Wall clock time and date at job start Tue Mar 31 2020 04:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86799 * 119.99813 * 2 1 4 4 H 1.48496 * 109.46863 * 269.99651 * 3 2 1 5 5 H 1.48494 * 109.47174 * 29.99668 * 3 2 1 6 6 H 1.48500 * 109.46626 * 150.00009 * 3 2 1 7 7 C 1.37872 * 119.99737 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00047 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00270 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47242 * 185.29501 * 9 7 2 11 11 C 1.46898 * 110.99621 * 286.41335 * 10 9 7 12 12 C 1.53244 * 109.33534 * 187.25056 * 11 10 9 13 13 N 1.47072 * 108.52502 * 306.17388 * 12 11 10 14 14 C 1.34780 * 120.88188 * 231.18970 * 13 12 11 15 15 O 1.21286 * 119.99721 * 5.04748 * 14 13 12 16 16 C 1.50697 * 120.00268 * 184.77542 * 14 13 12 17 17 O 1.42900 * 108.82784 * 171.56958 * 16 14 13 18 18 C 1.52333 * 108.86833 * 289.96137 * 16 14 13 19 19 C 1.54260 * 112.58878 * 120.81651 * 18 16 14 20 20 S 1.83959 * 102.57820 * 24.53013 * 19 18 16 21 21 C 1.54261 * 108.86898 * 53.03706 * 16 14 13 22 22 C 1.47073 * 118.23934 * 51.45666 * 13 12 11 23 23 C 1.46901 * 110.99898 * 50.71397 * 10 9 7 24 24 H 0.96998 * 120.00159 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47181 * 65.28828 * 9 7 2 26 26 H 1.09005 * 109.47258 * 305.29286 * 9 7 2 27 27 H 1.08998 * 109.49165 * 67.30078 * 11 10 9 28 28 H 1.08993 * 109.49318 * 307.21408 * 11 10 9 29 29 H 1.09002 * 109.62789 * 186.45981 * 12 11 10 30 30 H 1.09005 * 109.78726 * 65.98321 * 12 11 10 31 31 H 0.96696 * 114.00403 * 305.51595 * 17 16 14 32 32 H 1.08994 * 108.87105 * 241.64067 * 18 16 14 33 33 H 1.08998 * 108.86831 * 0.02562 * 18 16 14 34 34 H 1.09000 * 110.78871 * 266.25824 * 19 18 16 35 35 H 1.08998 * 110.94947 * 142.87513 * 19 18 16 36 36 H 1.08997 * 110.78693 * 332.92900 * 21 16 14 37 37 H 1.09000 * 110.78550 * 96.37915 * 21 16 14 38 38 H 1.08996 * 109.63030 * 68.25421 * 22 13 12 39 39 H 1.08999 * 109.63230 * 188.83742 * 22 13 12 40 40 H 1.08994 * 109.49574 * 292.70875 * 23 10 9 41 41 H 1.09006 * 109.49174 * 52.76382 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2004 -3.6128 0.1290 11 6 2.9403 -3.8207 -1.1229 12 6 3.7829 -5.0956 -1.0086 13 7 4.6177 -4.9973 0.1983 14 6 5.9465 -5.2148 0.1398 15 8 6.4833 -5.4052 -0.9310 16 6 6.7664 -5.2151 1.4043 17 8 8.0892 -5.6592 1.0961 18 6 6.8405 -3.7925 1.9438 19 6 6.2636 -3.6684 3.3691 20 16 6.4472 -5.3770 4.0257 21 6 6.1318 -6.1978 2.4100 22 6 3.9631 -4.6613 1.4717 23 6 3.1144 -3.3977 1.2588 24 1 -0.4850 0.8400 -0.0004 25 1 0.6977 -2.5992 -0.9332 26 1 0.5548 -2.5168 0.8391 27 1 3.5942 -2.9678 -1.3049 28 1 2.2364 -3.9227 -1.9488 29 1 4.4200 -5.1934 -1.8876 30 1 3.1291 -5.9644 -0.9319 31 1 8.1223 -6.5148 0.6469 32 1 7.8828 -3.4741 1.9564 33 1 6.2815 -3.1339 1.2791 34 1 5.2138 -3.3769 3.3375 35 1 6.8422 -2.9613 3.9635 36 1 5.0616 -6.2986 2.2296 37 1 6.6256 -7.1686 2.3663 38 1 3.3239 -5.4871 1.7839 39 1 4.7194 -4.4718 2.2334 40 1 3.7657 -2.5507 1.0436 41 1 2.5366 -3.1925 2.1600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204349.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:03 Heat of formation + Delta-G solvation = -53.561771 kcal Electronic energy + Delta-G solvation = -24008.232914 eV Core-core repulsion = 20629.169197 eV Total energy + Delta-G solvation = -3379.063716 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 300.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.99317 -38.11637 -37.08706 -35.13625 -33.72043 -32.38234 -30.77506 -29.74766 -28.25872 -26.27625 -25.07589 -23.47077 -22.82607 -21.72006 -20.41909 -19.21937 -17.74955 -17.18426 -16.65706 -16.45284 -15.95821 -15.50580 -14.97959 -14.72686 -14.65159 -14.21495 -14.10802 -13.84423 -13.58358 -12.97682 -12.81929 -12.74191 -12.41190 -12.20889 -12.16153 -11.90848 -11.69533 -11.27581 -11.16750 -11.09720 -10.99812 -10.78438 -10.68480 -10.45400 -10.36606 -9.96330 -9.75753 -9.46369 -8.63858 -8.54365 -7.94665 -7.38461 -6.14941 -4.24859 1.48595 1.87654 2.44399 2.89098 3.19290 3.27121 3.28416 3.70811 3.98963 4.11866 4.30313 4.47382 4.63394 4.70851 4.79492 4.95575 5.10276 5.14480 5.18577 5.33744 5.39375 5.49578 5.50380 5.58545 5.67674 5.72641 5.83326 5.94487 6.28049 6.46042 6.52797 6.55770 7.07821 7.17492 7.37152 7.39038 7.76290 7.82832 8.00353 8.06799 8.14715 8.84435 9.43001 10.90403 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.017907 B = 0.004834 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.243879 B = 5791.112190 C = 6295.362597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.554 4.554 8 H 0.056 0.944 9 C 0.187 3.813 10 N -0.539 5.539 11 C 0.048 3.952 12 C 0.113 3.887 13 N -0.598 5.598 14 C 0.489 3.511 15 O -0.535 6.535 16 C 0.127 3.873 17 O -0.525 6.525 18 C -0.120 4.120 19 C -0.074 4.074 20 S -0.265 6.265 21 C -0.110 4.110 22 C 0.084 3.916 23 C 0.052 3.948 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.384 0.616 32 H 0.103 0.897 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.047 0.953 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.530 -11.276 5.408 16.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.716 3.284 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.593 4.593 8 H 0.074 0.926 9 C 0.062 3.938 10 N -0.264 5.264 11 C -0.082 4.082 12 C -0.009 4.009 13 N -0.332 5.332 14 C 0.275 3.725 15 O -0.412 6.412 16 C 0.081 3.919 17 O -0.331 6.331 18 C -0.159 4.159 19 C -0.222 4.222 20 S -0.038 6.038 21 C -0.258 4.258 22 C -0.039 4.039 23 C -0.077 4.077 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.233 0.767 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.133 0.867 38 H 0.095 0.905 39 H 0.107 0.893 40 H 0.065 0.935 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.787 -11.563 6.358 17.044 hybrid contribution 0.344 1.733 -1.581 2.371 sum 11.131 -9.830 4.777 15.600 Atomic orbital electron populations 1.69933 1.06010 1.27017 1.49642 1.24946 0.94756 0.99164 0.94702 0.86657 0.79875 0.83614 0.78263 1.20594 1.21007 1.19962 1.21702 0.93213 0.92045 1.52369 0.92575 1.19783 0.90689 0.85281 0.98018 1.62500 1.16715 1.44979 1.02169 1.22279 0.96428 0.95260 0.94198 1.21892 0.92788 0.99061 0.87127 1.48220 1.06377 1.67882 1.10693 1.21274 0.82660 0.77388 0.91227 1.90709 1.70580 1.49920 1.29993 1.21670 0.84060 0.94541 0.91655 1.86642 1.23557 1.42415 1.80453 1.21982 1.05299 0.93094 0.95520 1.24422 1.05527 0.95729 0.96534 1.88019 1.94315 1.05334 1.16178 1.25321 1.05786 1.01635 0.93074 1.22761 0.96851 0.99325 0.84939 1.22318 0.95077 0.93927 0.96412 0.92663 0.95395 0.94358 0.94153 0.90206 0.89405 0.90962 0.76735 0.87852 0.88926 0.87558 0.86527 0.86934 0.86686 0.90480 0.89281 0.93452 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.60 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.55 -14.30 7.82 -34.44 -0.27 -14.57 16 8 H 0.06 1.44 5.91 -52.49 -0.31 1.13 16 9 C 0.19 4.47 5.20 -4.97 -0.03 4.45 16 10 N -0.54 -10.37 4.83 -235.46 -1.14 -11.50 16 11 C 0.05 0.85 5.36 -3.70 -0.02 0.83 16 12 C 0.11 1.69 6.61 -3.60 -0.02 1.66 16 13 N -0.60 -8.45 2.92 -172.18 -0.50 -8.95 16 14 C 0.49 7.04 6.04 -10.99 -0.07 6.98 16 15 O -0.53 -9.34 15.77 -14.55 -0.23 -9.57 16 16 C 0.13 1.50 0.90 -91.45 -0.08 1.42 16 17 O -0.53 -6.31 12.29 -55.33 -0.68 -6.99 16 18 C -0.12 -1.37 4.96 -26.41 -0.13 -1.50 16 19 C -0.07 -0.74 6.59 37.82 0.25 -0.49 16 20 S -0.27 -2.88 23.09 -107.50 -2.48 -5.36 16 21 C -0.11 -1.10 5.80 37.82 0.22 -0.88 16 22 C 0.08 1.09 4.32 -3.37 -0.01 1.08 16 23 C 0.05 0.88 5.00 -3.46 -0.02 0.86 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.03 0.71 7.90 -51.93 -0.41 0.30 16 26 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.04 0.81 7.48 -51.93 -0.39 0.42 16 28 H 0.08 1.39 7.95 -51.93 -0.41 0.98 16 29 H 0.09 1.33 7.04 -51.93 -0.37 0.97 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.38 3.55 8.76 45.56 0.40 3.95 16 32 H 0.10 1.17 7.83 -51.93 -0.41 0.76 16 33 H 0.09 1.17 7.30 -51.93 -0.38 0.79 16 34 H 0.11 1.03 6.65 -51.93 -0.35 0.69 16 35 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.11 1.12 4.97 -51.93 -0.26 0.86 16 37 H 0.11 0.99 8.03 -51.93 -0.42 0.57 16 38 H 0.08 0.94 7.73 -51.93 -0.40 0.54 16 39 H 0.09 1.01 1.30 -51.93 -0.07 0.95 16 40 H 0.05 0.89 6.38 -51.93 -0.33 0.56 16 41 H 0.08 1.40 8.11 -51.93 -0.42 0.98 16 LS Contribution 323.19 15.07 4.87 4.87 Total: -1.00 -30.28 323.19 -9.64 -39.93 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.92 Total: 4.72 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -0.28 Total: 1.55 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: -0.90 Total: -44.74 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.91 Total: -16.56 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: -2.88 SS G_CDS: -2.48 Total: -5.36 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.28 -9.64 -39.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204349.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.637 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds