Wall clock time and date at job start Tue Mar 31 2020 04:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48501 * 109.46876 * 272.02643 * 3 2 1 5 5 H 1.48494 * 109.47244 * 32.02726 * 3 2 1 6 6 H 1.48504 * 109.46935 * 152.03069 * 3 2 1 7 7 C 1.38816 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00229 * 336.91465 * 7 2 1 9 9 N 1.36942 * 119.99599 * 156.90962 * 7 2 1 10 10 C 1.46499 * 120.00062 * 320.84824 * 9 7 2 11 11 C 1.50702 * 109.46800 * 269.99603 * 10 9 7 12 12 C 1.38360 * 119.85187 * 90.00134 * 11 10 9 13 13 C 1.37957 * 120.14449 * 179.97438 * 12 11 10 14 14 C 1.39575 * 119.85145 * 359.97438 * 13 12 11 15 15 C 1.47850 * 120.14059 * 179.97438 * 14 13 12 16 16 O 1.21552 * 120.00144 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99748 * 180.02562 * 15 14 13 18 18 C 1.46501 * 120.00132 * 179.97438 * 17 15 14 19 19 C 1.52995 * 117.49941 * 223.74782 * 18 17 15 20 20 C 1.53004 * 117.50101 * 155.08372 * 18 17 15 21 21 C 1.39570 * 119.71249 * 0.25530 * 14 13 12 22 22 C 1.37953 * 119.85563 * 359.50866 * 21 14 13 23 23 C 1.46498 * 119.99639 * 140.84446 * 9 7 2 24 24 C 1.53000 * 117.49934 * 4.02355 * 23 9 7 25 25 C 1.52997 * 59.99969 * 252.50627 * 24 23 9 26 26 H 0.97007 * 119.99719 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47204 * 150.00051 * 10 9 7 28 28 H 1.08992 * 109.47156 * 29.99685 * 10 9 7 29 29 H 1.08002 * 119.92907 * 359.97438 * 12 11 10 30 30 H 1.07999 * 120.07551 * 180.02562 * 13 12 11 31 31 H 0.97000 * 120.00118 * 359.97438 * 17 15 14 32 32 H 1.08998 * 115.55021 * 9.41895 * 18 17 15 33 33 H 1.08999 * 117.50237 * 359.97438 * 19 18 17 34 34 H 1.09004 * 117.49820 * 145.02013 * 19 18 17 35 35 H 1.08997 * 117.49897 * 214.97572 * 20 18 17 36 36 H 1.08995 * 117.49293 * 359.97438 * 20 18 17 37 37 H 1.08004 * 120.07306 * 179.72546 * 21 14 13 38 38 H 1.07997 * 119.93471 * 180.23200 * 22 21 14 39 39 H 1.09000 * 115.54903 * 149.73152 * 23 9 7 40 40 H 1.08997 * 117.49975 * 359.97438 * 24 23 9 41 41 H 1.09003 * 117.49880 * 145.02463 * 24 23 9 42 42 H 1.08999 * 117.50817 * 252.50891 * 25 24 23 43 43 H 1.09008 * 117.51826 * 107.47631 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4548 2.0711 -1.3992 5 1 1.4699 2.6399 0.7425 6 1 3.5686 1.4280 0.6567 7 6 2.0101 -1.2022 0.0005 8 1 1.5350 -2.0999 0.3677 9 7 3.2973 -1.2500 -0.4646 10 6 3.6796 -0.4688 -1.6435 11 6 3.4676 -1.2966 -2.8848 12 6 2.2491 -1.2572 -3.5391 13 6 2.0486 -2.0121 -4.6763 14 6 3.0785 -2.8164 -5.1668 15 6 2.8705 -3.6284 -6.3847 16 8 1.8006 -3.5969 -6.9608 17 7 3.8668 -4.4045 -6.8555 18 6 3.6605 -5.2096 -8.0619 19 6 4.1718 -6.6515 -8.0449 20 6 4.8980 -5.5913 -8.8767 21 6 4.3036 -2.8552 -4.4992 22 6 4.4927 -2.0917 -3.3659 23 6 4.2919 -2.0822 0.2169 24 6 3.8099 -2.9463 1.3838 25 6 4.6640 -1.7057 1.6524 26 1 -0.4850 0.8401 -0.0004 27 1 4.7303 -0.1887 -1.5687 28 1 3.0667 0.4308 -1.6976 29 1 1.4532 -0.6341 -3.1588 30 1 1.0972 -1.9801 -5.1864 31 1 4.7204 -4.4299 -6.3955 32 1 2.7398 -5.0085 -8.6096 33 1 4.6620 -7.0010 -7.1363 34 1 3.5876 -7.3990 -8.5817 35 1 4.7913 -5.6417 -9.9603 36 1 5.8655 -5.2429 -8.5153 37 1 5.1031 -3.4789 -4.8711 38 1 5.4414 -2.1179 -2.8505 39 1 5.0802 -2.4871 -0.4176 40 1 2.7528 -2.8954 1.6448 41 1 4.2811 -3.9202 1.5172 42 1 5.6970 -1.8632 1.9624 43 1 4.1690 -0.8385 2.0896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025186473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:18 Heat of formation + Delta-G solvation = 71.053714 kcal Electronic energy + Delta-G solvation = -23714.153057 eV Core-core repulsion = 20340.882217 eV Total energy + Delta-G solvation = -3373.270840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.12528 -38.58517 -37.28412 -36.85972 -33.91812 -33.04122 -31.88796 -30.51436 -30.08206 -26.24814 -24.21777 -22.93550 -22.69890 -22.34694 -21.57457 -21.31156 -20.27136 -19.71870 -17.87096 -16.84007 -16.64538 -15.58846 -15.48060 -15.04810 -14.93131 -14.80694 -14.64779 -14.19622 -13.77233 -13.41782 -13.21194 -12.84141 -12.75913 -12.50307 -12.11287 -11.97728 -11.88461 -11.76335 -11.50735 -10.93961 -10.86933 -10.79469 -10.74269 -10.45197 -10.10262 -10.01231 -9.82123 -9.60915 -9.50529 -8.95429 -8.62949 -8.57629 -8.33132 -6.85123 -6.13611 -3.55660 1.16020 1.78495 2.96205 2.96828 3.20403 3.38819 3.43852 3.65593 4.18241 4.39591 4.48332 4.66171 4.69371 4.74030 4.78741 4.89593 5.04309 5.15984 5.24372 5.30219 5.48055 5.54456 5.65275 5.71528 5.75085 5.76999 5.82858 5.91220 5.97601 6.07387 6.21451 6.33333 6.37060 6.39215 6.41187 6.50739 6.60144 6.79223 6.85981 7.05801 7.14877 7.32049 7.42058 7.91475 8.21136 8.29741 8.84140 9.55686 9.95189 11.00376 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.003611 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.442149 B = 7751.813905 C = 8454.136467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.044 3.956 3 Si 0.867 3.133 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.265 1.265 7 C -0.271 4.271 8 H 0.083 0.917 9 N -0.562 5.562 10 C 0.162 3.838 11 C -0.047 4.047 12 C -0.100 4.100 13 C -0.057 4.057 14 C -0.160 4.160 15 C 0.569 3.431 16 O -0.540 6.540 17 N -0.705 5.705 18 C 0.083 3.917 19 C -0.195 4.195 20 C -0.191 4.191 21 C -0.092 4.092 22 C -0.127 4.127 23 C 0.120 3.880 24 C -0.187 4.187 25 C -0.221 4.221 26 H 0.266 0.734 27 H 0.055 0.945 28 H 0.070 0.930 29 H 0.134 0.866 30 H 0.129 0.871 31 H 0.401 0.599 32 H 0.138 0.862 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.447 -7.731 -11.768 18.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.159 4.159 3 Si 0.696 3.304 4 H -0.209 1.209 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.399 4.399 8 H 0.100 0.900 9 N -0.280 5.280 10 C 0.037 3.963 11 C -0.050 4.050 12 C -0.119 4.119 13 C -0.076 4.076 14 C -0.163 4.163 15 C 0.359 3.641 16 O -0.418 6.418 17 N -0.355 5.355 18 C -0.023 4.023 19 C -0.234 4.234 20 C -0.230 4.230 21 C -0.111 4.111 22 C -0.145 4.145 23 C 0.012 3.988 24 C -0.226 4.226 25 C -0.262 4.262 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.152 0.848 30 H 0.147 0.853 31 H 0.237 0.763 32 H 0.155 0.845 33 H 0.115 0.885 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.132 0.868 38 H 0.138 0.862 39 H 0.109 0.891 40 H 0.121 0.879 41 H 0.095 0.905 42 H 0.092 0.908 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.466 -7.577 -12.142 18.339 hybrid contribution 0.849 0.762 0.384 1.204 sum 12.316 -6.815 -11.758 18.341 Atomic orbital electron populations 1.69879 1.06015 1.27044 1.49688 1.25491 0.95014 0.97684 0.97661 0.87133 0.81007 0.84757 0.77505 1.20878 1.22603 1.18935 1.18717 0.86506 0.94573 1.40106 0.89979 1.43621 1.07410 1.52248 1.24708 1.20434 0.98853 0.93493 0.83534 1.21173 0.92981 0.96196 0.94681 1.21191 0.97456 0.99316 0.93962 1.21227 0.97882 0.93308 0.95154 1.19606 0.96393 1.02962 0.97381 1.18436 0.83222 0.78475 0.83941 1.90737 1.25558 1.65811 1.59691 1.45310 1.16543 1.45703 1.27972 1.21573 0.99196 0.92314 0.89233 1.23444 1.04405 0.92966 1.02563 1.23388 0.96897 1.03632 0.99053 1.21037 0.95494 0.98635 0.95888 1.20895 0.99271 0.97925 0.96450 1.21133 0.93920 0.97194 0.86564 1.23066 1.01165 0.93468 1.04866 1.23374 0.98423 0.99640 1.04743 0.92408 0.92696 0.91249 0.84845 0.85262 0.76339 0.84456 0.88458 0.87990 0.87905 0.88496 0.86782 0.86161 0.89090 0.87855 0.90483 0.90752 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.59 13.97 55.49 0.78 -24.82 16 2 C 0.04 1.18 5.28 -17.43 -0.09 1.09 16 3 Si 0.87 20.79 25.31 -169.99 -4.30 16.49 16 4 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 5 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.26 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.27 -7.06 8.93 -15.06 -0.13 -7.19 16 8 H 0.08 2.36 6.86 -52.49 -0.36 2.00 16 9 N -0.56 -12.45 2.36 -167.03 -0.39 -12.85 16 10 C 0.16 3.25 4.68 -5.19 -0.02 3.23 16 11 C -0.05 -0.86 5.47 -104.53 -0.57 -1.43 16 12 C -0.10 -1.93 9.68 -39.64 -0.38 -2.31 16 13 C -0.06 -1.01 9.60 -39.19 -0.38 -1.38 16 14 C -0.16 -2.52 5.87 -104.97 -0.62 -3.14 16 15 C 0.57 8.75 7.77 -12.33 -0.10 8.65 16 16 O -0.54 -10.05 15.91 5.32 0.08 -9.96 16 17 N -0.70 -8.02 5.52 -54.75 -0.30 -8.32 16 18 C 0.08 0.83 6.43 -67.93 -0.44 0.40 16 19 C -0.20 -1.51 10.46 -26.69 -0.28 -1.79 16 20 C -0.19 -1.37 10.46 -26.69 -0.28 -1.65 16 21 C -0.09 -1.25 9.54 -39.19 -0.37 -1.62 16 22 C -0.13 -1.92 9.68 -39.64 -0.38 -2.30 16 23 C 0.12 2.29 6.57 -67.93 -0.45 1.85 16 24 C -0.19 -3.46 9.80 -26.73 -0.26 -3.72 16 25 C -0.22 -4.02 10.34 -26.73 -0.28 -4.30 16 26 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 27 H 0.05 0.97 8.01 -51.93 -0.42 0.55 16 28 H 0.07 1.53 3.39 -51.93 -0.18 1.35 16 29 H 0.13 2.79 8.06 -52.49 -0.42 2.37 16 30 H 0.13 2.27 7.65 -52.49 -0.40 1.86 16 31 H 0.40 3.55 6.86 -40.82 -0.28 3.27 16 32 H 0.14 1.56 7.40 -51.93 -0.38 1.18 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.11 1.12 6.41 -52.48 -0.34 0.78 16 38 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.10 2.17 6.44 -51.93 -0.33 1.84 16 41 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.85 8.14 -51.92 -0.42 1.42 16 LS Contribution 356.95 15.07 5.38 5.38 Total: -1.00 -30.48 356.95 -9.88 -40.35 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -6.08 Total: 9.35 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -5.03 Total: -15.63 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.08 Total: -45.98 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.08 Total: -9.96 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.30 Total: 16.49 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.48 -9.88 -40.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025186473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.407 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds