Wall clock time and date at job start Tue Mar 31 2020 03:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48490 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46716 * 300.00150 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99848 * 3 2 1 7 7 C 1.37874 * 120.00144 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00812 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47289 * 179.97438 * 9 7 2 11 11 C 1.34774 * 120.00072 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00066 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.99838 * 180.02562 * 11 10 9 14 14 O 1.45198 * 109.47281 * 179.97438 * 13 11 10 15 15 C 1.34233 * 117.00143 * 179.97438 * 14 13 11 16 16 O 1.20822 * 120.00044 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99991 * 180.02562 * 15 14 13 18 18 H 1.09013 * 110.32866 * 305.80186 * 17 15 14 19 19 C 1.54479 * 110.37226 * 68.16680 * 17 15 14 20 20 C 1.54511 * 104.05908 * 142.81099 * 19 17 15 21 21 C 1.54480 * 104.06407 * 0.02562 * 20 19 17 22 22 H 1.08999 * 110.46365 * 94.90243 * 21 20 19 23 23 C 1.50697 * 110.37229 * 217.18810 * 21 20 19 24 24 N 1.34772 * 120.00565 * 291.83727 * 23 21 20 25 25 O 1.21291 * 119.99956 * 111.83453 * 23 21 20 26 26 O 1.44416 * 110.37537 * 183.55329 * 17 15 14 27 27 H 0.96997 * 119.99752 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47438 * 59.99575 * 9 7 2 29 29 H 1.09004 * 109.47113 * 299.99830 * 9 7 2 30 30 H 0.97001 * 119.99251 * 0.02562 * 10 9 7 31 31 H 1.09004 * 109.47043 * 299.99952 * 13 11 10 32 32 H 1.09001 * 109.47324 * 59.99585 * 13 11 10 33 33 H 1.09000 * 110.51517 * 261.45667 * 19 17 15 34 34 H 1.08999 * 110.50975 * 24.17177 * 19 17 15 35 35 H 1.08998 * 110.50977 * 241.35413 * 20 19 17 36 36 H 1.09003 * 110.51007 * 118.64956 * 20 19 17 37 37 H 0.97005 * 119.99687 * 359.97438 * 24 23 21 38 38 H 0.96992 * 120.00545 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 1.7538 -4.8834 0.0011 12 8 0.5613 -5.1050 0.0011 13 6 2.7330 -6.0288 0.0016 14 8 2.0071 -7.2863 0.0027 15 6 2.7382 -8.4120 0.0028 16 8 3.9447 -8.3488 0.0025 17 6 2.0540 -9.7548 0.0034 18 1 1.3495 -9.8205 0.8327 19 6 1.3296 -9.9898 -1.3406 20 6 1.5325 -11.4962 -1.6180 21 6 2.3549 -11.9932 -0.4084 22 1 1.6966 -12.4045 0.3568 23 6 3.3592 -13.0278 -0.8464 24 7 2.9401 -14.2341 -1.2771 25 8 4.5450 -12.7749 -0.8113 26 8 3.0297 -10.8162 0.0873 27 1 -0.4849 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 3.1567 -3.4354 0.0009 31 1 3.3598 -5.9714 -0.8884 32 1 3.3597 -5.9706 0.8916 33 1 0.2686 -9.7579 -1.2484 34 1 1.7851 -9.3915 -2.1297 35 1 2.0882 -11.6425 -2.5442 36 1 0.5717 -12.0091 -1.6629 37 1 1.9918 -14.4365 -1.3049 38 1 3.5865 -14.8998 -1.5594 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331502109.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:43 Heat of formation + Delta-G solvation = -234.370467 kcal Electronic energy + Delta-G solvation = -23526.335992 eV Core-core repulsion = 19560.845857 eV Total energy + Delta-G solvation = -3965.490135 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.125 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -42.10395 -41.15281 -40.37382 -39.29541 -37.57574 -36.18792 -34.88012 -34.42268 -33.27089 -31.69064 -30.54571 -28.53503 -26.19680 -24.59276 -23.23474 -22.09612 -21.67411 -21.61533 -19.46849 -19.13910 -18.48558 -18.21535 -18.08164 -17.71090 -17.27530 -17.06349 -16.86630 -16.32417 -16.10713 -15.95574 -15.53011 -15.14302 -14.85848 -14.65562 -14.50945 -14.14416 -13.92892 -13.67967 -13.28600 -12.92123 -12.85016 -12.76384 -12.73100 -12.23299 -12.01540 -11.99045 -11.67824 -11.47360 -11.27560 -10.92593 -10.83925 -10.83358 -10.71480 -9.93729 -8.30229 -6.46372 0.88725 0.94689 1.44456 1.44564 1.49948 1.53220 1.58346 2.11019 2.34119 2.51696 3.00508 3.05120 3.30803 3.54827 3.66588 3.71440 3.85748 3.94941 3.99458 4.01976 4.03487 4.30286 4.50392 4.83481 4.92469 4.95414 5.04068 5.12327 5.22214 5.41155 5.42484 5.62130 5.81921 5.86823 6.42807 6.48292 6.62586 6.76353 7.19366 7.30393 7.33843 8.81968 Molecular weight = 300.12amu Principal moments of inertia in cm(-1) A = 0.051172 B = 0.002173 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.045476 B =12882.770004 C =13234.882568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.984 3.016 4 H -0.255 1.255 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.699 5.699 11 C 0.503 3.497 12 O -0.579 6.579 13 C 0.058 3.942 14 O -0.335 6.335 15 C 0.463 3.537 16 O -0.521 6.521 17 C 0.084 3.916 18 H 0.149 0.851 19 C -0.140 4.140 20 C -0.131 4.131 21 C 0.047 3.953 22 H 0.146 0.854 23 C 0.517 3.483 24 N -0.823 5.823 25 O -0.588 6.588 26 O -0.362 6.362 27 H 0.269 0.731 28 H -0.005 1.005 29 H -0.005 1.005 30 H 0.412 0.588 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.144 0.856 37 H 0.424 0.576 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.090 -28.594 -2.956 28.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.178 1.178 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.351 5.351 11 C 0.289 3.711 12 O -0.459 6.459 13 C -0.019 4.019 14 O -0.250 6.250 15 C 0.306 3.694 16 O -0.409 6.409 17 C 0.026 3.974 18 H 0.166 0.834 19 C -0.177 4.177 20 C -0.168 4.168 21 C -0.013 4.013 22 H 0.163 0.837 23 C 0.301 3.699 24 N -0.390 5.390 25 O -0.467 6.467 26 O -0.280 6.280 27 H 0.078 0.922 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.248 0.752 31 H 0.139 0.861 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.162 0.838 37 H 0.256 0.744 38 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 1.379 -28.230 -2.796 28.402 hybrid contribution 0.584 0.926 -0.104 1.100 sum 1.963 -27.304 -2.900 27.527 Atomic orbital electron populations 1.70129 1.08138 1.28557 1.49868 1.26029 0.95801 1.03787 0.93878 0.85114 0.79034 0.77425 0.77668 1.17830 1.20471 1.20473 1.21644 0.94412 0.90483 1.52962 0.89736 1.18649 0.88525 0.83639 0.94763 1.46061 1.11770 1.04760 1.72492 1.20532 0.89191 0.84534 0.76867 1.90680 1.18600 1.85238 1.51393 1.22772 0.92831 0.79185 1.07065 1.86511 1.40722 1.14048 1.83761 1.23957 0.86296 0.87045 0.72069 1.90708 1.16857 1.87881 1.45413 1.22721 0.89549 0.81544 1.03607 0.83353 1.22985 1.03557 0.97551 0.93639 1.23004 1.02654 0.94465 0.96708 1.23350 0.92661 0.86156 0.99114 0.83660 1.20586 0.88721 0.84114 0.76473 1.43501 1.13861 1.14185 1.67419 1.90807 1.20227 1.80223 1.55443 1.89360 1.35867 1.17619 1.85192 0.92178 0.98734 0.98752 0.75193 0.86052 0.86018 0.85334 0.91361 0.90438 0.83828 0.74392 0.75591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 2 C 0.00 0.27 5.46 84.65 0.46 0.73 16 3 Si 0.98 41.90 29.54 68.60 2.03 43.92 16 4 H -0.25 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.56 -29.74 9.28 25.60 0.24 -29.51 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.06 16 9 C 0.27 14.25 5.43 85.63 0.46 14.72 16 10 N -0.70 -28.77 5.55 -466.77 -2.59 -31.36 16 11 C 0.50 19.92 7.91 87.66 0.69 20.61 16 12 O -0.58 -28.22 16.50 15.76 0.26 -27.96 16 13 C 0.06 1.72 5.94 71.23 0.42 2.14 16 14 O -0.33 -10.05 9.75 -45.09 -0.44 -10.49 16 15 C 0.46 12.98 7.20 71.24 0.51 13.49 16 16 O -0.52 -18.18 16.30 28.22 0.46 -17.72 16 17 C 0.08 1.61 3.82 30.35 0.12 1.73 16 18 H 0.15 1.84 8.14 -2.38 -0.02 1.82 16 19 C -0.14 -1.77 6.62 31.61 0.21 -1.56 16 20 C -0.13 -0.92 6.62 31.61 0.21 -0.71 16 21 C 0.05 0.58 3.71 30.35 0.11 0.69 16 22 H 0.15 0.53 8.14 -2.39 -0.02 0.51 16 23 C 0.52 8.60 7.34 87.66 0.64 9.24 16 24 N -0.82 -4.10 8.87 -173.53 -1.54 -5.64 16 25 O -0.59 -18.01 17.39 15.30 0.27 -17.75 16 26 O -0.36 -8.69 10.17 -121.26 -1.23 -9.92 16 27 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 28 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 29 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 30 H 0.41 13.82 8.32 -92.71 -0.77 13.05 16 31 H 0.12 3.07 8.13 -2.38 -0.02 3.05 16 32 H 0.12 3.09 8.13 -2.39 -0.02 3.07 16 33 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.13 7.86 -2.39 -0.02 1.11 16 35 H 0.08 0.70 7.87 -2.39 -0.02 0.68 16 36 H 0.14 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.42 -1.52 8.83 -92.70 -0.82 -2.34 16 38 H 0.41 1.75 8.93 -92.71 -0.83 0.92 16 Total: -1.00 -91.73 340.86 0.30 -91.44 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -1.28 Total: 8.62 kcal Atomic # 6 Polarization: 27.49 SS G_CDS: 4.08 Total: 31.58 kcal Atomic # 7 Polarization: -87.87 SS G_CDS: -3.84 Total: -91.71 kcal Atomic # 8 Polarization: -83.16 SS G_CDS: -0.69 Total: -83.84 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -91.73 0.30 -91.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331502109.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.933 kcal (2) G-P(sol) polarization free energy of solvation -91.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -234.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds