410 -32.24771 -30.42902 -29.46585 -27.83557 -27.41242 -25.19635 -23.77075 -22.49467 -20.65134 -19.76390 -19.42517 -17.68193 -17.09152 -16.99410 -16.02913 -15.43286 -15.16103 -14.71234 -14.65272 -14.26381 -14.02927 -13.96789 -13.42101 -13.13876 -12.93649 -12.83631 -12.37196 -12.24105 -11.99191 -11.83266 -11.68911 -11.58861 -11.43061 -11.08179 -11.01099 -10.84447 -10.71658 -10.52252 -10.25219 -10.19902 -9.68899 -9.34208 -9.00766 -8.69355 -8.35268 -7.90884 -7.81956 -6.29564 -4.38484 1.61371 2.08314 3.03077 3.22294 3.27889 3.29558 3.60988 4.22483 4.24944 4.29907 4.45594 4.50301 4.79546 4.98061 5.00451 5.12906 5.24872 5.30107 5.31438 5.54695 5.55548 5.63599 5.70073 5.75298 5.81246 5.93630 5.96967 6.06263 6.46522 6.59746 6.66927 6.84926 6.92485 7.21014 7.28018 7.55714 7.71509 8.01266 8.43653 8.64797 9.02789 9.27128 9.36087 10.78210 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.028471 B = 0.003398 C = 0.003362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.223697 B = 8238.348665 C = 8326.869424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.084 0.916 4 C -0.063 4.063 5 S -0.294 6.294 6 C -0.076 4.076 7 C 0.168 3.832 8 H 0.106 0.894 9 N -0.743 5.743 10 C 0.716 3.284 11 O -0.592 6.592 12 N -0.628 5.628 13 C 0.103 3.897 14 C -0.116 4.116 15 C 0.248 3.752 16 O -0.585 6.585 17 C -0.540 4.540 18 H 0.066 0.934 19 C 0.071 3.929 20 N -0.893 5.893 21 Si 0.904 3.096 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 C 0.123 3.877 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.393 0.607 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.382 0.618 39 H 0.271 0.729 40 H 0.065 0.935 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 2.571 -17.503 17.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.102 0.898 4 C -0.212 4.212 5 S -0.068 6.068 6 C -0.226 4.226 7 C 0.060 3.940 8 H 0.124 0.876 9 N -0.400 5.400 10 C 0.417 3.583 11 O -0.471 6.471 12 N -0.365 5.365 13 C -0.021 4.021 14 C -0.154 4.154 15 C 0.208 3.792 16 O -0.394 6.394 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.132 4.132 20 N -0.531 5.531 21 Si 0.731 3.269 22 H -0.200 1.200 23 H -0.211 1.211 24 H -0.200 1.200 25 C 0.001 3.999 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.228 0.772 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.232 0.768 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.516 0.979 -18.154 18.188 hybrid contribution -0.756 0.937 1.580 1.987 sum -1.272 1.916 -16.574 16.733 Atomic orbital electron populations 1.21922 0.92957 1.02882 1.02402 1.21749 0.98158 1.00599 0.92244 0.89768 1.23951 1.00744 0.97381 0.99085 1.87915 1.65729 1.34634 1.18514 1.24902 1.00614 1.03070 0.94025 1.21738 0.95292 0.91090 0.85921 0.87603 1.45206 1.79689 1.10959 1.04177 1.15514 0.78361 0.84538 0.79844 1.90904 1.57409 1.16398 1.82381 1.47986 1.73770 1.07308 1.07469 1.22293 0.99784 0.81303 0.98695 1.22762 1.00414 0.99002 0.93194 1.19494 0.81390 0.87721 0.90610 1.86104 1.29412 1.56334 1.67521 1.21446 1.17691 1.14682 1.03962 0.91604 1.25071 0.95341 0.94334 0.98464 1.69693 1.33497 1.16350 1.33607 0.86462 0.80974 0.77830 0.81652 1.20026 1.21055 1.19999 1.22882 1.01846 1.00761 0.74396 0.91802 0.92056 0.91797 0.89022 0.87892 0.88958 0.86888 0.77212 0.91939 0.92682 0.90468 0.90607 0.76754 0.91914 0.91700 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 8.67 37.16 0.32 -0.86 16 2 C -0.11 -0.93 2.88 -90.28 -0.26 -1.19 16 3 H 0.08 0.62 7.68 -51.93 -0.40 0.23 16 4 C -0.06 -0.51 6.99 37.52 0.26 -0.25 16 5 S -0.29 -3.37 23.23 -107.50 -2.50 -5.86 16 6 C -0.08 -0.93 7.14 38.29 0.27 -0.66 16 7 C 0.17 2.03 2.31 -66.82 -0.15 1.88 16 8 H 0.11 1.54 7.20 -51.93 -0.37 1.17 16 9 N -0.74 -10.14 5.05 -57.59 -0.29 -10.43 16 10 C 0.72 13.70 8.48 -86.92 -0.74 12.96 16 11 O -0.59 -13.73 16.32 5.28 0.09 -13.64 16 12 N -0.63 -12.46 3.32 -176.10 -0.59 -13.04 16 13 C 0.10 1.69 6.58 -2.41 -0.02 1.67 16 14 C -0.12 -2.20 6.24 -24.47 -0.15 -2.36 16 15 C 0.25 5.85 0.85 -89.94 -0.08 5.77 16 16 O -0.58 -14.35 13.08 -35.23 -0.46 -14.81 16 17 C -0.54 -13.88 8.12 -34.44 -0.28 -14.16 16 18 H 0.07 1.66 7.78 -52.49 -0.41 1.25 16 19 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 20 N -0.89 -23.61 10.98 55.43 0.61 -23.00 16 21 Si 0.90 20.28 29.54 -169.99 -5.02 15.26 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 C 0.12 2.93 5.24 -3.07 -0.02 2.92 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 0.73 7.64 -51.93 -0.40 0.33 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 33 H 0.39 4.38 6.78 -40.82 -0.28 4.10 16 34 H 0.06 1.01 8.14 -51.92 -0.42 0.58 16 35 H 0.05 0.71 7.28 -51.93 -0.38 0.33 16 36 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.38 9.65 7.47 45.56 0.34 9.99 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.06 1.71 7.81 -51.93 -0.41 1.30 16 41 H 0.06 1.66 7.92 -51.93 -0.41 1.25 16 LS Contribution 340.60 15.07 5.13 5.13 Total: -1.00 -29.44 340.60 -9.60 -39.04 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -5.64 Total: 13.86 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.93 Total: 7.49 kcal Atomic # 7 Polarization: -46.20 SS G_CDS: -0.27 Total: -46.47 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.37 Total: -28.45 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -2.50 Total: -5.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.44 -9.60 -39.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592023428.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.132 kcal (2) G-P(sol) polarization free energy of solvation -29.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds