Wall clock time and date at job start Tue Mar 31 2020 03:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46641 * 2 1 4 4 C 1.52995 * 109.47023 * 119.99594 * 2 1 3 5 5 N 1.46900 * 109.47228 * 175.00420 * 4 2 1 6 6 C 1.46899 * 111.00145 * 180.02562 * 5 4 2 7 7 C 1.50705 * 109.46956 * 179.97438 * 6 5 4 8 8 C 1.40896 * 125.30693 * 94.72068 * 7 6 5 9 9 N 1.29950 * 109.38907 * 179.80334 * 8 7 6 10 10 O 1.41874 * 107.41881 * 0.43489 * 9 8 7 11 11 N 1.29952 * 125.29974 * 275.01692 * 7 6 5 12 12 N 1.46499 * 109.47070 * 239.99909 * 2 1 3 13 13 C 1.34777 * 120.00199 * 85.00207 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 2 16 16 S 1.80999 * 109.46903 * 179.72354 * 15 13 12 17 17 C 1.76200 * 99.99730 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00351 * 0.02562 * 17 16 15 19 19 C 1.38796 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31634 * 119.99941 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00384 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46990 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47522 * 119.99735 * 21 19 17 24 24 H 1.48500 * 109.47073 * 240.00101 * 21 19 17 25 25 H 1.08998 * 109.47598 * 300.00373 * 1 2 3 26 26 H 1.09005 * 109.47473 * 60.00264 * 1 2 3 27 27 H 1.08998 * 109.46925 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47321 * 295.00347 * 4 2 1 29 29 H 1.09000 * 109.47575 * 55.00163 * 4 2 1 30 30 H 1.00898 * 111.00402 * 56.04454 * 5 4 2 31 31 H 1.08998 * 109.46808 * 299.99348 * 6 5 4 32 32 H 1.08998 * 109.47335 * 59.99460 * 6 5 4 33 33 H 1.08004 * 125.30256 * 359.97438 * 8 7 6 34 34 H 0.97000 * 119.99484 * 264.99304 * 12 2 1 35 35 H 1.09004 * 109.46965 * 299.72211 * 15 13 12 36 36 H 1.08994 * 109.46990 * 59.72065 * 15 13 12 37 37 H 0.97002 * 120.00288 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 3.5040 -0.8265 1.1905 6 6 4.0302 -1.5156 2.3763 7 6 5.5316 -1.6051 2.2803 8 6 6.4400 -0.6935 2.8538 9 7 7.6548 -1.0675 2.5839 10 8 7.5719 -2.2498 1.8040 11 7 6.1899 -2.5322 1.6511 12 7 2.0183 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6435 -0.7303 -3.5891 16 16 2.6982 0.4311 -4.9762 17 6 3.2960 -0.6356 -6.2449 18 1 3.5060 -1.6719 -6.0247 19 6 3.4959 -0.1444 -7.5276 20 7 3.2385 1.1182 -7.7964 21 14 4.1289 -1.2754 -8.8728 22 1 4.3383 -2.6365 -8.3172 23 1 3.1360 -1.3376 -9.9752 24 1 5.4163 -0.7511 -9.3952 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7516 -0.1582 2.1370 29 1 1.6054 -1.7197 1.2953 30 1 3.9280 0.0827 1.0825 31 1 3.7557 -0.9585 3.2720 32 1 3.6094 -2.5197 2.4297 33 1 6.1689 0.1786 3.4303 34 1 2.2491 -1.6318 -1.1525 35 1 3.6436 -1.1225 -3.4039 36 1 1.9697 -1.5525 -3.8299 37 1 3.3785 1.4616 -8.6927 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001669511155.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:01 Heat of formation + Delta-G solvation = 25.129622 kcal Electronic energy + Delta-G solvation = -21047.759508 eV Core-core repulsion = 17568.567763 eV Total energy + Delta-G solvation = -3479.191745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 300.104 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.38534 -40.68024 -38.11486 -35.99790 -34.59167 -34.12470 -33.59079 -32.38801 -29.93494 -28.40826 -27.66090 -25.31531 -24.24653 -22.61165 -21.94076 -21.41764 -19.83030 -18.23556 -17.85249 -17.62061 -17.06627 -16.88908 -16.38437 -16.35937 -15.95780 -15.77426 -15.63933 -14.99273 -14.69079 -14.55637 -14.40456 -13.87402 -13.69286 -13.22571 -13.16299 -12.95706 -12.91671 -12.86140 -12.76327 -12.56665 -12.52810 -12.25196 -11.98658 -11.75870 -11.67170 -11.16294 -10.84633 -10.27478 -9.97518 -9.44568 -8.65742 -8.35563 -6.12774 -0.47486 1.03663 1.28190 1.40123 1.47281 1.56193 1.59296 1.71619 2.16823 2.26389 2.40705 2.89298 2.98391 3.26876 3.35125 3.82275 3.87511 4.08441 4.14540 4.22583 4.33091 4.43630 4.47644 4.53224 4.61511 4.70112 4.72936 4.82071 4.84767 5.13800 5.34618 5.41308 5.64959 5.87003 5.91241 6.19339 6.27677 6.64401 7.06019 7.37299 8.73892 Molecular weight = 300.10amu Principal moments of inertia in cm(-1) A = 0.013113 B = 0.003230 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.841820 B = 8665.658996 C =10298.188980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.140 3.860 3 H 0.066 0.934 4 C 0.067 3.933 5 N -0.704 5.704 6 C 0.129 3.871 7 C 0.085 3.915 8 C 0.077 3.923 9 N -0.306 5.306 10 O -0.031 6.031 11 N -0.287 5.287 12 N -0.695 5.695 13 C 0.536 3.464 14 O -0.568 6.568 15 C -0.130 4.130 16 S -0.148 6.148 17 C -0.548 4.548 18 H 0.079 0.921 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.998 3.002 22 H -0.259 1.259 23 H -0.271 1.271 24 H -0.274 1.274 25 H 0.090 0.910 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.099 0.901 30 H 0.349 0.651 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.265 0.735 34 H 0.413 0.587 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.660 -6.251 28.348 29.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 H 0.084 0.916 4 C -0.061 4.061 5 N -0.337 5.337 6 C 0.000 4.000 7 C -0.099 4.099 8 C -0.126 4.126 9 N -0.053 5.053 10 O -0.163 6.163 11 N -0.034 5.034 12 N -0.348 5.348 13 C 0.321 3.679 14 O -0.447 6.447 15 C -0.282 4.282 16 S 0.079 5.921 17 C -0.695 4.695 18 H 0.097 0.903 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.199 1.199 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.091 0.909 28 H 0.103 0.897 29 H 0.117 0.883 30 H 0.167 0.833 31 H 0.132 0.868 32 H 0.126 0.874 33 H 0.280 0.720 34 H 0.250 0.750 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.994 -5.572 27.246 27.881 hybrid contribution 0.365 -0.917 -0.356 1.049 sum -1.629 -6.489 26.890 27.710 Atomic orbital electron populations 1.22106 0.94258 1.03028 1.02320 1.21116 0.94447 0.96811 0.84072 0.91574 1.22251 0.86019 1.02346 0.95529 1.60241 1.06559 1.27000 1.39924 1.20732 0.81748 1.03307 0.94202 1.25247 1.01183 0.90682 0.92818 1.26955 0.87367 1.01291 0.96998 1.79901 1.21963 0.97154 1.06285 1.93425 1.20181 1.37753 1.64966 1.79977 0.88517 1.20168 1.14707 1.45691 1.66661 1.14449 1.08014 1.19885 0.76762 0.86528 0.84728 1.90673 1.51098 1.17621 1.85318 1.23373 1.05020 1.03173 0.96614 1.85454 1.86784 1.17364 1.02460 1.23238 1.51042 0.98411 0.96855 0.90302 1.26104 0.95029 0.97231 1.00687 1.70184 1.46870 1.15455 1.22166 0.84925 0.77928 0.78164 0.77055 1.18296 1.19662 1.19894 0.89124 0.95227 0.90891 0.89749 0.88318 0.83260 0.86780 0.87382 0.71990 0.75020 0.88233 0.87760 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.48 71.98 0.68 -1.85 16 2 C 0.14 2.36 2.81 44.99 0.13 2.48 16 3 H 0.07 1.43 7.58 -2.38 -0.02 1.41 16 4 C 0.07 0.45 5.24 86.30 0.45 0.91 16 5 N -0.70 -6.41 6.21 -517.94 -3.22 -9.63 16 6 C 0.13 0.57 6.23 85.56 0.53 1.10 16 7 C 0.09 1.03 6.70 43.49 0.29 1.32 16 8 C 0.08 0.75 11.90 85.62 1.02 1.77 16 9 N -0.31 -6.14 12.98 -56.80 -0.74 -6.88 16 10 O -0.03 -0.82 13.71 70.16 0.96 0.14 16 11 N -0.29 -6.33 12.98 -47.15 -0.61 -6.95 16 12 N -0.70 -16.26 4.80 -442.53 -2.12 -18.38 16 13 C 0.54 19.50 7.81 87.66 0.68 20.19 16 14 O -0.57 -25.69 15.53 -3.04 -0.05 -25.73 16 15 C -0.13 -5.36 6.16 71.24 0.44 -4.92 16 16 S -0.15 -8.38 20.57 -56.49 -1.16 -9.54 16 17 C -0.55 -32.17 9.50 67.95 0.65 -31.53 16 18 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 19 C 0.01 0.83 5.49 84.86 0.47 1.29 16 20 N -0.91 -56.71 13.22 21.65 0.29 -56.42 16 21 Si 1.00 44.74 29.55 68.60 2.03 46.77 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 24 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 25 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.03 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.10 8.14 -2.39 -0.02 0.08 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.35 3.50 8.72 -89.70 -0.78 2.71 16 31 H 0.11 -0.45 8.14 -2.39 -0.02 -0.47 16 32 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.26 -0.67 8.06 -2.91 -0.02 -0.70 16 34 H 0.41 7.86 8.60 -92.71 -0.80 7.06 16 35 H 0.10 3.86 8.14 -2.39 -0.02 3.84 16 36 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 37 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 Total: -1.00 -88.12 344.57 0.25 -87.88 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -0.47 Total: 7.97 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 5.34 Total: -9.23 kcal Atomic # 7 Polarization: -91.85 SS G_CDS: -6.41 Total: -98.26 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: 0.91 Total: -25.59 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.16 Total: -9.54 kcal Total: -88.12 0.25 -87.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001669511155.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.009 kcal (2) G-P(sol) polarization free energy of solvation -88.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds