Wall clock time and date at job start Tue Mar 31 2020 03:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31810 * 119.12426 * 2 1 4 4 C 1.32321 * 120.82018 * 180.02562 * 3 2 1 5 5 C 1.38622 * 119.10184 * 0.02562 * 4 3 2 6 6 C 1.38577 * 118.40070 * 0.26933 * 5 4 3 7 7 C 1.50699 * 120.44857 * 179.72389 * 6 5 4 8 8 N 1.46494 * 109.46812 * 95.40241 * 7 6 5 9 9 C 1.36938 * 120.00524 * 275.35682 * 8 7 6 10 10 H 1.08004 * 119.99811 * 140.87208 * 9 8 7 11 11 C 1.38810 * 120.00057 * 320.87265 * 9 8 7 12 12 N 1.31618 * 120.00068 * 161.37244 * 11 9 8 13 13 Si 1.86798 * 119.99915 * 341.38271 * 11 9 8 14 14 H 1.48497 * 109.47482 * 95.15645 * 13 11 9 15 15 H 1.48502 * 109.47004 * 215.15546 * 13 11 9 16 16 H 1.48507 * 109.46948 * 335.15446 * 13 11 9 17 17 S 1.65609 * 119.99603 * 95.36073 * 8 7 6 18 18 O 1.42105 * 106.39974 * 203.53578 * 17 8 7 19 19 O 1.42096 * 106.40039 * 336.45848 * 17 8 7 20 20 N 1.65596 * 107.21910 * 90.00021 * 17 8 7 21 21 C 1.46505 * 120.00023 * 89.99618 * 20 17 8 22 22 C 1.46500 * 119.99972 * 269.99806 * 20 17 8 23 23 N 1.31782 * 119.12468 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47189 * 89.99823 * 1 2 3 25 25 H 1.08999 * 109.46904 * 209.99739 * 1 2 3 26 26 H 1.08998 * 109.46909 * 329.99875 * 1 2 3 27 27 H 1.07993 * 120.44739 * 180.02562 * 4 3 2 28 28 H 1.08000 * 120.79601 * 180.02562 * 5 4 3 29 29 H 1.08995 * 109.46984 * 215.40349 * 7 6 5 30 30 H 1.09003 * 109.47020 * 335.40626 * 7 6 5 31 31 H 0.96998 * 120.00078 * 179.97438 * 12 11 9 32 32 H 1.09004 * 109.46721 * 90.00709 * 21 20 17 33 33 H 1.09002 * 109.46945 * 210.00076 * 21 20 17 34 34 H 1.08991 * 109.47383 * 329.99877 * 21 20 17 35 35 H 1.09004 * 109.46895 * 89.99745 * 22 20 17 36 36 H 1.09001 * 109.47207 * 209.99583 * 22 20 17 37 37 H 1.09005 * 109.46912 * 330.00235 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4712 1.1906 -0.0005 5 6 4.1809 -0.0001 -0.0016 6 6 3.4713 -1.1904 -0.0078 7 6 4.1962 -2.5116 -0.0155 8 7 4.3177 -3.0098 1.3567 9 6 5.3518 -2.5883 2.1492 10 1 5.1820 -2.3866 3.1966 11 6 6.6183 -2.4203 1.6065 12 7 7.5117 -1.6861 2.2352 13 14 7.0547 -3.2361 -0.0163 14 1 6.8418 -2.2739 -1.1271 15 1 8.4788 -3.6565 0.0082 16 1 6.1906 -4.4265 -0.2201 17 16 3.2043 -4.0829 1.9496 18 8 3.2343 -3.9517 3.3643 19 8 2.0249 -3.9051 1.1774 20 7 3.7610 -5.6050 1.6094 21 6 4.6212 -6.3018 2.5689 22 6 3.3933 -6.2546 0.3488 23 7 2.1484 -1.1512 -0.0005 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.9906 2.1374 -0.0001 28 1 5.2609 -0.0001 -0.0016 29 1 3.6362 -3.2297 -0.6145 30 1 5.1900 -2.3783 -0.4430 31 1 8.3968 -1.5691 1.8561 32 1 4.0042 -6.8792 3.2575 33 1 5.2935 -6.9726 2.0338 34 1 5.2060 -5.5724 3.1292 35 1 4.1325 -6.0112 -0.4145 36 1 3.3614 -7.3346 0.4924 37 1 2.4125 -5.9012 0.0305 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323878685.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:20 Heat of formation + Delta-G solvation = -27.415644 kcal Electronic energy + Delta-G solvation = -23820.759388 eV Core-core repulsion = 20339.289109 eV Total energy + Delta-G solvation = -3481.470279 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -42.00707 -38.17146 -38.01438 -36.86294 -36.61539 -34.83990 -34.25505 -33.57003 -29.59363 -28.92902 -28.61086 -26.15284 -25.33372 -24.29003 -23.28489 -20.27304 -19.32418 -18.81558 -18.49663 -18.18576 -17.49245 -17.14110 -16.68789 -16.10251 -16.07378 -15.45849 -15.26842 -14.93237 -14.75193 -14.56383 -14.28321 -13.98391 -13.83508 -13.42835 -13.41031 -13.22303 -13.19788 -12.95541 -12.88222 -12.69019 -12.51605 -12.31643 -12.27560 -11.89399 -11.73476 -11.60556 -10.97326 -10.40439 -10.34436 -9.99752 -9.86797 -8.46517 -6.16863 -0.28490 0.02223 0.16492 1.24890 1.39319 1.47953 2.15107 2.22922 2.62322 2.84993 2.90873 2.99231 3.16745 3.55417 3.59444 3.92686 4.04607 4.15631 4.20256 4.34437 4.51526 4.52691 4.56318 4.60961 4.72998 4.76751 4.89727 4.94504 4.95884 5.05541 5.07386 5.15395 5.52256 5.59359 5.81212 6.08374 6.21011 7.00445 7.05157 7.16105 8.66459 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.014061 B = 0.008582 C = 0.006299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.913076 B = 3262.048985 C = 4444.047645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.288 3.712 3 N -0.532 5.532 4 C 0.148 3.852 5 C -0.215 4.215 6 C 0.152 3.848 7 C 0.161 3.839 8 N -0.860 5.860 9 C -0.311 4.311 10 H 0.062 0.938 11 C 0.039 3.961 12 N -0.892 5.892 13 Si 0.917 3.083 14 H -0.249 1.249 15 H -0.287 1.287 16 H -0.237 1.237 17 S 2.739 3.261 18 O -1.022 7.022 19 O -0.992 6.992 20 N -1.023 6.023 21 C 0.093 3.907 22 C 0.080 3.920 23 N -0.518 5.518 24 H 0.104 0.896 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.204 0.796 28 H 0.150 0.850 29 H 0.103 0.897 30 H 0.084 0.916 31 H 0.282 0.718 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.098 0.902 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -3.317 -9.265 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.020 3.980 3 N -0.247 5.247 4 C -0.018 4.018 5 C -0.238 4.238 6 C 0.004 3.996 7 C 0.034 3.966 8 N -0.691 5.691 9 C -0.447 4.447 10 H 0.080 0.920 11 C -0.169 4.169 12 N -0.530 5.530 13 Si 0.741 3.259 14 H -0.175 1.175 15 H -0.213 1.213 16 H -0.160 1.160 17 S 2.756 3.244 18 O -1.006 7.006 19 O -0.976 6.976 20 N -0.863 5.863 21 C -0.052 4.052 22 C -0.065 4.065 23 N -0.234 5.234 24 H 0.122 0.878 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.221 0.779 28 H 0.168 0.832 29 H 0.121 0.879 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.328 -3.183 -8.772 11.275 hybrid contribution 2.051 -0.210 -0.200 2.071 sum -4.277 -3.393 -8.972 10.503 Atomic orbital electron populations 1.20621 0.83620 1.04378 1.04977 1.24004 0.99779 0.83324 0.90853 1.68302 1.10639 1.30252 1.15532 1.23740 0.89418 0.99395 0.89218 1.22919 1.03518 0.94289 1.03040 1.22257 0.89944 0.97119 0.90254 1.20477 0.99052 0.91604 0.85418 1.53509 1.43803 1.51789 1.19962 1.18448 0.87341 1.45191 0.93726 0.91982 1.26074 0.94553 0.94731 1.01562 1.69917 1.06592 1.34569 1.41879 0.86265 0.78122 0.81604 0.79915 1.17458 1.21340 1.15983 1.04213 0.74382 0.72886 0.72940 1.93435 1.87748 1.86576 1.32873 1.93515 1.46650 1.85733 1.71682 1.58090 1.65270 1.34484 1.28467 1.21515 0.94088 0.97661 0.91935 1.21719 1.00707 1.00146 0.83953 1.68263 1.09644 1.31145 1.14331 0.87773 0.90210 0.88432 0.77910 0.83250 0.87888 0.89803 0.90835 0.92187 0.88796 0.92984 0.92475 0.88365 0.90787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.09 10.32 71.24 0.74 -1.35 16 2 C 0.29 10.38 7.64 138.75 1.06 11.44 16 3 N -0.53 -18.19 10.33 -187.84 -1.94 -20.13 16 4 C 0.15 4.72 11.31 84.71 0.96 5.68 16 5 C -0.21 -7.92 9.84 22.44 0.22 -7.70 16 6 C 0.15 6.25 6.37 42.56 0.27 6.52 16 7 C 0.16 6.57 4.64 85.63 0.40 6.96 16 8 N -0.86 -39.80 2.50 -347.19 -0.87 -40.67 16 9 C -0.31 -16.32 9.52 84.03 0.80 -15.52 16 10 H 0.06 3.82 7.65 -2.91 -0.02 3.80 16 11 C 0.04 1.92 5.37 84.86 0.46 2.38 16 12 N -0.89 -47.46 13.97 21.65 0.30 -47.16 16 13 Si 0.92 36.35 24.85 68.60 1.70 38.05 16 14 H -0.25 -8.94 6.73 99.48 0.67 -8.27 16 15 H -0.29 -11.39 7.11 99.48 0.71 -10.69 16 16 H -0.24 -8.59 7.11 99.48 0.71 -7.89 16 17 S 2.74 124.10 5.98 -56.49 -0.34 123.76 16 18 O -1.02 -54.16 16.17 -128.00 -2.07 -56.23 16 19 O -0.99 -45.37 15.35 -128.00 -1.97 -47.34 16 20 N -1.02 -36.44 3.64 -562.66 -2.05 -38.49 16 21 C 0.09 2.96 10.29 127.77 1.31 4.27 16 22 C 0.08 2.15 10.66 127.77 1.36 3.51 16 23 N -0.52 -21.38 9.93 -176.03 -1.75 -23.12 16 24 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.20 4.64 8.06 -2.91 -0.02 4.61 16 28 H 0.15 5.33 8.06 -2.91 -0.02 5.31 16 29 H 0.10 3.76 7.60 -2.39 -0.02 3.74 16 30 H 0.08 3.26 2.87 -2.39 -0.01 3.25 16 31 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 32 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.09 2.30 8.07 -2.39 -0.02 2.28 16 34 H 0.05 1.92 7.79 -2.39 -0.02 1.91 16 35 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 36 H 0.10 1.97 8.07 -2.39 -0.02 1.95 16 37 H 0.07 2.06 7.02 -2.38 -0.02 2.04 16 Total: -1.00 -69.97 323.84 -0.35 -70.32 By element: Atomic # 1 Polarization: 23.75 SS G_CDS: 1.05 Total: 24.80 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 7.57 Total: 16.20 kcal Atomic # 7 Polarization: -163.26 SS G_CDS: -6.30 Total: -169.57 kcal Atomic # 8 Polarization: -99.53 SS G_CDS: -4.03 Total: -103.57 kcal Atomic # 14 Polarization: 36.35 SS G_CDS: 1.70 Total: 38.05 kcal Atomic # 16 Polarization: 124.10 SS G_CDS: -0.34 Total: 123.76 kcal Total: -69.97 -0.35 -70.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323878685.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.905 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.62 seconds