Wall clock time and date at job start Tue Mar 31 2020 03:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99594 * 2 1 3 5 5 N 1.46900 * 109.47228 * 175.00420 * 4 2 1 6 6 C 1.46899 * 111.00145 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46956 * 179.97438 * 6 5 4 8 8 C 1.40896 * 125.30693 * 94.72068 * 7 6 5 9 9 N 1.29950 * 109.38907 * 179.80334 * 8 7 6 10 10 O 1.41874 * 107.41881 * 0.43489 * 9 8 7 11 11 N 1.29952 * 125.29974 * 275.01692 * 7 6 5 12 12 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 13 13 C 1.34777 * 120.00199 * 85.00207 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 2 16 16 S 1.80999 * 109.46903 * 179.72354 * 15 13 12 17 17 C 1.76200 * 99.99730 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99941 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00384 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46990 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47522 * 119.99735 * 21 19 17 24 24 H 1.48500 * 109.47073 * 240.00101 * 21 19 17 25 25 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 26 26 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 27 27 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47321 * 295.00347 * 4 2 1 29 29 H 1.09000 * 109.47575 * 55.00163 * 4 2 1 30 30 H 1.00898 * 111.00402 * 56.04454 * 5 4 2 31 31 H 1.08998 * 109.46808 * 299.99348 * 6 5 4 32 32 H 1.08998 * 109.47335 * 59.99460 * 6 5 4 33 33 H 1.08004 * 125.30256 * 359.97438 * 8 7 6 34 34 H 0.97000 * 119.99484 * 264.99304 * 12 2 1 35 35 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 36 36 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 37 37 H 0.97002 * 120.00288 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.8265 1.1905 6 6 4.0302 -1.5156 2.3763 7 6 5.5316 -1.6051 2.2803 8 6 6.4400 -0.6935 2.8538 9 7 7.6548 -1.0675 2.5839 10 8 7.5719 -2.2498 1.8040 11 7 6.1899 -2.5322 1.6511 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6435 -0.7303 -3.5891 16 16 2.6982 0.4311 -4.9762 17 6 3.2960 -0.6356 -6.2449 18 1 3.5060 -1.6719 -6.0247 19 6 3.4959 -0.1444 -7.5276 20 7 3.2385 1.1182 -7.7964 21 14 4.1289 -1.2754 -8.8728 22 1 4.3383 -2.6365 -8.3172 23 1 3.1360 -1.3376 -9.9752 24 1 5.4163 -0.7511 -9.3952 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -0.1582 2.1370 29 1 1.6054 -1.7197 1.2953 30 1 3.9280 0.0827 1.0825 31 1 3.7557 -0.9585 3.2720 32 1 3.6094 -2.5197 2.4297 33 1 6.1689 0.1786 3.4303 34 1 2.2491 -1.6318 -1.1525 35 1 3.6436 -1.1225 -3.4039 36 1 1.9697 -1.5525 -3.8299 37 1 3.3785 1.4616 -8.6927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001669511155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:02 Heat of formation + Delta-G solvation = 56.151991 kcal Electronic energy + Delta-G solvation = -21046.414277 eV Core-core repulsion = 17568.567763 eV Total energy + Delta-G solvation = -3477.846514 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.77588 -39.41729 -37.37550 -35.14001 -33.41180 -32.86862 -32.39032 -31.28470 -28.51054 -27.86403 -25.44821 -24.70488 -23.71953 -21.81833 -21.27495 -20.22424 -17.86796 -17.59544 -16.91271 -16.47128 -16.35613 -15.46353 -15.39703 -15.27992 -14.77014 -14.71225 -14.50042 -13.98579 -13.87482 -13.25440 -13.11577 -12.80480 -12.55404 -12.46065 -12.16898 -12.14307 -11.99372 -11.72477 -11.56020 -11.25786 -11.04287 -11.02274 -10.97561 -10.71527 -9.76229 -9.34488 -9.05857 -9.03996 -8.81490 -8.18778 -6.45403 -6.18323 -3.88071 0.14358 1.53517 2.25839 2.74504 3.08443 3.17197 3.24630 3.31213 3.35676 3.39711 3.69142 3.84173 4.24388 4.26101 4.37489 4.55987 4.73630 4.86584 5.01547 5.05172 5.10947 5.17040 5.18259 5.28153 5.33938 5.53791 5.70535 5.94607 5.97279 6.06709 6.22737 6.30709 6.49405 6.66978 6.79391 7.64007 7.83340 8.39489 8.70546 9.27485 10.89176 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003230 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.841820 B = 8665.658996 C =10298.188980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.086 0.914 4 C 0.053 3.947 5 N -0.681 5.681 6 C 0.125 3.875 7 C 0.068 3.932 8 C 0.051 3.949 9 N -0.271 5.271 10 O 0.027 5.973 11 N -0.245 5.245 12 N -0.722 5.722 13 C 0.534 3.466 14 O -0.524 6.524 15 C -0.152 4.152 16 S -0.062 6.062 17 C -0.533 4.533 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.868 5.868 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.083 0.917 30 H 0.351 0.649 31 H 0.068 0.932 32 H 0.103 0.897 33 H 0.212 0.788 34 H 0.401 0.599 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -5.020 26.003 26.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.040 3.960 3 H 0.104 0.896 4 C -0.076 4.076 5 N -0.314 5.314 6 C -0.005 4.005 7 C -0.116 4.116 8 C -0.152 4.152 9 N -0.013 5.013 10 O -0.116 6.116 11 N 0.011 4.989 12 N -0.376 5.376 13 C 0.321 3.679 14 O -0.399 6.399 15 C -0.303 4.303 16 S 0.164 5.836 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.504 5.504 21 Si 0.744 3.256 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.102 0.898 30 H 0.170 0.830 31 H 0.086 0.914 32 H 0.121 0.879 33 H 0.228 0.772 34 H 0.236 0.764 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.103 -4.262 24.869 25.255 hybrid contribution 0.209 -1.351 0.184 1.380 sum -0.894 -5.613 25.053 25.690 Atomic orbital electron populations 1.22157 0.94902 1.02255 1.02879 1.20828 0.93943 0.97394 0.83863 0.89593 1.22343 0.86560 1.01627 0.97047 1.60306 1.06051 1.26812 1.38226 1.20510 0.84295 1.02433 0.93245 1.24585 0.99696 0.92096 0.95173 1.26088 0.88939 1.01137 0.99076 1.79935 1.19649 0.97016 1.04748 1.93454 1.18944 1.36054 1.63164 1.80021 0.88709 1.17840 1.12290 1.45875 1.68768 1.14107 1.08815 1.20265 0.76662 0.87156 0.83864 1.90686 1.48716 1.15849 1.84603 1.23517 1.03746 1.04707 0.98335 1.85336 1.86449 1.13142 0.98639 1.22921 1.50854 0.98199 0.96200 0.90901 1.24988 0.95116 0.95538 0.97963 1.70032 1.45763 1.13282 1.21318 0.86125 0.78496 0.80216 0.80724 1.19592 1.20593 1.20579 0.91959 0.91239 0.92385 0.93155 0.89834 0.83034 0.91415 0.87880 0.77174 0.76443 0.89265 0.89399 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.48 37.16 0.35 -1.14 16 2 C 0.15 1.40 2.81 -67.93 -0.19 1.21 16 3 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 4 C 0.05 0.30 5.24 -3.83 -0.02 0.28 16 5 N -0.68 -4.39 6.21 -115.06 -0.71 -5.11 16 6 C 0.13 0.56 6.23 -4.97 -0.03 0.53 16 7 C 0.07 0.50 6.70 -82.38 -0.55 -0.06 16 8 C 0.05 0.32 11.90 -17.34 -0.21 0.11 16 9 N -0.27 -2.77 12.98 30.70 0.40 -2.37 16 10 O 0.03 0.34 13.71 12.02 0.16 0.50 16 11 N -0.25 -2.74 12.98 33.74 0.44 -2.30 16 12 N -0.72 -9.04 4.80 -53.81 -0.26 -9.30 16 13 C 0.53 9.74 7.81 -10.98 -0.09 9.65 16 14 O -0.52 -11.51 15.53 5.55 0.09 -11.42 16 15 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 16 S -0.06 -1.71 20.57 -107.50 -2.21 -3.92 16 17 C -0.53 -15.46 9.50 30.94 0.29 -15.16 16 18 H 0.07 2.02 7.80 -52.49 -0.41 1.61 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 20 N -0.87 -26.47 13.22 55.49 0.73 -25.73 16 21 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.35 2.34 8.72 -39.29 -0.34 2.00 16 31 H 0.07 0.10 8.14 -51.93 -0.42 -0.33 16 32 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.21 0.27 8.06 -52.48 -0.42 -0.15 16 34 H 0.40 4.33 8.60 -40.82 -0.35 3.98 16 35 H 0.09 1.75 8.14 -51.91 -0.42 1.33 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 344.57 15.07 5.19 5.19 Total: -1.00 -37.13 344.57 -6.37 -43.50 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.86 Total: -0.34 kcal Atomic # 6 Polarization: -5.15 SS G_CDS: -0.31 Total: -5.47 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: 0.60 Total: -44.81 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.25 Total: -10.92 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.71 SS G_CDS: -2.21 Total: -3.92 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -37.13 -6.37 -43.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669511155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.655 kcal (2) G-P(sol) polarization free energy of solvation -37.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds