Wall clock time and date at job start Tue Mar 31 2020 03:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35305 * 125.86241 * 2 1 4 4 C 1.35350 * 106.17300 * 180.26906 * 3 2 1 5 5 C 1.50705 * 126.75039 * 180.02562 * 4 3 2 6 6 N 1.46500 * 109.47246 * 94.95154 * 5 4 3 7 7 S 1.65598 * 120.00012 * 164.99884 * 6 5 4 8 8 O 1.42100 * 104.27447 * 181.06615 * 7 6 5 9 9 O 1.42095 * 104.27733 * 308.92366 * 7 6 5 10 10 C 1.81399 * 104.44872 * 64.99645 * 7 6 5 11 11 C 1.53004 * 109.47138 * 173.81285 * 10 7 6 12 12 C 1.50700 * 115.55039 * 65.19156 * 11 10 7 13 13 H 1.08000 * 120.00198 * 264.78606 * 12 11 10 14 14 C 1.37875 * 119.99885 * 84.78473 * 12 11 10 15 15 N 1.31517 * 120.00254 * 352.23582 * 14 12 11 16 16 Si 1.86805 * 120.00124 * 172.23056 * 14 12 11 17 17 H 1.48501 * 109.46909 * 90.00148 * 16 14 12 18 18 H 1.48493 * 109.47179 * 210.00245 * 16 14 12 19 19 H 1.48504 * 109.47035 * 330.00577 * 16 14 12 20 20 C 1.52999 * 117.49494 * 279.52383 * 11 10 7 21 21 C 1.52999 * 117.50100 * 210.86282 * 11 10 7 22 22 N 1.33771 * 106.49400 * 359.97438 * 4 3 2 23 23 N 1.28630 * 108.89088 * 0.02562 * 22 4 3 24 24 H 1.08999 * 109.47230 * 269.70841 * 1 2 3 25 25 H 1.08993 * 109.47218 * 29.71299 * 1 2 3 26 26 H 1.09007 * 109.46714 * 149.71531 * 1 2 3 27 27 H 1.08004 * 126.91642 * 0.23772 * 3 2 1 28 28 H 1.09007 * 109.46579 * 214.94368 * 5 4 3 29 29 H 1.08996 * 109.47102 * 334.94602 * 5 4 3 30 30 H 0.97001 * 119.99842 * 344.99085 * 6 5 4 31 31 H 1.08999 * 109.47373 * 293.80773 * 10 7 6 32 32 H 1.08996 * 109.47356 * 53.81158 * 10 7 6 33 33 H 0.96992 * 120.00335 * 185.02583 * 15 14 12 34 34 H 1.08997 * 117.50350 * 359.97438 * 20 11 10 35 35 H 1.09008 * 117.49955 * 145.02031 * 20 11 10 36 36 H 1.08996 * 117.50213 * 214.97364 * 21 11 10 37 37 H 1.09001 * 117.49346 * 359.97438 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2577 1.0965 0.0000 4 6 3.5321 0.6405 -0.0061 5 6 4.7879 1.4737 -0.0081 6 7 5.2658 1.6399 1.3668 7 16 6.8048 2.1825 1.6485 8 8 6.9188 2.1931 3.0649 9 8 7.6253 1.3373 0.8538 10 6 6.8145 3.8752 0.9964 11 6 8.1472 4.5453 1.3368 12 6 9.3636 3.9422 0.6829 13 1 9.9531 3.2081 1.2120 14 6 9.7240 4.3278 -0.5908 15 7 8.9272 5.1030 -1.2935 16 14 11.3443 3.7492 -1.3185 17 1 11.1349 2.4651 -2.0344 18 1 11.8518 4.7696 -2.2705 19 1 12.3342 3.5529 -0.2291 20 6 8.3121 5.1133 2.7479 21 6 8.1408 6.0594 1.5567 22 7 3.4575 -0.6951 -0.0089 23 7 2.2192 -1.0431 -0.0054 24 1 -0.3633 -0.0052 1.0276 25 1 -0.3633 0.8925 -0.5093 26 1 -0.3633 -0.8875 -0.5183 27 1 1.9380 2.1282 0.0036 28 1 5.5542 0.9743 -0.6011 29 1 4.5745 2.4516 -0.4393 30 1 4.6807 1.4323 2.1121 31 1 6.6873 3.8484 -0.0858 32 1 5.9981 4.4417 1.4443 33 1 9.1450 5.3148 -2.2146 34 1 7.4711 5.0101 3.4335 35 1 9.3006 5.0513 3.2031 36 1 9.0166 6.6193 1.2288 37 1 7.1872 6.5781 1.4584 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329659745.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:38 Heat of formation + Delta-G solvation = 55.660182 kcal Electronic energy + Delta-G solvation = -22345.419839 eV Core-core repulsion = 18867.551998 eV Total energy + Delta-G solvation = -3477.867841 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -43.43718 -36.74265 -36.27332 -35.80248 -35.01247 -34.37457 -32.02197 -31.13500 -28.32593 -28.14855 -26.06060 -25.42791 -22.26381 -21.51580 -21.20282 -19.72360 -18.65545 -17.69074 -16.96739 -16.68493 -16.42456 -15.78076 -15.16955 -14.97760 -14.68236 -14.34262 -14.09432 -13.81231 -13.54050 -13.42608 -13.13732 -12.77671 -11.95341 -11.91505 -11.80945 -11.36408 -11.22950 -11.09676 -10.98729 -10.96401 -10.90831 -10.54746 -10.43775 -10.29146 -10.09839 -9.72325 -9.47149 -9.21503 -8.93793 -8.54073 -8.07956 -6.12314 -4.22331 1.05093 1.38152 2.10665 2.32949 3.33736 3.39592 3.44736 3.59618 4.02011 4.28142 4.40122 4.55109 4.56230 4.66172 4.83807 4.86248 5.07846 5.16549 5.23369 5.26120 5.39735 5.66583 5.82493 5.95675 5.98155 6.11070 6.27262 6.30370 6.37902 6.61862 6.73441 6.99048 7.22612 7.29307 7.40156 7.82863 8.22306 8.33382 8.83343 9.48992 10.95377 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.004057 C = 0.003839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.140330 B = 6900.383937 C = 7290.974303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.298 5.298 3 C -0.036 4.036 4 C -0.023 4.023 5 C 0.203 3.797 6 N -1.129 6.129 7 S 2.607 3.393 8 O -0.973 6.973 9 O -0.946 6.946 10 C -0.555 4.555 11 C 0.044 3.956 12 C -0.516 4.516 13 H 0.069 0.931 14 C 0.083 3.917 15 N -0.876 5.876 16 Si 0.891 3.109 17 H -0.274 1.274 18 H -0.286 1.286 19 H -0.270 1.270 20 C -0.208 4.208 21 C -0.141 4.141 22 N -0.249 5.249 23 N -0.088 5.088 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.195 0.805 28 H 0.100 0.900 29 H 0.084 0.916 30 H 0.409 0.591 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.263 0.737 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.883 -2.834 0.888 19.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.091 5.091 3 C -0.188 4.188 4 C -0.163 4.163 5 C 0.075 3.925 6 N -0.885 5.885 7 S 2.704 3.296 8 O -0.963 6.963 9 O -0.935 6.935 10 C -0.688 4.688 11 C 0.041 3.959 12 C -0.553 4.553 13 H 0.087 0.913 14 C -0.122 4.122 15 N -0.511 5.511 16 Si 0.718 3.282 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.194 1.194 20 C -0.246 4.246 21 C -0.180 4.180 22 N -0.116 5.116 23 N -0.068 5.068 24 H 0.109 0.891 25 H 0.118 0.882 26 H 0.119 0.881 27 H 0.212 0.788 28 H 0.118 0.882 29 H 0.102 0.898 30 H 0.242 0.758 31 H 0.153 0.847 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.072 -4.746 0.960 18.710 hybrid contribution -0.253 1.439 -0.563 1.566 sum -18.325 -3.307 0.396 18.625 Atomic orbital electron populations 1.22267 0.72727 1.05925 1.05025 1.47286 1.09434 1.05006 1.47421 1.23493 0.90810 0.94889 1.09591 1.21980 0.95066 0.91542 1.07706 1.19395 0.91642 0.97414 0.84036 1.56029 1.35941 1.84404 1.12143 1.05190 0.71830 0.78117 0.74453 1.93507 1.84697 1.88157 1.29970 1.93547 1.64881 1.63840 1.71266 1.29996 1.05807 1.20135 1.12828 1.18276 0.90324 0.93762 0.93524 1.20534 1.09098 1.24898 1.00753 0.91319 1.24937 0.96948 0.93583 0.96742 1.69969 1.36884 1.35420 1.08835 0.86586 0.83816 0.78652 0.79183 1.19958 1.21127 1.19445 1.23201 1.01470 1.08153 0.91746 1.22551 1.00613 0.93950 1.00933 1.75147 1.09120 1.12112 1.15259 1.78359 0.96470 1.12094 1.19883 0.89058 0.88225 0.88055 0.78784 0.88155 0.89777 0.75846 0.84748 0.88192 0.92761 0.90679 0.89533 0.89608 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.29 11.39 59.85 0.68 0.97 16 2 N -0.30 -2.78 3.74 -68.05 -0.25 -3.03 16 3 C -0.04 -0.33 11.55 -17.05 -0.20 -0.53 16 4 C -0.02 -0.31 6.64 -82.77 -0.55 -0.86 16 5 C 0.20 2.78 6.69 -5.19 -0.03 2.75 16 6 N -1.13 -17.16 5.88 -11.65 -0.07 -17.23 16 7 S 2.61 52.53 5.19 -107.50 -0.56 51.97 16 8 O -0.97 -21.51 18.08 -57.54 -1.04 -22.55 16 9 O -0.95 -22.85 17.16 -57.54 -0.99 -23.83 16 10 C -0.55 -11.19 5.93 37.16 0.22 -10.97 16 11 C 0.04 1.04 1.32 -155.66 -0.21 0.84 16 12 C -0.52 -14.02 8.18 -34.44 -0.28 -14.30 16 13 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 14 C 0.08 2.24 5.38 -17.82 -0.10 2.14 16 15 N -0.88 -23.69 12.98 55.43 0.72 -22.97 16 16 Si 0.89 21.36 29.55 -169.99 -5.02 16.34 16 17 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 20 C -0.21 -4.53 9.96 -26.69 -0.27 -4.79 16 21 C -0.14 -3.16 9.49 -26.69 -0.25 -3.41 16 22 N -0.25 -3.92 12.41 33.29 0.41 -3.51 16 23 N -0.09 -1.20 13.17 60.35 0.79 -0.40 16 24 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 25 H 0.10 0.09 8.14 -51.93 -0.42 -0.33 16 26 H 0.10 0.29 8.14 -51.92 -0.42 -0.13 16 27 H 0.20 0.97 8.06 -52.48 -0.42 0.55 16 28 H 0.10 1.55 7.69 -51.93 -0.40 1.15 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.41 5.50 8.61 -34.47 -0.30 5.20 16 31 H 0.13 2.76 8.14 -51.92 -0.42 2.34 16 32 H 0.10 1.65 8.09 -51.93 -0.42 1.23 16 33 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.09 1.87 8.14 -51.92 -0.42 1.45 16 36 H 0.09 2.03 8.14 -51.93 -0.42 1.61 16 37 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -36.78 337.88 -6.78 -43.56 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -4.89 Total: 4.71 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: -0.98 Total: -28.16 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 1.60 Total: -47.14 kcal Atomic # 8 Polarization: -44.35 SS G_CDS: -2.03 Total: -46.38 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: 52.53 SS G_CDS: -0.56 Total: 51.97 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.78 -6.78 -43.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329659745.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.224 kcal (2) G-P(sol) polarization free energy of solvation -36.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds