Wall clock time and date at job start Tue Mar 31 2020 03:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50704 * 109.47196 * 2 1 4 4 N 1.30417 * 125.97475 * 270.21570 * 3 2 1 5 5 N 1.39922 * 108.95537 * 180.25815 * 4 3 2 6 6 C 1.46505 * 125.74411 * 179.71371 * 5 4 3 7 7 C 1.34346 * 108.50602 * 359.71632 * 5 4 3 8 8 Cl 1.73600 * 126.31964 * 179.97438 * 7 5 4 9 9 C 1.38277 * 107.35887 * 359.97438 * 7 5 4 10 10 C 1.47299 * 126.43480 * 180.02562 * 9 7 5 11 11 O 1.21613 * 120.00190 * 90.02347 * 10 9 7 12 12 N 1.34777 * 119.99559 * 270.02032 * 10 9 7 13 13 C 1.46499 * 119.99665 * 179.72407 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 N 1.46499 * 109.47198 * 179.97438 * 14 13 12 16 16 C 1.36936 * 119.99757 * 179.97438 * 15 14 13 17 17 H 1.07992 * 120.00476 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99709 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00319 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99862 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47141 * 59.99751 * 20 18 16 22 22 H 1.48504 * 109.47032 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46993 * 300.00028 * 20 18 16 24 24 H 1.09005 * 109.47443 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47699 * 299.99966 * 1 2 3 26 26 H 1.09001 * 109.47429 * 60.00342 * 1 2 3 27 27 H 1.09006 * 109.47129 * 240.00118 * 2 1 3 28 28 H 1.09001 * 109.47429 * 119.99658 * 2 1 3 29 29 H 1.09000 * 109.46861 * 269.99774 * 6 5 4 30 30 H 1.08997 * 109.47254 * 30.00107 * 6 5 4 31 31 H 1.09000 * 109.46913 * 150.00205 * 6 5 4 32 32 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 33 33 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 34 34 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 35 35 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 36 36 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 37 37 H 0.97000 * 120.00386 * 359.97438 * 15 14 13 38 38 H 0.96996 * 120.00448 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2839 2.1445 -1.0554 5 7 2.7370 3.4034 -0.6459 6 6 3.1300 4.5015 -1.5325 7 6 2.7509 3.4354 0.6971 8 17 3.2349 4.7757 1.6886 9 6 2.3085 2.2038 1.1438 10 6 2.1595 1.7844 2.5479 11 8 1.1069 1.9673 3.1288 12 7 3.1899 1.1979 3.1889 13 6 3.0437 0.7862 4.5872 14 6 4.3515 0.1584 5.0734 15 7 4.2056 -0.2527 6.4720 16 6 5.2541 -0.8438 7.1248 17 1 6.1888 -1.0066 6.6090 18 6 5.1160 -1.2329 8.4502 19 7 3.9771 -1.0341 9.0791 20 14 6.5466 -2.0386 9.3410 21 1 7.7051 -1.1098 9.3587 22 1 6.1455 -2.3572 10.7350 23 1 6.9262 -3.2901 8.6374 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 4.1946 4.4263 -1.7539 30 1 2.5607 4.4412 -2.4600 31 1 2.9272 5.4540 -1.0429 32 1 4.0296 1.0523 2.7257 33 1 2.8090 1.6569 5.1997 34 1 2.2381 0.0566 4.6689 35 1 4.5862 -0.7122 4.4610 36 1 5.1573 0.8880 4.9919 37 1 3.3662 -0.1062 6.9355 38 1 3.8804 -1.3063 10.0051 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147022381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:32:41 Heat of formation + Delta-G solvation = 15.172120 kcal Electronic energy + Delta-G solvation = -21574.419207 eV Core-core repulsion = 18092.751966 eV Total energy + Delta-G solvation = -3481.667241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.66900 -40.38656 -38.20154 -37.28437 -35.85275 -35.46351 -33.24257 -32.83052 -31.51118 -29.43954 -27.88990 -25.76226 -24.79627 -23.55878 -22.91923 -21.71037 -20.84185 -19.35502 -18.88287 -17.54132 -17.17955 -16.79347 -16.74826 -16.43336 -16.03107 -15.45014 -15.25835 -15.03088 -14.86155 -14.62005 -14.46823 -14.08616 -13.71406 -13.61944 -13.05976 -13.02269 -12.90676 -12.79060 -12.61478 -12.54839 -12.51599 -12.22403 -12.10432 -11.86366 -11.75699 -11.19108 -10.95775 -10.42289 -10.18063 -9.85575 -9.04038 -7.94406 -5.25607 0.10189 0.23168 1.11204 1.40608 1.41240 1.50088 1.53626 1.59717 2.14644 2.60040 3.17273 3.39701 3.63046 3.84749 4.04562 4.10426 4.12005 4.21842 4.26065 4.29880 4.35623 4.41694 4.56795 4.59137 4.62159 4.99991 5.03970 5.04429 5.14721 5.15898 5.32663 5.34732 5.45513 5.50943 6.25700 6.26261 6.45727 7.12715 7.32768 8.04750 8.27971 9.29082 Molecular weight = 300.11amu Principal moments of inertia in cm(-1) A = 0.020495 B = 0.003042 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.839365 B = 9201.793002 C = 9868.474608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.122 3.878 4 N -0.280 5.280 5 N -0.346 5.346 6 C 0.079 3.921 7 C 0.158 3.842 8 Cl 0.024 6.976 9 C -0.279 4.279 10 C 0.601 3.399 11 O -0.569 6.569 12 N -0.699 5.699 13 C 0.128 3.872 14 C 0.149 3.851 15 N -0.746 5.746 16 C -0.249 4.249 17 H 0.082 0.918 18 C -0.075 4.075 19 N -0.970 5.970 20 Si 0.978 3.022 21 H -0.276 1.276 22 H -0.297 1.297 23 H -0.275 1.275 24 H 0.084 0.916 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.414 0.586 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.039 0.961 36 H 0.036 0.964 37 H 0.375 0.625 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.201 10.469 -26.261 28.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.044 4.044 4 N -0.103 5.103 5 N -0.127 5.127 6 C -0.059 4.059 7 C -0.001 4.001 8 Cl 0.052 6.948 9 C -0.295 4.295 10 C 0.386 3.614 11 O -0.448 6.448 12 N -0.350 5.350 13 C 0.004 3.996 14 C 0.023 3.977 15 N -0.390 5.390 16 C -0.380 4.380 17 H 0.100 0.900 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.807 3.193 21 H -0.202 1.202 22 H -0.223 1.223 23 H -0.201 1.201 24 H 0.103 0.897 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.125 0.875 28 H 0.104 0.896 29 H 0.123 0.877 30 H 0.133 0.867 31 H 0.125 0.875 32 H 0.251 0.749 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.206 0.794 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.654 10.836 -27.133 29.264 hybrid contribution 0.634 -0.016 1.840 1.946 sum -1.019 10.820 -25.293 27.529 Atomic orbital electron populations 1.21682 0.93425 1.03324 1.01634 1.20202 0.96904 0.86701 1.05012 1.22572 0.96362 0.97773 0.87731 1.77238 1.21605 0.90048 1.21427 1.48743 1.48741 1.12698 1.02534 1.22528 1.03671 0.85146 0.94563 1.21978 1.01692 0.91435 0.85017 1.98456 1.89314 1.41776 1.65287 1.19683 1.20242 0.95253 0.94324 1.17302 0.82987 0.76476 0.84639 1.90788 1.29122 1.56372 1.68515 1.45726 1.16125 1.60433 1.12728 1.21227 0.98300 0.98959 0.81148 1.20835 0.94440 0.96916 0.85541 1.42401 1.14611 1.73006 1.08935 1.19609 0.93578 1.30643 0.94210 0.89974 1.25649 0.99887 1.03237 0.98008 1.69823 1.26336 1.54448 1.11455 0.85149 0.78552 0.78586 0.77064 1.20180 1.22319 1.20101 0.89722 0.94263 0.92093 0.87460 0.89621 0.87716 0.86739 0.87542 0.74897 0.92544 0.92124 0.94311 0.94645 0.79371 0.93896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.89 71.98 0.71 -1.97 16 2 C -0.05 -0.92 6.33 29.85 0.19 -0.73 16 3 C 0.12 2.80 6.52 43.53 0.28 3.09 16 4 N -0.28 -6.09 12.49 -46.66 -0.58 -6.68 16 5 N -0.35 -6.39 3.98 -357.40 -1.42 -7.81 16 6 C 0.08 0.66 11.28 127.77 1.44 2.10 16 7 C 0.16 3.49 7.54 84.32 0.64 4.13 16 8 Cl 0.02 0.47 28.56 -2.72 -0.08 0.39 16 9 C -0.28 -7.24 5.88 -20.12 -0.12 -7.36 16 10 C 0.60 18.62 7.20 86.63 0.62 19.24 16 11 O -0.57 -22.37 17.11 -4.07 -0.07 -22.44 16 12 N -0.70 -19.71 5.55 -466.49 -2.59 -22.30 16 13 C 0.13 4.42 5.79 86.38 0.50 4.92 16 14 C 0.15 5.71 6.37 86.38 0.55 6.26 16 15 N -0.75 -37.89 5.60 -343.45 -1.92 -39.81 16 16 C -0.25 -13.75 9.99 84.03 0.84 -12.91 16 17 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 18 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 19 N -0.97 -59.80 13.06 21.65 0.28 -59.52 16 20 Si 0.98 45.64 29.55 68.60 2.03 47.67 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 22 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H 0.08 1.26 8.14 -2.38 -0.02 1.24 16 25 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.09 1.65 8.01 -2.39 -0.02 1.63 16 29 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.11 0.60 7.77 -2.39 -0.02 0.58 16 32 H 0.41 9.39 8.46 -92.71 -0.78 8.61 16 33 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 34 H 0.06 2.24 8.14 -2.39 -0.02 2.23 16 35 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.04 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.37 20.52 7.67 -92.71 -0.71 19.81 16 38 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -73.38 348.99 1.37 -72.01 By element: Atomic # 1 Polarization: 25.96 SS G_CDS: -0.40 Total: 25.56 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: 6.12 Total: 12.92 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -6.24 Total: -136.11 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.07 Total: -22.44 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -0.08 Total: 0.39 kcal Total: -73.38 1.37 -72.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147022381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.186 kcal (2) G-P(sol) polarization free energy of solvation -73.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds