Wall clock time and date at job start Tue Mar 31 2020 03:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48494 * 109.47197 * 95.01032 * 3 2 1 5 5 H 1.48497 * 109.46819 * 215.01006 * 3 2 1 6 6 H 1.48498 * 109.47048 * 335.00815 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00246 * 174.92327 * 7 2 1 9 9 N 1.36938 * 120.00063 * 354.92493 * 7 2 1 10 10 C 1.47060 * 136.05760 * 6.04677 * 9 7 2 11 11 C 1.53757 * 87.88857 * 152.96521 * 10 9 7 12 12 C 1.47067 * 136.05706 * 186.42095 * 9 7 2 13 13 H 1.09003 * 113.47306 * 92.30329 * 12 9 7 14 14 C 1.52999 * 113.46817 * 321.86166 * 12 9 7 15 15 N 1.46498 * 109.47409 * 74.50760 * 14 12 9 16 16 C 1.34779 * 120.00418 * 180.02562 * 15 14 12 17 17 O 1.21566 * 119.99785 * 359.97438 * 16 15 14 18 18 C 1.47705 * 119.99630 * 180.02562 * 16 15 14 19 19 C 1.41504 * 126.51236 * 179.97438 * 18 16 15 20 20 C 1.35370 * 105.50373 * 179.97438 * 19 18 16 21 21 C 1.50704 * 126.38816 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.46898 * 210.00204 * 21 20 19 23 23 F 1.39901 * 109.46517 * 330.00181 * 21 20 19 24 24 N 1.35033 * 107.22529 * 359.97438 * 20 19 18 25 25 H 0.97003 * 124.88110 * 180.02562 * 24 20 19 26 26 N 1.28466 * 110.23258 * 359.75358 * 24 20 19 27 27 H 0.97005 * 119.99968 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.47161 * 267.69692 * 10 9 7 29 29 H 1.09003 * 113.47055 * 38.13660 * 10 9 7 30 30 H 1.09004 * 114.39720 * 272.67401 * 11 10 9 31 31 H 1.09008 * 114.26541 * 139.79526 * 11 10 9 32 32 H 1.08999 * 109.47457 * 194.50702 * 14 12 9 33 33 H 1.09008 * 109.47380 * 314.50825 * 14 12 9 34 34 H 0.97002 * 119.99534 * 359.97438 * 15 14 12 35 35 H 1.07998 * 127.25251 * 359.97438 * 19 18 16 36 36 H 1.08996 * 109.46692 * 89.99875 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6036 1.9853 1.3947 5 1 3.4908 1.4731 -0.8033 6 1 1.3987 2.6809 -0.5915 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2039 -0.0833 9 7 1.3296 -2.3857 0.1038 10 6 -0.0821 -2.7973 0.1226 11 6 0.3656 -4.1560 -0.4410 12 6 1.6886 -3.8041 0.2532 13 1 1.7351 -4.1332 1.2913 14 6 2.9253 -4.2076 -0.5522 15 7 4.1268 -3.6853 0.1034 16 6 5.3418 -3.9182 -0.4316 17 8 5.4406 -4.5622 -1.4580 18 6 6.5531 -3.3920 0.2297 19 6 7.8889 -3.5533 -0.2082 20 6 8.6499 -2.9057 0.7051 21 6 10.1519 -2.7830 0.6918 22 9 10.6237 -2.6897 2.0056 23 9 10.7063 -3.9102 0.0760 24 7 7.8122 -2.3902 1.6302 25 1 8.0894 -1.8738 2.4031 26 7 6.5949 -2.6772 1.3364 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5025 -2.8610 1.1263 29 1 -0.7097 -2.2271 -0.5624 30 1 0.4277 -4.1940 -1.5286 31 1 -0.1518 -5.0127 -0.0089 32 1 2.9847 -5.2946 -0.6067 33 1 2.8532 -3.7967 -1.5593 34 1 4.0479 -3.1711 0.9221 35 1 8.2297 -4.0817 -1.0863 36 1 10.4384 -1.8888 0.1384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038685044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:11 Heat of formation + Delta-G solvation = -2.339224 kcal Electronic energy + Delta-G solvation = -23852.987362 eV Core-core repulsion = 19818.764092 eV Total energy + Delta-G solvation = -4034.223270 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.114 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -49.52994 -47.55599 -42.95113 -39.21907 -37.99365 -34.10647 -32.37834 -32.13723 -32.08159 -28.16197 -27.73719 -26.52593 -24.06548 -23.46260 -21.78804 -21.60698 -20.02562 -19.29522 -19.02379 -18.09182 -17.52903 -17.26453 -16.47795 -15.93234 -15.85096 -15.25971 -15.18380 -14.40641 -14.38904 -14.13283 -14.00708 -13.84874 -13.75488 -13.34832 -13.14616 -12.90294 -11.99873 -11.90980 -11.55604 -11.18943 -11.08493 -10.98730 -10.79172 -10.58022 -10.12636 -9.84926 -9.83183 -9.70410 -9.56573 -9.22945 -8.82156 -8.56951 -6.89042 -5.78657 -3.10048 1.30952 1.70774 2.33297 3.08091 3.36673 3.41655 3.43570 3.48111 3.55084 3.68778 4.04863 4.32732 4.38211 4.43903 5.05850 5.14513 5.24434 5.39356 5.45740 5.56278 5.73251 5.92385 6.01273 6.10352 6.31636 6.40237 6.53799 6.60112 6.71331 6.86102 7.23922 7.37977 7.45144 7.58310 7.91754 7.96870 8.47695 9.02907 9.69692 10.63067 11.39097 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003896 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.522084 B = 7185.744332 C = 8431.441119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.906 3.094 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.290 1.290 7 C -0.213 4.213 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.161 4.161 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.120 3.880 15 N -0.696 5.696 16 C 0.597 3.403 17 O -0.540 6.540 18 C -0.005 4.005 19 C -0.128 4.128 20 C -0.081 4.081 21 C 0.353 3.647 22 F -0.199 7.199 23 F -0.184 7.184 24 N -0.360 5.360 25 H 0.450 0.550 26 N -0.226 5.226 27 H 0.253 0.747 28 H 0.026 0.974 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.074 0.926 34 H 0.410 0.590 35 H 0.172 0.828 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.833 -6.404 3.064 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.208 1.208 6 H -0.217 1.217 7 C -0.341 4.341 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.029 3.971 11 C -0.200 4.200 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.346 5.346 16 C 0.380 3.620 17 O -0.416 6.416 18 C -0.165 4.165 19 C -0.157 4.157 20 C -0.207 4.207 21 C 0.298 3.702 22 F -0.181 7.181 23 F -0.165 7.165 24 N -0.076 5.076 25 H 0.296 0.704 26 N -0.063 5.063 27 H 0.063 0.937 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.246 0.754 35 H 0.190 0.810 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 16.217 -6.075 3.082 17.589 hybrid contribution 1.166 1.178 0.520 1.738 sum 17.383 -4.896 3.603 18.415 Atomic orbital electron populations 1.69842 1.04986 1.25326 1.56180 1.24790 0.95610 0.97366 1.02485 0.86230 0.78751 0.83802 0.77593 1.21616 1.20792 1.21654 1.18858 0.90577 0.81423 1.43209 0.90122 1.45697 1.02590 0.99947 1.84433 1.22028 0.88601 0.89100 0.97417 1.23722 0.96933 0.98927 1.00416 1.22429 0.91840 0.87709 0.96224 0.93377 1.21898 0.83106 0.97552 0.97826 1.45850 1.05300 1.54509 1.28927 1.16780 0.81642 0.79892 0.83663 1.90777 1.86303 1.41014 1.23548 1.22184 0.95491 1.03549 0.95264 1.21568 0.90680 1.02169 1.01249 1.21799 0.93969 1.08294 0.96680 1.19660 0.84228 0.88633 0.77685 1.93025 1.89588 1.96641 1.38810 1.93061 1.85926 1.55088 1.82449 1.43166 1.02615 1.40272 1.21548 0.70409 1.73737 1.01767 1.14612 1.16200 0.93674 0.95600 0.91292 0.90146 0.92310 0.91889 0.90778 0.75401 0.81014 0.84688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 11.61 55.49 0.64 -26.26 16 2 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 3 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 7 C -0.21 -5.75 10.54 -15.06 -0.16 -5.91 16 8 H 0.08 2.12 7.61 -52.49 -0.40 1.72 16 9 N -0.60 -14.66 3.65 -176.86 -0.64 -15.31 16 10 C 0.15 3.52 7.33 -8.38 -0.06 3.45 16 11 C -0.16 -2.90 8.04 -26.08 -0.21 -3.11 16 12 C 0.13 2.43 4.10 -72.40 -0.30 2.13 16 13 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 14 C 0.12 2.19 5.52 -4.04 -0.02 2.17 16 15 N -0.70 -12.49 5.33 -61.29 -0.33 -12.81 16 16 C 0.60 10.71 7.82 -12.39 -0.10 10.61 16 17 O -0.54 -10.87 16.93 5.31 0.09 -10.78 16 18 C 0.00 -0.07 7.13 -82.77 -0.59 -0.66 16 19 C -0.13 -1.61 10.41 -39.36 -0.41 -2.02 16 20 C -0.08 -0.80 6.84 -82.20 -0.56 -1.37 16 21 C 0.35 2.45 5.83 36.01 0.21 2.66 16 22 F -0.20 -1.54 17.30 2.25 0.04 -1.50 16 23 F -0.18 -1.62 17.05 2.25 0.04 -1.58 16 24 N -0.36 -3.70 6.79 33.50 0.23 -3.47 16 25 H 0.45 3.07 8.96 -190.44 -1.71 1.36 16 26 N -0.23 -3.18 11.92 33.42 0.40 -2.78 16 27 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.75 7.30 -51.93 -0.38 1.37 16 30 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 31 H 0.06 0.89 8.14 -51.92 -0.42 0.46 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.51 8.14 -51.92 -0.42 1.08 16 34 H 0.41 7.37 8.20 -40.82 -0.33 7.04 16 35 H 0.17 1.96 8.06 -52.49 -0.42 1.54 16 36 H 0.14 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 325.94 15.07 4.91 4.91 Total: -1.00 -33.46 325.94 -7.28 -40.74 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -5.34 Total: 4.10 kcal Atomic # 6 Polarization: 10.00 SS G_CDS: -2.29 Total: 7.70 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: 0.30 Total: -60.63 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.08 Total: -3.08 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.46 -7.28 -40.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038685044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.401 kcal (2) G-P(sol) polarization free energy of solvation -33.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds