Wall clock time and date at job start Tue Mar 31 2020 03:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99861 * 2 1 4 4 H 1.48494 * 109.47197 * 95.01032 * 3 2 1 5 5 H 1.48497 * 109.46819 * 215.01006 * 3 2 1 6 6 H 1.48498 * 109.47048 * 335.00815 * 3 2 1 7 7 C 1.38802 * 120.00067 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00246 * 174.92327 * 7 2 1 9 9 N 1.36938 * 120.00063 * 354.92493 * 7 2 1 10 10 C 1.47060 * 136.05760 * 6.04677 * 9 7 2 11 11 C 1.53757 * 87.88857 * 152.96521 * 10 9 7 12 12 C 1.47067 * 136.05706 * 186.42095 * 9 7 2 13 13 H 1.09003 * 113.47306 * 92.30329 * 12 9 7 14 14 C 1.52999 * 113.46817 * 321.86166 * 12 9 7 15 15 N 1.46498 * 109.47409 * 74.50760 * 14 12 9 16 16 C 1.34779 * 120.00418 * 180.02562 * 15 14 12 17 17 O 1.21566 * 119.99785 * 359.97438 * 16 15 14 18 18 C 1.47705 * 119.99630 * 180.02562 * 16 15 14 19 19 C 1.41504 * 126.51236 * 179.97438 * 18 16 15 20 20 C 1.35370 * 105.50373 * 179.97438 * 19 18 16 21 21 C 1.50704 * 126.38816 * 179.97438 * 20 19 18 22 22 F 1.39899 * 109.46898 * 210.00204 * 21 20 19 23 23 F 1.39901 * 109.46517 * 330.00181 * 21 20 19 24 24 N 1.35033 * 107.22529 * 359.97438 * 20 19 18 25 25 H 0.97003 * 124.88110 * 180.02562 * 24 20 19 26 26 N 1.28466 * 110.23258 * 359.75358 * 24 20 19 27 27 H 0.97005 * 119.99968 * 0.02562 * 1 2 3 28 28 H 1.09003 * 113.47161 * 267.69692 * 10 9 7 29 29 H 1.09003 * 113.47055 * 38.13660 * 10 9 7 30 30 H 1.09004 * 114.39720 * 272.67401 * 11 10 9 31 31 H 1.09008 * 114.26541 * 139.79526 * 11 10 9 32 32 H 1.08999 * 109.47457 * 194.50702 * 14 12 9 33 33 H 1.09008 * 109.47380 * 314.50825 * 14 12 9 34 34 H 0.97002 * 119.99534 * 359.97438 * 15 14 12 35 35 H 1.07998 * 127.25251 * 359.97438 * 19 18 16 36 36 H 1.08996 * 109.46692 * 89.99875 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.6036 1.9853 1.3947 5 1 3.4908 1.4731 -0.8033 6 1 1.3987 2.6809 -0.5915 7 6 2.0102 -1.2021 -0.0005 8 1 3.0870 -1.2039 -0.0833 9 7 1.3296 -2.3857 0.1038 10 6 -0.0821 -2.7973 0.1226 11 6 0.3656 -4.1560 -0.4410 12 6 1.6886 -3.8041 0.2532 13 1 1.7351 -4.1332 1.2913 14 6 2.9253 -4.2076 -0.5522 15 7 4.1268 -3.6853 0.1034 16 6 5.3418 -3.9182 -0.4316 17 8 5.4406 -4.5622 -1.4580 18 6 6.5531 -3.3920 0.2297 19 6 7.8889 -3.5533 -0.2082 20 6 8.6499 -2.9057 0.7051 21 6 10.1519 -2.7830 0.6918 22 9 10.6237 -2.6897 2.0056 23 9 10.7063 -3.9102 0.0760 24 7 7.8122 -2.3902 1.6302 25 1 8.0894 -1.8738 2.4031 26 7 6.5949 -2.6772 1.3364 27 1 -0.4850 0.8401 -0.0004 28 1 -0.5025 -2.8610 1.1263 29 1 -0.7097 -2.2271 -0.5624 30 1 0.4277 -4.1940 -1.5286 31 1 -0.1518 -5.0127 -0.0089 32 1 2.9847 -5.2946 -0.6067 33 1 2.8532 -3.7967 -1.5593 34 1 4.0479 -3.1711 0.9221 35 1 8.2297 -4.0817 -1.0863 36 1 10.4384 -1.8888 0.1384 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038685044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:10 Heat of formation + Delta-G solvation = -26.975511 kcal Electronic energy + Delta-G solvation = -23854.055671 eV Core-core repulsion = 19818.764092 eV Total energy + Delta-G solvation = -4035.291580 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.12111 -48.15438 -43.91453 -40.69636 -39.62376 -35.58739 -34.25815 -33.26874 -33.00037 -29.98220 -29.32702 -27.25203 -25.39760 -25.34218 -23.23989 -22.56771 -21.41241 -20.84247 -19.94067 -18.77144 -18.65113 -18.13380 -18.02390 -17.17693 -17.15385 -16.80451 -16.35518 -16.01706 -15.63863 -15.45653 -15.02358 -14.87240 -14.79419 -14.53875 -14.47819 -13.97945 -13.62294 -13.36173 -12.94446 -12.69865 -12.68449 -12.59871 -12.32577 -12.12911 -11.88360 -11.66182 -11.44966 -10.92866 -10.84827 -10.73556 -10.47856 -10.03386 -8.87226 -7.88544 -5.19021 0.30367 0.67904 1.42290 1.43612 1.51231 1.52404 2.05368 2.24183 2.46616 2.63142 3.09228 3.14856 3.32619 3.45764 3.54031 3.89316 3.91670 4.03879 4.18821 4.21934 4.35840 4.51281 4.65282 4.70738 4.89696 5.03434 5.07935 5.10664 5.34052 5.39207 5.59418 5.74513 5.76427 5.97400 6.35613 6.63136 6.94649 7.08721 7.64314 8.64902 9.29592 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.016618 B = 0.003896 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.522084 B = 7185.744332 C = 8431.441119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.068 4.068 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.297 1.297 7 C -0.207 4.207 8 H 0.082 0.918 9 N -0.629 5.629 10 C 0.146 3.854 11 C -0.132 4.132 12 C 0.131 3.869 13 H 0.066 0.934 14 C 0.128 3.872 15 N -0.698 5.698 16 C 0.596 3.404 17 O -0.569 6.569 18 C -0.034 4.034 19 C -0.144 4.144 20 C -0.059 4.059 21 C 0.358 3.642 22 F -0.201 7.201 23 F -0.194 7.194 24 N -0.342 5.342 25 H 0.466 0.534 26 N -0.245 5.245 27 H 0.246 0.754 28 H 0.022 0.978 29 H 0.034 0.966 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.410 0.590 35 H 0.178 0.822 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.072 -6.883 3.728 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.261 4.261 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.224 1.224 7 C -0.335 4.335 8 H 0.100 0.900 9 N -0.355 5.355 10 C 0.020 3.980 11 C -0.171 4.171 12 C 0.024 3.976 13 H 0.084 0.916 14 C 0.004 3.996 15 N -0.347 5.347 16 C 0.381 3.619 17 O -0.447 6.447 18 C -0.192 4.192 19 C -0.173 4.173 20 C -0.187 4.187 21 C 0.303 3.697 22 F -0.183 7.183 23 F -0.175 7.175 24 N -0.060 5.060 25 H 0.315 0.685 26 N -0.083 5.083 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.052 0.948 30 H 0.101 0.899 31 H 0.119 0.881 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.245 0.755 35 H 0.195 0.805 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 18.480 -6.579 3.772 19.975 hybrid contribution 0.538 1.264 0.364 1.421 sum 19.017 -5.316 4.136 20.175 Atomic orbital electron populations 1.70016 1.06260 1.25283 1.58515 1.25523 0.96404 1.00415 1.03745 0.85275 0.77553 0.80078 0.77585 1.21113 1.20107 1.22359 1.19138 0.90831 0.82649 1.40895 0.90003 1.46011 1.03697 1.01264 1.84556 1.22048 0.87632 0.91565 0.96749 1.23536 0.95472 0.97501 1.00544 1.22577 0.93011 0.84671 0.97303 0.91639 1.21738 0.82961 0.98708 0.96205 1.45854 1.05436 1.54590 1.28852 1.17107 0.82251 0.79266 0.83296 1.90744 1.86835 1.42370 1.24795 1.21907 0.95417 1.05425 0.96474 1.21709 0.89908 1.03233 1.02410 1.22198 0.95485 1.05968 0.95019 1.20100 0.81865 0.89758 0.77949 1.93028 1.89340 1.96644 1.39254 1.93048 1.85802 1.56061 1.82613 1.43236 1.01766 1.39260 1.21765 0.68491 1.73659 1.03571 1.15035 1.16056 0.94520 0.96029 0.94783 0.89888 0.88122 0.89542 0.93249 0.75462 0.80469 0.79948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.40 11.61 21.65 0.25 -57.15 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.97 45.98 29.56 68.60 2.03 48.00 16 4 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 7 C -0.21 -11.24 10.54 84.03 0.89 -10.35 16 8 H 0.08 4.32 7.61 -2.91 -0.02 4.30 16 9 N -0.63 -30.75 3.65 -713.45 -2.60 -33.35 16 10 C 0.15 6.68 7.33 83.26 0.61 7.29 16 11 C -0.13 -4.49 8.04 31.02 0.25 -4.24 16 12 C 0.13 4.86 4.10 41.78 0.17 5.03 16 13 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 14 C 0.13 4.54 5.52 86.38 0.48 5.02 16 15 N -0.70 -24.74 5.33 -466.10 -2.48 -27.22 16 16 C 0.60 21.30 7.82 86.74 0.68 21.98 16 17 O -0.57 -22.97 16.93 -3.92 -0.07 -23.04 16 18 C -0.03 -1.01 7.13 42.46 0.30 -0.70 16 19 C -0.14 -3.43 10.41 22.41 0.23 -3.20 16 20 C -0.06 -1.02 6.84 41.41 0.28 -0.74 16 21 C 0.36 3.70 5.83 71.24 0.42 4.11 16 22 F -0.20 -2.43 17.30 44.97 0.78 -1.65 16 23 F -0.19 -2.89 17.05 44.97 0.77 -2.12 16 24 N -0.34 -6.23 6.79 -47.92 -0.33 -6.56 16 25 H 0.47 5.06 8.96 -219.99 -1.97 3.09 16 26 N -0.24 -6.57 11.92 -48.18 -0.57 -7.14 16 27 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 28 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.03 1.78 7.30 -2.39 -0.02 1.76 16 30 H 0.08 2.81 8.12 -2.38 -0.02 2.79 16 31 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 32 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 33 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 34 H 0.41 14.56 8.20 -92.71 -0.76 13.80 16 35 H 0.18 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.18 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -74.21 325.94 0.97 -73.24 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -1.58 Total: 16.18 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 4.77 Total: 20.80 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -5.73 Total: -131.42 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.07 Total: -23.04 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 1.54 Total: -3.77 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -74.21 0.97 -73.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038685044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.264 kcal (2) G-P(sol) polarization free energy of solvation -74.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds