Wall clock time and date at job start Tue Mar 31 2020 05:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00308 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00613 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00058 * 3 2 1 7 7 C 1.38817 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21603 * 120.00257 * 359.72088 * 13 12 11 15 15 C 1.47416 * 119.99544 * 179.72400 * 13 12 11 16 16 C 1.41324 * 126.41188 * 0.02562 * 15 13 12 17 17 N 1.30473 * 108.06834 * 179.97438 * 16 15 13 18 18 N 1.39937 * 108.91706 * 359.97438 * 17 16 15 19 19 C 1.40149 * 125.77434 * 180.02562 * 18 17 16 20 20 C 1.38846 * 120.06728 * 179.70353 * 19 18 17 21 21 C 1.38116 * 119.92961 * 179.67684 * 20 19 18 22 22 C 1.38279 * 120.06797 * 0.61834 * 21 20 19 23 23 C 1.38283 * 120.13772 * 359.67920 * 22 21 20 24 24 C 1.38118 * 120.06146 * 359.97438 * 23 22 21 25 25 C 1.34542 * 108.45351 * 359.75400 * 18 17 16 26 26 H 0.96996 * 120.00458 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 29 29 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 30 30 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 31 31 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 32 32 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 33 33 H 1.07998 * 125.96766 * 359.97438 * 16 15 13 34 34 H 1.07994 * 120.03421 * 359.97438 * 20 19 18 35 35 H 1.08003 * 119.96967 * 180.34006 * 21 20 19 36 36 H 1.08003 * 119.93411 * 179.70263 * 22 21 20 37 37 H 1.07995 * 119.97104 * 180.02562 * 23 22 21 38 38 H 1.08007 * 120.03119 * 180.02562 * 24 23 22 39 39 H 1.07998 * 126.31192 * 180.24058 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8198 -0.0008 12 7 1.7965 -6.0884 -0.0025 13 6 1.1226 -7.2556 -0.0078 14 8 -0.0934 -7.2557 -0.0060 15 6 1.8598 -8.5322 -0.0157 16 6 3.2642 -8.6899 -0.0181 17 7 3.5279 -9.9677 -0.0250 18 7 2.3231 -10.6796 -0.0267 19 6 2.1962 -12.0753 -0.0330 20 6 0.9365 -12.6593 -0.0278 21 6 0.8147 -14.0350 -0.0408 22 6 1.9456 -14.8306 -0.0461 23 6 3.2016 -14.2521 -0.0450 24 6 3.3299 -12.8769 -0.0393 25 6 1.3073 -9.7975 -0.0151 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 2.6855 -3.7149 0.8878 29 1 2.6841 -3.7140 -0.8922 30 1 0.4362 -4.7618 -0.8901 31 1 0.4384 -4.7622 0.8899 32 1 2.7665 -6.0883 -0.0044 33 1 3.9921 -7.8921 -0.0148 34 1 0.0530 -12.0384 -0.0185 35 1 -0.1649 -14.4899 -0.0424 36 1 1.8478 -15.9062 -0.0514 37 1 4.0830 -14.8761 -0.0496 38 1 4.3111 -12.4255 -0.0389 39 1 0.2538 -10.0353 -0.0096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131016530.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:49 Heat of formation + Delta-G solvation = 85.190381 kcal Electronic energy + Delta-G solvation = -21957.347599 eV Core-core repulsion = 18481.149428 eV Total energy + Delta-G solvation = -3476.198172 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.03371 -39.62656 -38.91851 -35.63917 -34.16785 -33.69461 -31.78048 -31.27623 -30.56794 -29.63454 -27.63275 -24.56835 -23.71216 -23.36837 -22.08065 -21.48308 -21.00394 -19.99203 -18.86580 -17.34758 -16.97244 -16.20487 -15.90691 -15.84655 -15.56587 -15.09583 -14.90438 -14.54206 -14.41487 -14.06421 -13.70009 -13.67797 -13.25124 -13.14584 -13.04561 -12.82974 -12.19338 -11.84217 -11.42715 -11.31830 -11.08767 -10.83197 -10.80391 -10.78587 -10.11306 -9.90737 -9.70804 -9.57792 -9.52012 -8.97199 -8.82464 -8.50889 -6.97790 -5.78210 -3.08781 0.28300 0.77685 1.55789 1.82422 1.91521 3.24232 3.31736 3.43510 3.44468 3.48698 3.50412 3.98723 4.23900 4.39567 4.40626 4.58804 4.59684 4.77178 4.81000 4.88610 5.04392 5.16021 5.34774 5.43437 5.51928 5.58418 5.70926 5.78941 5.80991 5.93007 5.98769 6.07119 6.17393 6.18491 6.51636 6.64142 6.73172 6.77747 7.11669 7.66721 7.67776 8.36254 8.39803 9.50734 10.05815 10.40471 11.44355 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.054229 B = 0.001988 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.205174 B =14081.137674 C =14576.859776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.113 3.887 12 N -0.717 5.717 13 C 0.591 3.409 14 O -0.548 6.548 15 C -0.274 4.274 16 C 0.092 3.908 17 N -0.291 5.291 18 N -0.314 5.314 19 C 0.154 3.846 20 C -0.138 4.138 21 C -0.093 4.093 22 C -0.128 4.128 23 C -0.097 4.097 24 C -0.115 4.115 25 C 0.125 3.875 26 H 0.256 0.744 27 H 0.386 0.614 28 H 0.025 0.975 29 H 0.025 0.975 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.398 0.602 33 H 0.199 0.801 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.140 0.860 39 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -31.674 -0.049 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.011 4.011 12 N -0.368 5.368 13 C 0.377 3.623 14 O -0.426 6.426 15 C -0.288 4.288 16 C -0.096 4.096 17 N -0.108 5.108 18 N -0.087 5.087 19 C 0.063 3.937 20 C -0.159 4.159 21 C -0.111 4.111 22 C -0.146 4.146 23 C -0.116 4.116 24 C -0.135 4.135 25 C -0.022 4.022 26 H 0.066 0.934 27 H 0.220 0.780 28 H 0.043 0.957 29 H 0.043 0.957 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.232 0.768 33 H 0.215 0.785 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.157 0.843 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 5.937 -32.454 -0.045 32.992 hybrid contribution 0.003 1.662 -0.009 1.662 sum 5.940 -30.791 -0.054 31.359 Atomic orbital electron populations 1.69664 1.05142 1.25822 1.57232 1.24781 0.95565 0.97813 1.02717 0.86149 0.78604 0.83625 0.77529 1.21650 1.21708 1.20719 1.19196 0.91050 0.83867 1.43361 0.91010 1.42185 1.06016 0.99561 1.89693 1.20765 0.93517 0.85673 0.98458 1.21587 0.95416 0.81387 1.02689 1.45676 1.10294 1.05712 1.75070 1.17104 0.86559 0.82414 0.76195 1.90790 1.13288 1.87575 1.50992 1.20403 0.93436 0.93790 1.21192 1.24296 0.95178 0.94219 0.95946 1.77231 1.03426 1.05209 1.24978 1.45660 1.04817 1.04252 1.53933 1.17610 0.95220 0.78280 1.02635 1.20932 0.95208 0.96046 1.03696 1.21015 0.99436 0.92251 0.98416 1.21293 0.92406 1.00452 1.00454 1.21112 0.98103 0.93841 0.98511 1.20953 0.98031 0.93410 1.01114 1.23016 0.95299 0.88221 0.95680 0.93379 0.77991 0.95734 0.95746 0.91170 0.91148 0.76774 0.78455 0.84857 0.84755 0.85274 0.84920 0.84256 0.79113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.52 5.60 -59.91 -0.34 -18.85 16 10 C 0.14 2.80 6.37 -4.04 -0.03 2.77 16 11 C 0.11 1.93 5.79 -4.04 -0.02 1.91 16 12 N -0.72 -9.87 5.55 -61.38 -0.34 -10.21 16 13 C 0.59 8.74 7.81 -12.52 -0.10 8.64 16 14 O -0.55 -10.11 16.90 5.27 0.09 -10.02 16 15 C -0.27 -3.29 6.13 -105.05 -0.64 -3.93 16 16 C 0.09 0.94 11.50 -16.96 -0.20 0.74 16 17 N -0.29 -3.30 11.77 30.87 0.36 -2.93 16 18 N -0.31 -3.38 3.77 -10.21 -0.04 -3.42 16 19 C 0.15 1.41 6.68 -83.60 -0.56 0.85 16 20 C -0.14 -0.99 9.45 -39.40 -0.37 -1.36 16 21 C -0.09 -0.51 10.04 -39.61 -0.40 -0.91 16 22 C -0.13 -0.66 10.04 -39.55 -0.40 -1.06 16 23 C -0.10 -0.57 10.04 -39.61 -0.40 -0.97 16 24 C -0.12 -0.93 9.65 -39.40 -0.38 -1.31 16 25 C 0.12 1.35 10.60 -16.43 -0.17 1.18 16 26 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 27 H 0.39 10.38 7.67 -40.82 -0.31 10.07 16 28 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.40 4.22 7.43 -40.82 -0.30 3.92 16 33 H 0.20 1.32 7.50 -52.49 -0.39 0.92 16 34 H 0.13 0.76 6.71 -52.49 -0.35 0.41 16 35 H 0.13 0.43 8.06 -52.48 -0.42 0.01 16 36 H 0.13 0.37 8.06 -52.48 -0.42 -0.05 16 37 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 38 H 0.14 1.15 7.68 -52.48 -0.40 0.74 16 39 H 0.19 1.65 7.01 -52.49 -0.37 1.29 16 LS Contribution 344.01 15.07 5.18 5.18 Total: -1.00 -35.29 344.01 -7.93 -43.22 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -4.64 Total: 8.15 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -3.91 Total: -0.85 kcal Atomic # 7 Polarization: -63.35 SS G_CDS: 0.37 Total: -62.98 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.02 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.29 -7.93 -43.22 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131016530.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.407 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds