Wall clock time and date at job start Tue Mar 31 2020 03:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99871 * 2 1 4 4 H 1.48507 * 109.47122 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47194 * 299.99961 * 3 2 1 6 6 H 1.48502 * 109.47395 * 60.00379 * 3 2 1 7 7 C 1.38812 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00070 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99855 * 359.97438 * 7 2 1 10 10 C 1.47584 * 134.49372 * 180.02562 * 9 7 2 11 11 C 1.53939 * 86.11592 * 155.36365 * 10 9 7 12 12 C 1.53007 * 113.74046 * 137.95206 * 11 10 9 13 13 N 1.46498 * 109.47127 * 176.92145 * 12 11 10 14 14 C 1.34780 * 119.99968 * 179.97438 * 13 12 11 15 15 O 1.21565 * 119.99720 * 0.02562 * 14 13 12 16 16 C 1.47712 * 119.99929 * 180.02562 * 14 13 12 17 17 C 1.41500 * 126.51523 * 180.02562 * 16 14 13 18 18 C 1.35370 * 105.49919 * 179.97438 * 17 16 14 19 19 C 1.50703 * 126.38317 * 180.02562 * 18 17 16 20 20 F 1.39904 * 109.46969 * 59.99948 * 19 18 17 21 21 F 1.39901 * 109.47086 * 300.00351 * 19 18 17 22 22 N 1.35027 * 107.22918 * 0.26270 * 18 17 16 23 23 H 0.97001 * 124.88347 * 179.71648 * 22 18 17 24 24 N 1.28471 * 110.23255 * 359.54700 * 22 18 17 25 25 C 1.47814 * 134.45781 * 359.87931 * 9 7 2 26 26 H 0.96997 * 120.00049 * 359.97438 * 1 2 3 27 27 H 1.09006 * 113.76779 * 41.05928 * 10 9 7 28 28 H 1.09000 * 113.76591 * 269.66566 * 10 9 7 29 29 H 1.09000 * 113.74326 * 269.15429 * 11 10 9 30 30 H 1.09001 * 109.46597 * 56.92768 * 12 11 10 31 31 H 1.08997 * 109.47135 * 296.92896 * 12 11 10 32 32 H 0.96998 * 120.00272 * 0.02562 * 13 12 11 33 33 H 1.07993 * 127.25340 * 0.02562 * 17 16 14 34 34 H 1.09002 * 109.47152 * 180.02562 * 19 18 17 35 35 H 1.08996 * 113.77202 * 90.36872 * 25 9 7 36 36 H 1.09006 * 113.83162 * 318.90834 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.7202 -3.8102 -0.0005 11 6 0.3471 -4.0829 0.6397 12 6 -0.3634 -5.3137 0.0726 13 7 -1.6200 -5.5280 0.7945 14 6 -2.4192 -6.5617 0.4641 15 8 -2.0971 -7.3165 -0.4328 16 6 -3.6865 -6.7774 1.1916 17 6 -4.6240 -7.8120 0.9613 18 6 -5.6160 -7.6077 1.8594 19 6 -6.8585 -8.4444 2.0247 20 9 -6.4971 -9.7588 2.3395 21 9 -7.5894 -8.4347 0.8319 22 7 -5.2873 -6.5115 2.5760 23 1 -5.8247 -6.1335 3.2896 24 7 -4.1587 -6.0432 2.1792 25 6 -0.1057 -2.7571 0.0022 26 1 -0.4850 0.8400 0.0004 27 1 2.5625 -4.0324 0.6547 28 1 1.8320 -4.2350 -0.9981 29 1 0.3594 -4.0639 1.7295 30 1 0.2764 -6.1884 0.1893 31 1 -0.5743 -5.1562 -0.9851 32 1 -1.8772 -4.9255 1.5099 33 1 -4.5610 -8.5992 0.2247 34 1 -7.4695 -8.0329 2.8282 35 1 -0.5318 -2.8718 -0.9945 36 1 -0.7184 -2.1403 0.6597 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031968158.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:01 Heat of formation + Delta-G solvation = -30.946989 kcal Electronic energy + Delta-G solvation = -23131.481199 eV Core-core repulsion = 19096.017403 eV Total energy + Delta-G solvation = -4035.463796 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.114 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -50.05191 -48.07358 -43.91443 -40.68582 -39.54814 -35.81698 -34.22189 -33.33767 -32.91210 -30.59423 -27.95037 -27.16801 -26.54021 -25.19670 -23.47411 -22.54508 -21.51371 -20.54780 -19.83557 -18.75051 -18.37687 -18.24932 -18.17866 -17.23599 -17.03946 -16.85091 -16.36837 -16.05631 -15.69289 -15.46791 -14.93752 -14.91436 -14.77739 -14.42727 -14.42228 -14.03090 -13.96525 -13.30790 -13.09472 -12.89128 -12.53929 -12.45792 -12.23586 -12.17186 -11.84715 -11.61277 -11.38076 -11.16789 -10.87161 -10.74617 -10.52719 -10.07671 -8.91207 -7.90148 -5.23387 0.29766 0.66340 1.45702 1.46833 1.50210 1.57083 2.02874 2.22956 2.47722 2.73684 3.09983 3.17222 3.30906 3.39705 3.52587 3.75683 3.91265 4.02375 4.14364 4.19617 4.36758 4.50709 4.60550 4.78771 4.86471 4.87682 5.01093 5.10269 5.26348 5.35044 5.54972 5.65510 5.79888 5.94575 6.35462 6.63175 6.92818 7.08140 7.61337 8.57148 9.26931 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.030750 B = 0.002497 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.346174 B =11209.528078 C =11782.463594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.294 1.294 6 H -0.290 1.290 7 C -0.233 4.233 8 H 0.084 0.916 9 N -0.646 5.646 10 C 0.128 3.872 11 C -0.116 4.116 12 C 0.140 3.860 13 N -0.701 5.701 14 C 0.598 3.402 15 O -0.568 6.568 16 C -0.033 4.033 17 C -0.148 4.148 18 C -0.062 4.062 19 C 0.354 3.646 20 F -0.198 7.198 21 F -0.199 7.199 22 N -0.331 5.331 23 H 0.471 0.529 24 N -0.235 5.235 25 C 0.165 3.835 26 H 0.248 0.752 27 H 0.064 0.936 28 H 0.050 0.950 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.414 0.586 33 H 0.166 0.834 34 H 0.184 0.816 35 H 0.012 0.988 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.974 -17.525 9.426 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.808 3.192 4 H -0.189 1.189 5 H -0.222 1.222 6 H -0.217 1.217 7 C -0.362 4.362 8 H 0.102 0.898 9 N -0.373 5.373 10 C 0.002 3.998 11 C -0.135 4.135 12 C 0.016 3.984 13 N -0.352 5.352 14 C 0.383 3.617 15 O -0.446 6.446 16 C -0.192 4.192 17 C -0.177 4.177 18 C -0.189 4.189 19 C 0.299 3.701 20 F -0.179 7.179 21 F -0.180 7.180 22 N -0.052 5.052 23 H 0.322 0.678 24 N -0.074 5.074 25 C 0.040 3.960 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.251 0.749 33 H 0.184 0.816 34 H 0.200 0.800 35 H 0.030 0.970 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -15.377 -16.826 9.375 24.647 hybrid contribution -0.085 0.882 -0.394 0.970 sum -15.462 -15.944 8.981 23.957 Atomic orbital electron populations 1.70012 1.06416 1.25469 1.58380 1.25644 0.96619 1.00911 1.03131 0.84998 0.78212 0.79361 0.76674 1.18928 1.22167 1.21715 1.19482 0.90895 0.83417 1.42377 0.89794 1.46421 1.03785 1.00788 1.86281 1.22697 0.95559 0.83402 0.98096 1.23405 0.96454 0.92845 1.00832 1.21319 0.83861 0.97585 0.95629 1.45830 1.21734 1.29274 1.38331 1.17081 0.81942 0.80729 0.81935 1.90775 1.74280 1.47440 1.32130 1.21803 0.98779 0.98726 0.99852 1.21791 0.93162 1.00928 1.01770 1.22021 1.01306 0.95697 0.99925 1.19862 0.86075 0.77873 0.86244 1.93058 1.92937 1.39093 1.92818 1.93059 1.77683 1.96418 1.50881 1.43225 1.14641 1.19000 1.28287 0.67838 1.73610 0.98433 1.22482 1.12870 1.22266 0.86960 0.90914 0.95886 0.94335 0.91795 0.93274 0.87874 0.89862 0.92274 0.74931 0.81637 0.79965 0.96980 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.93 11.39 21.65 0.25 -57.68 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 3 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 4 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 7 C -0.23 -13.21 10.70 84.03 0.90 -12.31 16 8 H 0.08 4.54 7.83 -2.91 -0.02 4.51 16 9 N -0.65 -33.28 3.70 -716.20 -2.65 -35.94 16 10 C 0.13 4.97 8.51 86.48 0.74 5.71 16 11 C -0.12 -4.05 3.93 -10.14 -0.04 -4.09 16 12 C 0.14 4.29 5.51 86.38 0.48 4.76 16 13 N -0.70 -20.20 5.55 -466.10 -2.59 -22.78 16 14 C 0.60 18.36 7.82 86.75 0.68 19.04 16 15 O -0.57 -20.85 16.93 -3.92 -0.07 -20.91 16 16 C -0.03 -0.84 7.13 42.46 0.30 -0.54 16 17 C -0.15 -3.19 10.73 22.41 0.24 -2.95 16 18 C -0.06 -0.85 6.66 41.41 0.28 -0.57 16 19 C 0.35 2.78 5.79 71.24 0.41 3.19 16 20 F -0.20 -2.53 17.32 44.97 0.78 -1.75 16 21 F -0.20 -2.67 17.32 44.97 0.78 -1.89 16 22 N -0.33 -3.84 6.83 -47.93 -0.33 -4.17 16 23 H 0.47 0.82 8.96 -219.99 -1.97 -1.15 16 24 N -0.24 -4.80 11.92 -48.18 -0.57 -5.37 16 25 C 0.17 7.78 7.08 86.43 0.61 8.40 16 26 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 27 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 29 H 0.10 3.40 8.14 -2.39 -0.02 3.38 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.06 1.99 7.88 -2.39 -0.02 1.97 16 32 H 0.41 10.96 8.20 -92.71 -0.76 10.20 16 33 H 0.17 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.18 -0.66 8.14 -2.39 -0.02 -0.68 16 35 H 0.01 0.61 7.92 -2.39 -0.02 0.59 16 36 H 0.04 2.27 7.17 -2.38 -0.02 2.26 16 Total: -1.00 -78.62 326.19 1.10 -77.51 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -1.58 Total: 7.86 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: 5.06 Total: 17.06 kcal Atomic # 7 Polarization: -120.05 SS G_CDS: -5.90 Total: -125.95 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.07 Total: -20.91 kcal Atomic # 9 Polarization: -5.19 SS G_CDS: 1.56 Total: -3.64 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.62 1.10 -77.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031968158.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.566 kcal (2) G-P(sol) polarization free energy of solvation -78.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds