Wall clock time and date at job start Tue Mar 31 2020 05:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00308 * 3 2 1 5 5 H 1.48506 * 109.46994 * 30.00613 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00058 * 3 2 1 7 7 C 1.38817 * 120.00323 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99815 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99709 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99757 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47198 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99665 * 180.27868 * 12 11 10 14 14 O 1.21603 * 120.00257 * 359.72088 * 13 12 11 15 15 C 1.47416 * 119.99544 * 179.72400 * 13 12 11 16 16 C 1.41324 * 126.41188 * 0.02562 * 15 13 12 17 17 N 1.30473 * 108.06834 * 179.97438 * 16 15 13 18 18 N 1.39937 * 108.91706 * 359.97438 * 17 16 15 19 19 C 1.40149 * 125.77434 * 180.02562 * 18 17 16 20 20 C 1.38846 * 120.06728 * 179.70353 * 19 18 17 21 21 C 1.38116 * 119.92961 * 179.67684 * 20 19 18 22 22 C 1.38279 * 120.06797 * 0.61834 * 21 20 19 23 23 C 1.38283 * 120.13772 * 359.67920 * 22 21 20 24 24 C 1.38118 * 120.06146 * 359.97438 * 23 22 21 25 25 C 1.34542 * 108.45351 * 359.75400 * 18 17 16 26 26 H 0.96996 * 120.00458 * 359.97438 * 1 2 3 27 27 H 0.97000 * 119.99857 * 0.02562 * 9 7 2 28 28 H 1.08995 * 109.47424 * 60.00294 * 10 9 7 29 29 H 1.09006 * 109.46868 * 299.99845 * 10 9 7 30 30 H 1.09009 * 109.46730 * 59.99787 * 11 10 9 31 31 H 1.08998 * 109.46846 * 300.00332 * 11 10 9 32 32 H 0.97001 * 119.99790 * 359.97438 * 12 11 10 33 33 H 1.07998 * 125.96766 * 359.97438 * 16 15 13 34 34 H 1.07994 * 120.03421 * 359.97438 * 20 19 18 35 35 H 1.08003 * 119.96967 * 180.34006 * 21 20 19 36 36 H 1.08003 * 119.93411 * 179.70263 * 22 21 20 37 37 H 1.07995 * 119.97104 * 180.02562 * 23 22 21 38 38 H 1.08007 * 120.03119 * 180.02562 * 24 23 22 39 39 H 1.07998 * 126.31192 * 180.24058 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4975 2.0465 -1.4001 5 1 1.4475 2.6527 0.7002 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6567 -0.0017 11 6 1.0640 -4.8198 -0.0008 12 7 1.7965 -6.0884 -0.0025 13 6 1.1226 -7.2556 -0.0078 14 8 -0.0934 -7.2557 -0.0060 15 6 1.8598 -8.5322 -0.0157 16 6 3.2642 -8.6899 -0.0181 17 7 3.5279 -9.9677 -0.0250 18 7 2.3231 -10.6796 -0.0267 19 6 2.1962 -12.0753 -0.0330 20 6 0.9365 -12.6593 -0.0278 21 6 0.8147 -14.0350 -0.0408 22 6 1.9456 -14.8306 -0.0461 23 6 3.2016 -14.2521 -0.0450 24 6 3.3299 -12.8769 -0.0393 25 6 1.3073 -9.7975 -0.0151 26 1 -0.4850 0.8400 0.0004 27 1 0.3556 -2.3880 -0.0005 28 1 2.6855 -3.7149 0.8878 29 1 2.6841 -3.7140 -0.8922 30 1 0.4362 -4.7618 -0.8901 31 1 0.4384 -4.7622 0.8899 32 1 2.7665 -6.0883 -0.0044 33 1 3.9921 -7.8921 -0.0148 34 1 0.0530 -12.0384 -0.0185 35 1 -0.1649 -14.4899 -0.0424 36 1 1.8478 -15.9062 -0.0514 37 1 4.0830 -14.8761 -0.0496 38 1 4.3111 -12.4255 -0.0389 39 1 0.2538 -10.0353 -0.0096 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131016530.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:46 Heat of formation + Delta-G solvation = 60.949936 kcal Electronic energy + Delta-G solvation = -21958.398744 eV Core-core repulsion = 18481.149428 eV Total energy + Delta-G solvation = -3477.249316 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.133 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -42.83036 -40.51308 -39.77366 -37.26830 -35.51028 -34.70453 -33.13319 -32.32743 -31.41069 -30.44668 -29.14580 -25.95795 -24.69228 -24.31939 -23.16181 -22.81284 -21.72793 -20.98244 -19.71409 -19.25927 -17.81994 -17.02019 -16.90938 -16.85386 -16.47504 -16.33918 -16.30597 -15.61763 -15.21430 -15.04626 -15.03867 -14.94575 -14.54858 -14.45825 -13.87562 -13.77792 -13.06912 -13.02156 -12.66223 -12.64871 -12.51660 -12.44673 -12.06225 -11.98012 -11.83294 -11.52422 -11.06220 -10.96951 -10.40152 -10.07625 -10.05594 -9.21136 -9.03882 -7.94837 -5.25869 -0.36235 0.30064 0.74572 1.09469 1.13883 1.49889 1.52206 1.60562 2.14807 2.35265 2.59960 2.75243 3.26914 3.39445 3.55267 3.82938 3.86538 3.92910 4.06099 4.11244 4.17431 4.22903 4.26935 4.39590 4.48241 4.55590 4.61628 4.66189 4.99243 5.07186 5.10214 5.17639 5.32193 5.36774 5.40905 5.49269 5.51699 5.65678 6.01296 6.26041 6.32227 6.58005 7.22923 7.32367 8.04875 8.27548 9.28811 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.054229 B = 0.001988 C = 0.001920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.205174 B =14081.137674 C =14576.859776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.297 1.297 6 H -0.266 1.266 7 C -0.247 4.247 8 H 0.084 0.916 9 N -0.747 5.747 10 C 0.148 3.852 11 C 0.130 3.870 12 N -0.704 5.704 13 C 0.594 3.406 14 O -0.591 6.591 15 C -0.295 4.295 16 C 0.100 3.900 17 N -0.312 5.312 18 N -0.312 5.312 19 C 0.119 3.881 20 C -0.145 4.145 21 C -0.094 4.094 22 C -0.121 4.121 23 C -0.099 4.099 24 C -0.130 4.130 25 C 0.128 3.872 26 H 0.252 0.748 27 H 0.374 0.626 28 H 0.039 0.961 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.416 0.584 33 H 0.230 0.770 34 H 0.142 0.858 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.298 -33.644 -0.043 34.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.270 4.270 3 Si 0.808 3.192 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.191 1.191 7 C -0.379 4.379 8 H 0.102 0.898 9 N -0.390 5.390 10 C 0.021 3.979 11 C 0.005 3.995 12 N -0.356 5.356 13 C 0.382 3.618 14 O -0.473 6.473 15 C -0.309 4.309 16 C -0.088 4.088 17 N -0.130 5.130 18 N -0.084 5.084 19 C 0.028 3.972 20 C -0.165 4.165 21 C -0.112 4.112 22 C -0.139 4.139 23 C -0.118 4.118 24 C -0.149 4.149 25 C -0.021 4.021 26 H 0.060 0.940 27 H 0.206 0.794 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.253 0.747 33 H 0.246 0.754 34 H 0.160 0.840 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.148 0.852 39 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 7.559 -34.488 -0.039 35.307 hybrid contribution -0.455 2.033 -0.013 2.083 sum 7.104 -32.455 -0.053 33.224 Atomic orbital electron populations 1.69833 1.06805 1.26227 1.59221 1.25668 0.96440 1.01444 1.03467 0.85062 0.77705 0.79039 0.77440 1.21345 1.22366 1.19053 1.19664 0.91773 0.84864 1.41566 0.89832 1.42422 1.05777 1.01085 1.89758 1.20864 0.93605 0.83996 0.99413 1.21161 0.94777 0.82228 1.01304 1.45430 1.11073 1.04348 1.74743 1.17424 0.86107 0.83210 0.75008 1.90765 1.15226 1.88177 1.53091 1.20162 0.94229 0.92718 1.23798 1.24757 0.94877 0.94594 0.94567 1.77207 1.04195 1.05660 1.25895 1.45815 1.04484 1.04968 1.53100 1.17985 0.96478 0.77620 1.05082 1.21190 0.94802 0.97108 1.03442 1.21401 1.00953 0.91578 0.97289 1.21706 0.91808 1.01982 0.98448 1.21424 0.99568 0.93079 0.97691 1.21055 0.97445 0.94488 1.01939 1.23302 0.96123 0.88133 0.94543 0.93955 0.79441 0.94291 0.94295 0.92676 0.92642 0.74665 0.75427 0.83989 0.82192 0.82387 0.82715 0.85175 0.77655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.01 13.06 21.65 0.28 -59.73 16 2 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 3 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 4 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.25 -13.66 9.99 84.03 0.84 -12.82 16 8 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 9 N -0.75 -37.96 5.60 -343.45 -1.92 -39.89 16 10 C 0.15 5.60 6.37 86.38 0.55 6.15 16 11 C 0.13 4.46 5.79 86.38 0.50 4.96 16 12 N -0.70 -18.81 5.55 -466.37 -2.59 -21.40 16 13 C 0.59 17.50 7.81 86.66 0.68 18.17 16 14 O -0.59 -22.25 16.90 -4.04 -0.07 -22.32 16 15 C -0.29 -6.93 6.13 -20.14 -0.12 -7.05 16 16 C 0.10 1.93 11.50 85.65 0.99 2.91 16 17 N -0.31 -6.90 11.77 -56.24 -0.66 -7.56 16 18 N -0.31 -6.62 3.77 -186.21 -0.70 -7.32 16 19 C 0.12 2.12 6.68 38.10 0.25 2.38 16 20 C -0.15 -1.90 9.45 22.39 0.21 -1.69 16 21 C -0.09 -0.81 10.04 22.25 0.22 -0.58 16 22 C -0.12 -0.90 10.04 22.29 0.22 -0.68 16 23 C -0.10 -0.98 10.04 22.25 0.22 -0.76 16 24 C -0.13 -2.02 9.65 22.39 0.22 -1.81 16 25 C 0.13 2.74 10.60 84.24 0.89 3.63 16 26 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.37 20.56 7.67 -92.71 -0.71 19.85 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16 31 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.42 8.04 7.43 -92.71 -0.69 7.35 16 33 H 0.23 2.53 7.50 -2.91 -0.02 2.51 16 34 H 0.14 1.48 6.71 -2.91 -0.02 1.46 16 35 H 0.16 0.51 8.06 -2.91 -0.02 0.48 16 36 H 0.16 0.26 8.06 -2.91 -0.02 0.23 16 37 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 38 H 0.13 2.17 7.68 -2.91 -0.02 2.15 16 39 H 0.21 3.53 7.01 -2.91 -0.02 3.51 16 Total: -1.00 -76.76 344.01 2.20 -74.56 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -0.30 Total: 27.00 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 6.14 Total: 8.79 kcal Atomic # 7 Polarization: -130.30 SS G_CDS: -5.59 Total: -135.89 kcal Atomic # 8 Polarization: -22.25 SS G_CDS: -0.07 Total: -22.32 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -76.76 2.20 -74.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131016530.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.505 kcal (2) G-P(sol) polarization free energy of solvation -76.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds