Wall clock time and date at job start Tue Mar 31 2020 03:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38630 * 120.44629 * 2 1 4 4 C 1.38570 * 118.39862 * 180.02562 * 3 2 1 5 5 N 1.32345 * 119.10748 * 359.97438 * 4 3 2 6 6 C 1.31774 * 120.82013 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.12542 * 180.02562 * 6 5 4 8 8 N 1.46498 * 109.47212 * 89.99400 * 7 6 5 9 9 S 1.65602 * 119.99612 * 164.72359 * 8 7 6 10 10 O 1.42104 * 106.40175 * 178.81816 * 9 8 7 11 11 O 1.42095 * 106.40656 * 311.73868 * 9 8 7 12 12 N 1.65599 * 107.21657 * 65.28266 * 9 8 7 13 13 C 1.46494 * 120.00381 * 89.99744 * 12 9 8 14 14 C 1.46504 * 119.99877 * 269.99379 * 12 9 8 15 15 C 1.50704 * 109.46887 * 94.99864 * 14 12 9 16 16 H 1.07997 * 119.99814 * 0.02562 * 15 14 12 17 17 C 1.37878 * 119.99679 * 180.02562 * 15 14 12 18 18 N 1.31512 * 120.00172 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99670 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47586 * 89.99853 * 19 17 15 21 21 H 1.48503 * 109.47097 * 210.00309 * 19 17 15 22 22 H 1.48507 * 109.47346 * 329.99730 * 19 17 15 23 23 N 1.31813 * 121.75404 * 0.26967 * 6 5 4 24 24 H 1.09003 * 109.46802 * 89.99892 * 1 2 3 25 25 H 1.08999 * 109.47273 * 209.99842 * 1 2 3 26 26 H 1.08998 * 109.47245 * 330.00018 * 1 2 3 27 27 H 1.08006 * 120.79866 * 0.02562 * 3 2 1 28 28 H 1.07999 * 120.44535 * 180.02562 * 4 3 2 29 29 H 1.08996 * 109.47013 * 329.99706 * 7 6 5 30 30 H 1.08999 * 109.47128 * 209.99919 * 7 6 5 31 31 H 0.97001 * 120.00384 * 345.00836 * 8 7 6 32 32 H 1.09006 * 109.47452 * 89.99818 * 13 12 9 33 33 H 1.09002 * 109.47670 * 209.99980 * 13 12 9 34 34 H 1.09002 * 109.47109 * 329.99809 * 13 12 9 35 35 H 1.08994 * 109.47518 * 215.00154 * 14 12 9 36 36 H 1.09000 * 109.47078 * 335.00581 * 14 12 9 37 37 H 0.96999 * 119.99728 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1963 -0.0329 -0.0005 6 6 3.4957 -1.1490 -0.0005 7 6 4.2207 -2.4702 0.0001 8 7 4.4552 -2.8979 1.3815 9 16 4.8841 -4.4651 1.7015 10 8 5.0633 -4.5528 3.1084 11 8 3.9742 -5.2852 0.9813 12 7 6.3746 -4.7135 1.0239 13 6 7.5866 -4.4516 1.8038 14 6 6.4810 -5.1952 -0.3556 15 6 6.6519 -4.0218 -1.2856 16 1 6.6790 -3.0177 -0.8888 17 6 6.7737 -4.2301 -2.6431 18 7 6.7402 -5.4528 -3.1264 19 14 6.9862 -2.7757 -3.7959 20 1 8.4326 -2.4831 -3.9624 21 1 6.3915 -3.1003 -5.1173 22 1 6.3034 -1.5871 -3.2244 23 7 2.1776 -1.1406 -0.0058 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6899 2.1420 0.0004 28 1 4.1744 2.0566 -0.0001 29 1 5.1758 -2.3607 -0.5134 30 1 3.6154 -3.2170 -0.5137 31 1 4.3553 -2.2642 2.1091 32 1 7.8794 -5.3570 2.3355 33 1 8.3911 -4.1474 1.1341 34 1 7.3915 -3.6554 2.5222 35 1 7.3423 -5.8572 -0.4439 36 1 5.5751 -5.7402 -0.6210 37 1 6.8263 -5.5993 -4.0813 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599346123.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:36 Heat of formation + Delta-G solvation = -51.579566 kcal Electronic energy + Delta-G solvation = -22887.084862 eV Core-core repulsion = 19404.566757 eV Total energy + Delta-G solvation = -3482.518105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -42.11064 -38.37148 -37.28206 -36.93630 -36.65595 -35.30588 -34.47317 -33.28303 -29.70098 -29.52892 -27.91410 -26.76213 -24.39548 -24.22020 -23.10366 -20.51170 -19.06650 -18.81015 -18.50587 -18.35993 -17.59658 -16.96097 -16.72021 -16.26293 -16.10798 -15.55507 -15.19361 -14.96330 -14.73919 -14.18845 -14.11037 -13.96995 -13.91122 -13.74554 -13.40375 -13.22062 -13.16521 -13.09877 -13.00700 -12.90730 -12.45818 -12.40470 -11.88772 -11.80604 -11.67844 -11.60195 -10.57514 -10.53549 -10.45479 -10.25533 -9.78165 -8.16195 -6.28828 -0.47301 -0.07576 0.12795 1.42051 1.43970 1.53350 1.94031 2.41964 2.52731 2.73897 2.79068 3.13096 3.16577 3.45686 3.60120 3.91881 4.08118 4.14456 4.26851 4.44455 4.53649 4.64161 4.72842 4.74039 4.78741 4.89053 4.92742 5.09319 5.09548 5.32362 5.47504 5.50506 5.75716 5.82160 6.03803 6.08728 6.11192 6.82978 7.09383 7.40616 8.92038 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.006700 C = 0.004908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.023381 B = 4178.317490 C = 5703.031085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.151 3.849 3 C -0.209 4.209 4 C 0.136 3.864 5 N -0.532 5.532 6 C 0.301 3.699 7 C 0.189 3.811 8 N -1.107 6.107 9 S 2.808 3.192 10 O -1.002 7.002 11 O -1.010 7.010 12 N -1.000 6.000 13 C 0.098 3.902 14 C 0.254 3.746 15 C -0.542 4.542 16 H 0.079 0.921 17 C 0.018 3.982 18 N -0.924 5.924 19 Si 0.948 3.052 20 H -0.271 1.271 21 H -0.288 1.288 22 H -0.263 1.263 23 N -0.536 5.536 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.114 0.886 27 H 0.194 0.806 28 H 0.206 0.794 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.418 0.582 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.026 0.974 36 H 0.022 0.978 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.907 16.477 6.913 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.005 3.995 3 C -0.230 4.230 4 C -0.028 4.028 5 N -0.248 5.248 6 C 0.032 3.968 7 C 0.061 3.939 8 N -0.868 5.868 9 S 2.815 3.185 10 O -0.986 6.986 11 O -0.994 6.994 12 N -0.842 5.842 13 C -0.048 4.048 14 C 0.130 3.870 15 C -0.581 4.581 16 H 0.097 0.903 17 C -0.182 4.182 18 N -0.564 5.564 19 Si 0.774 3.226 20 H -0.196 1.196 21 H -0.214 1.214 22 H -0.188 1.188 23 N -0.253 5.253 24 H 0.114 0.886 25 H 0.091 0.909 26 H 0.132 0.868 27 H 0.211 0.789 28 H 0.223 0.777 29 H 0.122 0.878 30 H 0.097 0.903 31 H 0.252 0.748 32 H 0.077 0.923 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.044 0.956 36 H 0.040 0.960 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.903 14.713 7.074 18.137 hybrid contribution 0.079 1.399 -0.864 1.647 sum -7.824 16.112 6.209 18.957 Atomic orbital electron populations 1.20911 0.85257 1.05154 1.04684 1.22574 0.99491 0.88111 0.89303 1.23236 0.96112 1.01456 1.02211 1.24010 0.93506 0.96054 0.89203 1.68250 1.42593 0.99592 1.14376 1.22816 0.86936 0.94235 0.92853 1.20038 1.00660 0.90239 0.82965 1.55538 1.86517 1.31342 1.13371 1.00952 0.72989 0.72840 0.71672 1.93535 1.87077 1.86687 1.31331 1.93536 1.63625 1.67339 1.74885 1.57508 1.21896 1.80540 1.24300 1.21483 0.87250 1.01102 0.94929 1.18860 0.97447 0.94730 0.75931 1.21887 1.50299 0.94126 0.91793 0.90319 1.25695 0.94807 0.97901 0.99807 1.70052 1.50551 1.21783 1.14003 0.85696 0.78690 0.80026 0.78228 1.19643 1.21380 1.18764 1.68146 1.09562 1.32769 1.14802 0.88619 0.90925 0.86783 0.78894 0.77720 0.87808 0.90259 0.74795 0.92296 0.90440 0.90545 0.95625 0.95976 0.92550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.22 71.23 0.73 -0.70 16 2 C 0.15 3.36 6.82 42.58 0.29 3.65 16 3 C -0.21 -3.40 9.86 22.44 0.22 -3.18 16 4 C 0.14 2.77 11.30 84.69 0.96 3.72 16 5 N -0.53 -16.25 10.33 -187.86 -1.94 -18.19 16 6 C 0.30 10.36 7.04 138.75 0.98 11.34 16 7 C 0.19 7.37 6.33 85.63 0.54 7.91 16 8 N -1.11 -39.81 6.05 -190.79 -1.15 -40.96 16 9 S 2.81 115.64 6.11 -56.49 -0.35 115.29 16 10 O -1.00 -41.30 17.21 -128.00 -2.20 -43.51 16 11 O -1.01 -49.42 16.15 -128.00 -2.07 -51.49 16 12 N -1.00 -41.92 3.23 -543.22 -1.75 -43.67 16 13 C 0.10 3.29 10.31 127.77 1.32 4.61 16 14 C 0.25 12.83 5.41 85.63 0.46 13.30 16 15 C -0.54 -27.94 8.06 25.60 0.21 -27.73 16 16 H 0.08 3.85 5.82 -2.91 -0.02 3.83 16 17 C 0.02 0.97 5.46 84.66 0.46 1.43 16 18 N -0.92 -53.31 13.29 21.45 0.28 -53.03 16 19 Si 0.95 42.28 29.54 68.60 2.03 44.31 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 N -0.54 -17.13 10.27 -176.01 -1.81 -18.94 16 24 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.11 0.77 8.10 -2.39 -0.02 0.75 16 27 H 0.19 1.21 8.06 -2.91 -0.02 1.19 16 28 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 29 H 0.10 4.37 4.86 -2.39 -0.01 4.36 16 30 H 0.08 3.43 7.74 -2.39 -0.02 3.41 16 31 H 0.42 12.87 8.64 -96.74 -0.84 12.04 16 32 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 33 H 0.08 2.56 8.07 -2.39 -0.02 2.54 16 34 H 0.08 2.22 7.79 -2.39 -0.02 2.20 16 35 H 0.03 1.35 8.11 -2.39 -0.02 1.33 16 36 H 0.02 1.26 6.91 -2.39 -0.02 1.24 16 37 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -73.98 329.21 -2.53 -76.51 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.27 Total: 19.32 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: 6.16 Total: 14.34 kcal Atomic # 7 Polarization: -168.41 SS G_CDS: -6.37 Total: -174.78 kcal Atomic # 8 Polarization: -90.72 SS G_CDS: -4.27 Total: -94.99 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.31 kcal Atomic # 16 Polarization: 115.64 SS G_CDS: -0.35 Total: 115.29 kcal Total: -73.98 -2.53 -76.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599346123.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.931 kcal (2) G-P(sol) polarization free energy of solvation -73.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds