Wall clock time and date at job start Tue Mar 31 2020 03:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34766 * 124.17994 * 2 1 4 4 O 1.21243 * 127.15639 * 359.97438 * 3 2 1 5 5 C 1.51581 * 105.69005 * 179.97438 * 3 2 1 6 6 N 1.47317 * 103.58722 * 0.31936 * 5 3 2 7 7 C 1.46503 * 126.68513 * 179.84385 * 6 5 3 8 8 C 1.50707 * 109.46690 * 269.98018 * 7 6 5 9 9 O 1.20822 * 120.00022 * 359.97438 * 8 7 6 10 10 O 1.34228 * 119.99819 * 180.02562 * 8 7 6 11 11 C 1.45204 * 117.00200 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47060 * 179.97438 * 11 10 8 13 13 O 1.42901 * 109.47120 * 65.00287 * 12 11 10 14 14 C 1.42896 * 113.99802 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46991 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00256 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00095 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00071 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00177 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46892 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.47673 * 119.99967 * 19 17 15 22 22 H 1.48499 * 109.47281 * 240.00099 * 19 17 15 23 23 C 1.33791 * 124.17835 * 180.29168 * 2 1 3 24 24 O 1.21540 * 123.76923 * 359.97080 * 23 2 1 25 25 H 1.09002 * 109.47391 * 269.70277 * 1 2 3 26 26 H 1.09001 * 109.46813 * 149.70333 * 1 2 3 27 27 H 1.09004 * 109.47041 * 29.70461 * 1 2 3 28 28 H 1.09003 * 110.76533 * 241.71585 * 5 3 2 29 29 H 1.08994 * 110.43576 * 118.76694 * 5 3 2 30 30 H 1.08990 * 109.47656 * 29.97642 * 7 6 5 31 31 H 1.08996 * 109.47168 * 149.98340 * 7 6 5 32 32 H 1.08996 * 109.47085 * 300.00303 * 11 10 8 33 33 H 1.08997 * 109.46588 * 59.99510 * 11 10 8 34 34 H 1.08998 * 109.46742 * 185.00122 * 12 11 10 35 35 H 1.08998 * 109.47235 * 305.00031 * 12 11 10 36 36 H 1.08994 * 109.47406 * 300.00101 * 14 13 12 37 37 H 1.09000 * 109.46809 * 60.00326 * 14 13 12 38 38 H 0.96995 * 120.00139 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2221 1.1149 0.0000 4 8 1.8341 2.2636 -0.0004 5 6 3.6597 0.6342 0.0007 6 7 3.5338 -0.8336 -0.0070 7 6 4.6295 -1.8060 -0.0128 8 6 5.0040 -2.1323 -1.4356 9 8 4.4157 -1.6068 -2.3508 10 8 5.9905 -3.0073 -1.6861 11 6 6.2970 -3.2740 -3.0802 12 6 7.4397 -4.2877 -3.1663 13 8 7.0080 -5.5391 -2.6281 14 6 8.0059 -6.5614 -2.6614 15 6 7.4452 -7.8300 -2.0720 16 1 6.4285 -7.8534 -1.7087 17 6 8.2304 -8.9609 -1.9966 18 7 9.4687 -8.9323 -2.4385 19 14 7.5353 -10.5336 -1.2667 20 1 6.1294 -10.3050 -0.8465 21 1 7.5775 -11.6131 -2.2855 22 1 8.3459 -10.9330 -0.0884 23 6 2.2166 -1.1068 -0.0056 24 8 1.7603 -2.2333 -0.0109 25 1 -0.3634 -0.0053 1.0276 26 1 -0.3633 -0.8873 -0.5184 27 1 -0.3633 0.8927 -0.5093 28 1 4.1790 0.9699 0.8983 29 1 4.1768 0.9794 -0.8945 30 1 5.4924 -1.3842 0.5024 31 1 4.3110 -2.7154 0.4967 32 1 5.4141 -3.6783 -3.5754 33 1 6.5959 -2.3474 -3.5701 34 1 7.7293 -4.4210 -4.2086 35 1 8.2935 -3.9220 -2.5959 36 1 8.3069 -6.7418 -3.6933 37 1 8.8716 -6.2430 -2.0807 38 1 10.0212 -9.7278 -2.3851 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860307310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:08 Heat of formation + Delta-G solvation = -187.333288 kcal Electronic energy + Delta-G solvation = -23799.034530 eV Core-core repulsion = 19835.584080 eV Total energy + Delta-G solvation = -3963.450450 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.125 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.44496 -41.48986 -39.79925 -38.77512 -37.66800 -37.24543 -36.27071 -34.94268 -32.18720 -31.18207 -29.06377 -28.22164 -27.79426 -24.61442 -24.19631 -23.44676 -22.39081 -21.26245 -19.19312 -18.77236 -18.57447 -18.25091 -18.03881 -17.77117 -17.27283 -17.17066 -16.64795 -16.36474 -16.28135 -15.86050 -15.40971 -15.24180 -15.11433 -14.77386 -14.51475 -14.13136 -13.75765 -13.69012 -13.56738 -13.26734 -13.18944 -12.88391 -12.72154 -12.44957 -12.16616 -12.03873 -11.79632 -11.74584 -11.43973 -11.25925 -10.98127 -10.89786 -10.30529 -10.22998 -8.32294 -6.43913 0.47868 0.79663 1.08189 1.41225 1.41848 1.53036 1.56868 1.83362 2.06418 2.35060 2.96274 3.01820 3.07422 3.55962 3.61226 3.93003 4.10170 4.13102 4.21656 4.32105 4.34581 4.38604 4.41696 4.44185 4.51496 4.65466 4.68484 4.75355 4.86765 5.10337 5.19022 5.38921 5.55274 5.91342 5.95940 6.23339 6.50542 6.61874 6.80911 6.85004 7.27839 8.79992 Molecular weight = 300.12amu Principal moments of inertia in cm(-1) A = 0.025235 B = 0.002569 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.306678 B =10894.874272 C =11629.827415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.582 5.582 3 C 0.527 3.473 4 O -0.496 6.496 5 C 0.070 3.930 6 N -0.610 5.610 7 C 0.165 3.835 8 C 0.438 3.562 9 O -0.537 6.537 10 O -0.352 6.352 11 C 0.080 3.920 12 C 0.053 3.947 13 O -0.410 6.410 14 C 0.208 3.792 15 C -0.549 4.549 16 H 0.058 0.942 17 C 0.008 3.992 18 N -0.928 5.928 19 Si 0.981 3.019 20 H -0.267 1.267 21 H -0.272 1.272 22 H -0.269 1.269 23 C 0.698 3.302 24 O -0.578 6.578 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.175 0.825 29 H 0.139 0.861 30 H 0.190 0.810 31 H 0.137 0.863 32 H 0.062 0.938 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.063 0.937 36 H -0.009 1.009 37 H -0.007 1.007 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.109 22.469 7.114 25.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.328 5.328 3 C 0.316 3.684 4 O -0.368 6.368 5 C -0.054 4.054 6 N -0.348 5.348 7 C 0.042 3.958 8 C 0.281 3.719 9 O -0.427 6.427 10 O -0.267 6.267 11 C 0.007 3.993 12 C -0.024 4.024 13 O -0.331 6.331 14 C 0.133 3.867 15 C -0.587 4.587 16 H 0.077 0.923 17 C -0.190 4.190 18 N -0.568 5.568 19 Si 0.804 3.196 20 H -0.191 1.191 21 H -0.197 1.197 22 H -0.194 1.194 23 C 0.400 3.600 24 O -0.454 6.454 25 H 0.107 0.893 26 H 0.101 0.899 27 H 0.117 0.883 28 H 0.192 0.808 29 H 0.157 0.843 30 H 0.207 0.793 31 H 0.155 0.845 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.097 0.903 35 H 0.081 0.919 36 H 0.009 0.991 37 H 0.011 0.989 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.730 22.418 6.858 25.783 hybrid contribution -0.051 -0.919 -0.509 1.052 sum -10.781 21.499 6.350 24.875 Atomic orbital electron populations 1.22019 0.74006 1.05020 1.04842 1.46387 1.10531 1.07847 1.68001 1.21223 0.89811 0.84041 0.73301 1.90823 1.79783 1.18588 1.47599 1.22877 0.94459 0.78223 1.09793 1.47209 1.03984 1.07879 1.75701 1.21069 0.90964 0.95058 0.88674 1.25074 0.76653 0.75535 0.94631 1.90653 1.52175 1.51704 1.48206 1.86577 1.50949 1.57756 1.31445 1.23162 0.98256 0.98802 0.79095 1.22661 0.96153 0.84284 0.99286 1.87869 1.41065 1.20633 1.83504 1.19867 0.86861 0.85490 0.94455 1.21414 0.99869 0.95831 1.41549 0.92345 1.25907 0.95011 1.02648 0.95480 1.70056 1.08524 1.31035 1.47163 0.85171 0.78640 0.77536 0.78285 1.19127 1.19733 1.19435 1.16050 0.82679 0.84035 0.77215 1.90999 1.75979 1.22082 1.56306 0.89264 0.89858 0.88270 0.80772 0.84299 0.79268 0.84526 0.91921 0.86990 0.90316 0.91899 0.99122 0.98884 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.16 10.73 127.77 1.37 2.53 16 2 N -0.58 -10.66 3.00 -796.64 -2.39 -13.06 16 3 C 0.53 8.24 8.31 87.94 0.73 8.97 16 4 O -0.50 -10.13 17.75 -2.92 -0.05 -10.18 16 5 C 0.07 0.61 7.66 85.76 0.66 1.27 16 6 N -0.61 -9.66 2.51 -846.24 -2.12 -11.78 16 7 C 0.16 2.38 6.74 85.63 0.58 2.95 16 8 C 0.44 10.67 8.03 71.24 0.57 11.24 16 9 O -0.54 -16.02 16.18 21.98 0.36 -15.66 16 10 O -0.35 -10.12 10.19 -48.75 -0.50 -10.62 16 11 C 0.08 2.33 5.85 71.98 0.42 2.75 16 12 C 0.05 1.82 6.33 71.98 0.46 2.28 16 13 O -0.41 -19.75 10.30 -145.57 -1.50 -21.25 16 14 C 0.21 11.46 5.69 71.24 0.41 11.86 16 15 C -0.55 -32.62 9.43 25.60 0.24 -32.38 16 16 H 0.06 3.49 7.81 -2.91 -0.02 3.46 16 17 C 0.01 0.47 5.46 84.65 0.46 0.93 16 18 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 19 Si 0.98 44.25 29.54 68.60 2.03 46.28 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 23 C 0.70 15.84 8.31 179.44 1.49 17.34 16 24 O -0.58 -18.15 17.15 -3.84 -0.07 -18.21 16 25 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.08 1.31 7.86 -2.39 -0.02 1.29 16 27 H 0.10 1.17 8.00 -2.38 -0.02 1.15 16 28 H 0.18 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.14 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.19 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.14 2.13 8.03 -2.39 -0.02 2.11 16 32 H 0.06 2.00 8.13 -2.39 -0.02 1.98 16 33 H 0.11 2.49 8.13 -2.39 -0.02 2.47 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 36 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -84.38 345.18 4.50 -79.88 By element: Atomic # 1 Polarization: -1.53 SS G_CDS: 1.08 Total: -0.45 kcal Atomic # 6 Polarization: 22.36 SS G_CDS: 7.38 Total: 29.75 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -4.23 Total: -79.54 kcal Atomic # 8 Polarization: -74.16 SS G_CDS: -1.76 Total: -75.92 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 2.03 Total: 46.28 kcal Total: -84.38 4.50 -79.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860307310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.449 kcal (2) G-P(sol) polarization free energy of solvation -84.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds