Wall clock time and date at job start Tue Mar 31 2020 03:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.50707 * 109.47168 * 165.00185 * 18 17 14 20 20 N 1.31795 * 119.11892 * 269.72420 * 19 18 17 21 21 C 1.32333 * 120.81818 * 179.75859 * 20 19 18 22 22 C 1.38591 * 119.10242 * 0.51142 * 21 20 19 23 23 C 1.38602 * 118.40180 * 359.74182 * 22 21 20 24 24 N 1.31791 * 119.12441 * 89.99857 * 19 18 17 25 25 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 30 30 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 31 31 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 32 32 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 33 33 H 1.09001 * 109.46915 * 284.99450 * 18 17 14 34 34 H 1.08992 * 109.47300 * 44.99797 * 18 17 14 35 35 H 1.08005 * 120.44664 * 180.23436 * 21 20 19 36 36 H 1.08002 * 120.79951 * 179.77025 * 22 21 20 37 37 H 1.07992 * 120.44797 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 6.6349 -1.3327 -1.7352 20 7 7.3507 -1.2363 -2.8376 21 6 8.6688 -1.1323 -2.7830 22 6 9.2947 -1.1363 -1.5465 23 6 8.5087 -1.2444 -0.4101 24 7 7.1955 -1.3398 -0.5425 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7089 1.1611 3.4845 29 1 0.7376 -2.1442 -1.9996 30 1 2.4629 -2.5817 -1.9866 31 1 1.5295 -2.5968 -0.4711 32 1 5.0733 0.6551 -1.5281 33 1 4.7540 -2.0247 -1.0019 34 1 4.8736 -1.9405 -2.7759 35 1 9.2493 -1.0499 -3.6901 36 1 10.3691 -1.0566 -1.4703 37 1 8.9618 -1.2504 0.5702 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851815908.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:59 Heat of formation + Delta-G solvation = -19.376678 kcal Electronic energy + Delta-G solvation = -22856.886439 eV Core-core repulsion = 19375.764756 eV Total energy + Delta-G solvation = -3481.121683 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.18845 -36.69012 -36.13277 -35.36258 -35.23538 -33.88716 -32.56733 -31.90927 -29.05539 -26.84521 -25.46790 -25.14191 -24.73352 -22.75802 -20.76498 -18.94354 -17.73428 -17.66667 -17.06869 -16.60607 -16.35059 -15.95888 -15.35537 -15.07953 -14.64834 -14.23204 -13.89572 -13.47808 -13.32883 -13.21535 -12.98966 -12.67393 -11.97627 -11.77399 -11.67496 -11.50537 -11.34077 -11.18501 -11.01777 -10.98357 -10.91501 -10.83161 -10.41269 -10.18947 -10.04668 -9.83858 -9.41193 -9.37614 -9.15034 -8.44311 -7.95030 -6.05792 -4.13874 0.57764 0.90843 1.29455 3.29338 3.33423 3.34364 3.38671 3.66288 3.76014 3.97026 4.17961 4.37592 4.39323 4.74627 4.86587 4.99409 5.04440 5.25014 5.36738 5.49925 5.63370 5.74570 5.95596 6.16488 6.19603 6.36244 6.69081 6.80210 6.90125 6.90547 7.12740 7.18678 7.53311 7.65887 7.81525 7.92385 8.08062 8.29058 8.88671 9.52227 10.99256 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.005830 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.438412 B = 4801.420673 C = 6279.822000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.268 3.732 3 H 0.059 0.941 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.276 1.276 12 N -0.988 5.988 13 C 0.104 3.896 14 S 2.786 3.214 15 O -0.994 6.994 16 O -0.978 6.978 17 N -1.120 6.120 18 C 0.193 3.807 19 C 0.315 3.685 20 N -0.505 5.505 21 C 0.145 3.855 22 C -0.230 4.230 23 C 0.148 3.852 24 N -0.498 5.498 25 H 0.012 0.988 26 H 0.032 0.968 27 H 0.092 0.908 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.413 0.587 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.169 0.831 36 H 0.148 0.852 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.022 -5.541 -6.929 16.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.165 3.835 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.202 1.202 12 N -0.832 5.832 13 C -0.042 4.042 14 S 2.794 3.206 15 O -0.977 6.977 16 O -0.962 6.962 17 N -0.878 5.878 18 C 0.065 3.935 19 C 0.046 3.954 20 N -0.219 5.219 21 C -0.022 4.022 22 C -0.252 4.252 23 C -0.018 4.018 24 N -0.212 5.212 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.245 0.755 33 H 0.113 0.887 34 H 0.118 0.882 35 H 0.186 0.814 36 H 0.166 0.834 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 12.519 -5.175 -7.694 15.579 hybrid contribution 1.860 -0.263 1.559 2.441 sum 14.379 -5.439 -6.134 16.552 Atomic orbital electron populations 1.22051 0.97921 0.99668 1.00743 1.18738 0.91880 0.92764 0.80139 0.92359 1.21335 1.31757 1.13125 0.90110 0.91860 1.24916 0.94953 0.94973 0.98978 1.69876 1.36279 1.22619 1.23844 0.86588 0.79250 0.79612 0.82096 1.21374 1.20310 1.20185 1.57717 1.64134 1.21456 1.39846 1.21233 0.99078 0.81990 1.01931 1.01774 0.72285 0.73233 0.73317 1.93548 1.85814 1.76338 1.42045 1.93600 1.83348 1.32371 1.86870 1.56006 1.32403 1.13859 1.85573 1.19846 0.84243 0.85402 1.04001 1.23157 0.97504 0.91107 0.83617 1.68321 1.07710 1.12804 1.33093 1.23290 0.90440 0.90328 0.98096 1.22965 1.03037 1.04077 0.95124 1.23343 0.89020 0.89859 0.99627 1.68364 1.12764 1.12557 1.27466 0.96895 0.94846 0.88927 0.92653 0.93722 0.93242 0.90060 0.75456 0.88662 0.88216 0.81378 0.83431 0.81279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.97 37.16 0.33 -3.11 16 2 C 0.27 6.54 2.62 -69.09 -0.18 6.36 16 3 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 4 C -0.52 -13.40 7.99 -34.44 -0.28 -13.67 16 5 H 0.06 1.57 7.33 -52.49 -0.38 1.18 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -24.49 11.32 55.43 0.63 -23.87 16 8 Si 0.90 20.54 29.54 -169.99 -5.02 15.52 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.99 -20.39 3.12 -115.85 -0.36 -20.75 16 13 C 0.10 1.82 9.28 59.85 0.56 2.38 16 14 S 2.79 55.25 6.09 -107.50 -0.66 54.59 16 15 O -0.99 -20.42 16.68 -57.17 -0.95 -21.37 16 16 O -0.98 -22.58 16.70 -57.17 -0.95 -23.54 16 17 N -1.12 -18.91 6.05 -11.65 -0.07 -18.98 16 18 C 0.19 2.91 6.68 -5.19 -0.03 2.88 16 19 C 0.32 4.53 7.04 -157.19 -1.11 3.43 16 20 N -0.50 -6.69 10.33 -10.72 -0.11 -6.80 16 21 C 0.14 1.36 11.30 -17.21 -0.19 1.17 16 22 C -0.23 -1.82 10.17 -39.32 -0.40 -2.22 16 23 C 0.15 1.49 11.31 -17.20 -0.19 1.30 16 24 N -0.50 -6.96 10.33 -10.72 -0.11 -7.07 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.03 0.74 7.67 -51.93 -0.40 0.34 16 27 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.73 7.79 -51.92 -0.40 0.33 16 31 H 0.08 1.44 7.02 -51.93 -0.36 1.07 16 32 H 0.41 6.67 8.64 -34.47 -0.30 6.37 16 33 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.10 1.41 7.75 -51.93 -0.40 1.01 16 35 H 0.17 0.99 8.06 -52.48 -0.42 0.56 16 36 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 37 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -33.43 328.26 -8.85 -42.28 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.60 Total: 4.93 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -1.59 Total: 0.11 kcal Atomic # 7 Polarization: -77.45 SS G_CDS: -0.03 Total: -77.47 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -1.91 Total: -44.91 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 55.25 SS G_CDS: -0.66 Total: 54.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.43 -8.85 -42.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851815908.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.908 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds