Wall clock time and date at job start Tue Mar 31 2020 03:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46494 * 109.47535 * 2 1 4 4 C 1.46504 * 119.99742 * 275.00265 * 3 2 1 5 5 C 1.50704 * 109.46887 * 274.99499 * 4 3 2 6 6 H 1.07997 * 119.99814 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99679 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00172 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99670 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47332 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47297 * 119.99905 * 9 7 5 12 12 H 1.48506 * 109.47188 * 240.00204 * 9 7 5 13 13 S 1.65599 * 120.00381 * 94.99900 * 3 2 1 14 14 O 1.42104 * 106.39905 * 336.46012 * 13 3 2 15 15 O 1.42095 * 106.40452 * 203.54281 * 13 3 2 16 16 N 1.65602 * 107.21657 * 89.99744 * 13 3 2 17 17 C 1.46498 * 119.99612 * 65.28266 * 16 13 3 18 18 C 1.50703 * 109.47212 * 164.72359 * 17 16 13 19 19 N 1.31803 * 119.11822 * 269.72742 * 18 17 16 20 20 C 1.32331 * 120.81405 * 179.75927 * 19 18 17 21 21 C 1.38599 * 119.10661 * 0.50244 * 20 19 18 22 22 C 1.38602 * 118.39983 * 359.75330 * 21 20 19 23 23 N 1.31791 * 119.12690 * 89.99409 * 18 17 16 24 24 H 1.09007 * 109.47291 * 300.00196 * 1 2 3 25 25 H 1.09000 * 109.47103 * 59.99917 * 1 2 3 26 26 H 1.08994 * 109.47573 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46845 * 239.99673 * 2 1 3 28 28 H 1.09000 * 109.47103 * 120.00082 * 2 1 3 29 29 H 1.08994 * 109.47518 * 34.99789 * 4 3 2 30 30 H 1.09000 * 109.47078 * 155.00216 * 4 3 2 31 31 H 0.96999 * 119.99728 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99942 * 244.99790 * 16 13 3 33 33 H 1.08996 * 109.46882 * 284.72133 * 17 16 13 34 34 H 1.08999 * 109.47498 * 44.72066 * 17 16 13 35 35 H 1.07999 * 120.45231 * 180.23634 * 20 19 18 36 36 H 1.08000 * 120.80602 * 179.77436 * 21 20 19 37 37 H 1.07999 * 120.45118 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1583 2.1086 -1.2640 5 6 3.4948 1.7886 -1.8824 6 1 4.1720 1.1109 -1.3839 7 6 3.8530 2.3612 -3.0844 8 7 3.0285 3.1868 -3.6911 9 14 5.5093 1.9641 -3.8513 10 1 6.2448 1.0152 -2.9772 11 1 5.3018 1.3473 -5.1861 12 1 6.2981 3.2135 -4.0004 13 16 2.4123 2.1202 1.4286 14 8 1.6868 1.4415 2.4448 15 8 2.3058 3.5185 1.1997 16 7 4.0145 1.8135 1.7137 17 6 5.0355 2.3572 0.8148 18 6 6.3869 2.2654 1.4754 19 7 6.8113 3.2737 2.2105 20 6 7.9902 3.2268 2.8097 21 6 8.7849 2.1030 2.6470 22 6 8.3066 1.0653 1.8624 23 7 7.1151 1.1813 1.2985 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3618 1.8097 -1.9453 30 1 2.0923 3.1802 -1.0757 31 1 3.2803 3.5893 -4.5369 32 1 4.2771 1.2773 2.4782 33 1 5.0449 1.7849 -0.1128 34 1 4.8084 3.4005 0.5956 35 1 8.3305 4.0548 3.4138 36 1 9.7533 2.0371 3.1205 37 1 8.8981 0.1741 1.7137 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851817416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:10 Heat of formation + Delta-G solvation = -49.768965 kcal Electronic energy + Delta-G solvation = -23064.605719 eV Core-core repulsion = 19582.166128 eV Total energy + Delta-G solvation = -3482.439591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.00738 -38.35513 -37.69486 -36.91345 -36.54531 -34.72459 -34.66535 -32.80522 -31.50925 -28.55590 -27.82531 -25.48335 -24.92356 -23.69238 -23.25598 -20.48137 -19.00952 -18.77580 -18.47254 -18.38383 -17.82481 -17.17271 -16.75273 -16.25304 -16.01524 -15.63294 -15.27180 -14.83543 -14.70855 -14.61237 -14.29027 -14.05093 -13.77779 -13.60967 -13.29907 -13.18227 -13.13173 -13.04257 -12.75252 -12.65463 -12.24557 -12.09015 -11.90860 -11.80126 -11.70340 -11.52526 -10.58713 -10.55387 -10.51579 -10.22852 -9.77904 -8.14888 -6.26983 -0.45072 -0.04717 0.17541 1.41107 1.44557 1.55188 1.96198 2.42951 2.54581 2.78931 2.84914 3.17370 3.24123 3.47718 3.76337 3.96095 4.02799 4.21356 4.29543 4.43945 4.49093 4.50213 4.63426 4.75492 4.84726 4.91813 5.02550 5.18558 5.32184 5.42886 5.45111 5.57296 5.80291 5.85518 6.05479 6.09577 6.13727 6.85373 7.09771 7.42356 8.93530 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.007370 C = 0.005087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.055114 B = 3798.069080 C = 5502.771066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.121 3.879 3 N -0.993 5.993 4 C 0.257 3.743 5 C -0.539 4.539 6 H 0.080 0.920 7 C 0.018 3.982 8 N -0.925 5.925 9 Si 0.946 3.054 10 H -0.257 1.257 11 H -0.279 1.279 12 H -0.286 1.286 13 S 2.804 3.196 14 O -1.000 7.000 15 O -1.012 7.012 16 N -1.107 6.107 17 C 0.187 3.813 18 C 0.295 3.705 19 N -0.536 5.536 20 C 0.131 3.869 21 C -0.203 4.203 22 C 0.132 3.868 23 N -0.529 5.529 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.091 0.909 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.026 0.974 30 H 0.020 0.980 31 H 0.265 0.735 32 H 0.418 0.582 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.203 0.797 36 H 0.195 0.805 37 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.188 -6.643 12.034 17.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.005 4.005 3 N -0.834 5.834 4 C 0.133 3.867 5 C -0.578 4.578 6 H 0.097 0.903 7 C -0.182 4.182 8 N -0.565 5.565 9 Si 0.771 3.229 10 H -0.181 1.181 11 H -0.205 1.205 12 H -0.212 1.212 13 S 2.812 3.188 14 O -0.984 6.984 15 O -0.996 6.996 16 N -0.868 5.868 17 C 0.059 3.941 18 C 0.025 3.975 19 N -0.251 5.251 20 C -0.034 4.034 21 C -0.225 4.225 22 C -0.033 4.033 23 N -0.244 5.244 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.110 0.890 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.074 0.926 32 H 0.252 0.748 33 H 0.122 0.878 34 H 0.097 0.903 35 H 0.219 0.781 36 H 0.213 0.787 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 9.624 -5.845 11.820 16.325 hybrid contribution 1.677 -0.192 -0.366 1.727 sum 11.300 -6.037 11.454 17.186 Atomic orbital electron populations 1.22193 0.95792 1.03270 1.01398 1.21274 0.94691 0.81099 1.03395 1.57616 1.78974 1.24209 1.22649 1.18799 0.96741 0.90943 0.80177 1.21930 1.02553 1.27445 1.05873 0.90257 1.25685 1.00218 0.94759 0.97574 1.70060 1.37783 1.31067 1.17566 0.85680 0.80299 0.78120 0.78767 1.18095 1.20517 1.21237 1.01056 0.72636 0.72775 0.72347 1.93535 1.70679 1.76138 1.58073 1.93535 1.86402 1.33516 1.86152 1.55551 1.24087 1.68330 1.38858 1.20048 0.81233 1.00491 0.92283 1.22805 0.96124 0.86054 0.92482 1.68288 1.17852 1.29741 1.09241 1.24014 0.87745 0.98655 0.92989 1.23417 1.03994 0.94665 1.00404 1.24029 0.90234 0.99818 0.89194 1.68259 1.08287 1.25194 1.22630 0.93477 0.93206 0.89033 0.89838 0.89746 0.95624 0.96213 0.92629 0.74816 0.87825 0.90318 0.78075 0.78733 0.77925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.16 10.24 71.98 0.74 -4.42 16 2 C 0.12 4.09 6.06 86.38 0.52 4.61 16 3 N -0.99 -41.13 2.82 -519.86 -1.47 -42.60 16 4 C 0.26 12.86 5.43 85.63 0.47 13.33 16 5 C -0.54 -27.55 8.06 25.60 0.21 -27.34 16 6 H 0.08 3.84 5.82 -2.91 -0.02 3.83 16 7 C 0.02 0.94 5.46 84.66 0.46 1.40 16 8 N -0.93 -53.24 13.29 21.45 0.28 -52.95 16 9 Si 0.95 42.09 29.54 68.60 2.03 44.11 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 12 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 13 S 2.80 114.90 6.10 -56.49 -0.34 114.56 16 14 O -1.00 -40.76 17.11 -128.00 -2.19 -42.95 16 15 O -1.01 -49.56 16.15 -128.00 -2.07 -51.63 16 16 N -1.11 -39.38 6.05 -190.79 -1.15 -40.54 16 17 C 0.19 7.18 6.33 85.63 0.54 7.73 16 18 C 0.29 9.79 7.04 138.75 0.98 10.77 16 19 N -0.54 -16.23 10.34 -187.84 -1.94 -18.17 16 20 C 0.13 2.53 11.30 84.70 0.96 3.49 16 21 C -0.20 -2.84 10.17 22.44 0.23 -2.61 16 22 C 0.13 2.49 11.31 84.70 0.96 3.45 16 23 N -0.53 -15.51 10.33 -187.84 -1.94 -17.45 16 24 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.08 2.79 8.11 -2.39 -0.02 2.77 16 28 H 0.08 2.50 7.61 -2.39 -0.02 2.48 16 29 H 0.03 1.34 8.11 -2.39 -0.02 1.33 16 30 H 0.02 1.12 6.91 -2.39 -0.02 1.10 16 31 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.42 12.68 8.64 -96.74 -0.84 11.84 16 33 H 0.10 4.29 4.86 -2.39 -0.01 4.28 16 34 H 0.08 3.36 7.74 -2.39 -0.02 3.34 16 35 H 0.20 2.26 8.06 -2.91 -0.02 2.23 16 36 H 0.20 0.80 8.06 -2.91 -0.02 0.77 16 37 H 0.20 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -73.49 329.17 -2.47 -75.96 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.26 Total: 21.26 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: 6.06 Total: 10.40 kcal Atomic # 7 Polarization: -165.49 SS G_CDS: -6.22 Total: -171.71 kcal Atomic # 8 Polarization: -90.33 SS G_CDS: -4.26 Total: -94.58 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 114.90 SS G_CDS: -0.34 Total: 114.56 kcal Total: -73.49 -2.47 -75.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851817416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.194 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds