Wall clock time and date at job start Tue Mar 31 2020 03:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46938 * 59.99973 * 8 6 4 10 10 H 1.48494 * 109.46914 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46873 * 299.99981 * 8 6 4 12 12 N 1.46496 * 109.46995 * 120.00259 * 2 1 3 13 13 C 1.46503 * 120.00249 * 60.00308 * 12 2 1 14 14 S 1.65603 * 119.99847 * 240.00000 * 12 2 1 15 15 O 1.42105 * 106.40178 * 203.54115 * 14 12 2 16 16 O 1.42100 * 106.40428 * 336.46445 * 14 12 2 17 17 N 1.65603 * 107.21853 * 90.00274 * 14 12 2 18 18 C 1.46504 * 119.99815 * 64.99851 * 17 14 12 19 19 C 1.50696 * 109.46955 * 165.00318 * 18 17 14 20 20 C 1.38620 * 120.45010 * 94.71882 * 19 18 17 21 21 C 1.38571 * 118.39965 * 179.80243 * 20 19 18 22 22 N 1.32347 * 119.10857 * 0.47401 * 21 20 19 23 23 C 1.31782 * 120.81720 * 359.74469 * 22 21 20 24 24 N 1.31811 * 121.75279 * 0.02562 * 23 22 21 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.46807 * 89.99603 * 13 12 2 30 30 H 1.08998 * 109.47196 * 209.99887 * 13 12 2 31 31 H 1.09000 * 109.46808 * 330.00267 * 13 12 2 32 32 H 0.96992 * 120.00147 * 244.99971 * 17 14 12 33 33 H 1.09004 * 109.47272 * 285.00087 * 18 17 14 34 34 H 1.09001 * 109.47328 * 45.00178 * 18 17 14 35 35 H 1.08001 * 120.80045 * 0.02562 * 20 19 18 36 36 H 1.08007 * 120.44823 * 180.22129 * 21 20 19 37 37 H 1.08000 * 119.12519 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.8260 -2.5199 -4.0079 10 1 1.8271 -0.4196 -5.2204 11 1 3.8065 -1.1206 -4.0082 12 7 2.0184 -0.6906 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9704 0.1141 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1830 1.5749 17 7 1.9607 0.8089 3.3999 18 6 1.1510 -0.0355 4.2817 19 6 0.6168 0.7945 5.4204 20 6 -0.6465 1.3603 5.3451 21 6 -1.0969 2.1121 6.4184 22 7 -0.3078 2.2721 7.4688 23 6 0.8896 1.7229 7.5035 24 7 1.3494 0.9978 6.5034 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1620 -3.4843 29 1 2.4158 -2.7377 0.9715 30 1 1.6239 -2.2854 2.5001 31 1 0.6905 -2.3003 0.9844 32 1 1.9054 1.7748 3.4683 33 1 0.3188 -0.4569 3.7177 34 1 1.7670 -0.8426 4.6782 35 1 -1.2662 1.2155 4.4725 36 1 -2.0772 2.5650 6.3964 37 1 1.5111 1.8715 8.3742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212046269.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:47 Heat of formation + Delta-G solvation = -21.244170 kcal Electronic energy + Delta-G solvation = -22677.313349 eV Core-core repulsion = 19196.110685 eV Total energy + Delta-G solvation = -3481.202663 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.26357 -36.75529 -36.26107 -35.89215 -35.26522 -33.49396 -32.61297 -32.10488 -29.14437 -27.04999 -25.63848 -25.16099 -24.64432 -22.92347 -20.85114 -18.97233 -17.84627 -17.76045 -17.17756 -16.80030 -16.23245 -15.75893 -15.70683 -15.14024 -14.78503 -14.35572 -14.17400 -13.59376 -13.51716 -13.26789 -13.00497 -12.82456 -12.07987 -11.78625 -11.68822 -11.50910 -11.38816 -11.27241 -11.16504 -10.99610 -10.93242 -10.82770 -10.52822 -10.32119 -10.05533 -9.95113 -9.54257 -9.47826 -9.28757 -8.47821 -8.03375 -6.09822 -4.16351 0.55082 0.71903 1.20878 3.29108 3.32595 3.33632 3.37656 3.62017 3.69981 3.90076 4.09240 4.14764 4.38571 4.66185 4.78673 4.93305 5.12850 5.20158 5.21969 5.35748 5.49088 5.53079 5.79440 6.07541 6.08980 6.32218 6.57539 6.70275 6.71700 6.73841 6.94973 7.01137 7.42449 7.59562 7.75540 7.80335 8.00590 8.24356 8.85688 9.49647 10.95859 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.026706 B = 0.004032 C = 0.003770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.186385 B = 6942.937830 C = 7424.878979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.267 3.733 3 H 0.059 0.941 4 C -0.521 4.521 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.989 5.989 13 C 0.107 3.893 14 S 2.781 3.219 15 O -0.991 6.991 16 O -0.970 6.970 17 N -1.127 6.127 18 C 0.171 3.829 19 C 0.170 3.830 20 C -0.210 4.210 21 C 0.147 3.853 22 N -0.522 5.522 23 C 0.292 3.708 24 N -0.505 5.505 25 H 0.034 0.966 26 H 0.010 0.990 27 H 0.093 0.907 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.413 0.587 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.154 0.846 36 H 0.170 0.830 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 -0.052 15.501 16.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.165 3.835 3 H 0.077 0.923 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.789 3.211 15 O -0.974 6.974 16 O -0.954 6.954 17 N -0.885 5.885 18 C 0.043 3.957 19 C 0.022 3.978 20 C -0.232 4.232 21 C -0.019 4.019 22 N -0.236 5.236 23 C 0.005 3.995 24 N -0.219 5.219 25 H 0.053 0.947 26 H 0.029 0.971 27 H 0.111 0.889 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.245 0.755 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.172 0.828 36 H 0.188 0.812 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.762 0.034 16.143 16.830 hybrid contribution -0.764 -0.109 -1.551 1.732 sum -5.526 -0.075 14.592 15.604 Atomic orbital electron populations 1.22121 0.98265 0.99713 1.00617 1.18745 0.91274 0.93035 0.80479 0.92308 1.21294 1.31679 1.13050 0.90021 0.91959 1.24900 0.94937 0.94994 0.99001 1.69842 1.36527 1.22661 1.23913 0.86549 0.79387 0.79562 0.81866 1.20230 1.21235 1.20150 1.57717 1.70077 1.19764 1.35655 1.21191 1.01899 0.82124 0.98716 1.01994 0.73542 0.73234 0.72327 1.93551 1.68802 1.60602 1.74448 1.93625 1.73999 1.56055 1.71686 1.56246 1.62510 1.17303 1.52410 1.20086 0.96106 0.92120 0.87354 1.21690 0.90275 0.92834 0.93037 1.22925 0.98237 1.00143 1.01913 1.23284 0.98960 0.91833 0.87802 1.68425 1.06198 1.21565 1.27397 1.25045 0.90059 0.88360 0.96080 1.68303 1.36589 1.15761 1.01263 0.94714 0.97075 0.88877 0.92641 0.93089 0.93357 0.90852 0.75498 0.89462 0.88323 0.82830 0.81239 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.14 8.95 37.16 0.33 -2.80 16 2 C 0.27 6.28 2.62 -69.08 -0.18 6.09 16 3 H 0.06 1.54 6.91 -51.93 -0.36 1.18 16 4 C -0.52 -13.69 8.37 -34.44 -0.29 -13.98 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.26 11.32 55.43 0.63 -23.63 16 8 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 N -0.99 -19.39 3.12 -115.85 -0.36 -19.75 16 13 C 0.11 1.77 9.53 59.85 0.57 2.34 16 14 S 2.78 52.65 6.10 -107.50 -0.66 52.00 16 15 O -0.99 -20.12 16.68 -57.17 -0.95 -21.08 16 16 O -0.97 -22.21 16.70 -57.17 -0.95 -23.17 16 17 N -1.13 -16.09 6.05 -11.65 -0.07 -16.16 16 18 C 0.17 2.01 6.60 -5.19 -0.03 1.98 16 19 C 0.17 1.90 6.22 -82.24 -0.51 1.38 16 20 C -0.21 -1.87 9.84 -39.32 -0.39 -2.25 16 21 C 0.15 1.25 11.30 -17.21 -0.19 1.05 16 22 N -0.52 -5.34 10.44 -14.58 -0.15 -5.49 16 23 C 0.29 2.99 12.29 -92.15 -1.13 1.86 16 24 N -0.50 -6.08 10.38 -10.80 -0.11 -6.20 16 25 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 26 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 28 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.65 7.79 -51.93 -0.40 0.24 16 31 H 0.07 1.16 6.43 -51.93 -0.33 0.82 16 32 H 0.41 5.43 8.64 -34.47 -0.30 5.13 16 33 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.10 1.20 7.75 -51.93 -0.40 0.80 16 35 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.17 0.89 8.06 -52.48 -0.42 0.46 16 37 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 327.40 15.07 4.93 4.93 Total: -1.00 -33.49 327.40 -9.17 -42.66 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.53 Total: 2.80 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.92 Total: -2.72 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -0.07 Total: -71.22 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.91 Total: -44.25 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 52.65 SS G_CDS: -0.66 Total: 52.00 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.49 -9.17 -42.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212046269.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.412 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds