Wall clock time and date at job start Tue Mar 31 2020 04:15:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 120.00237 * 2 1 4 4 H 1.48501 * 109.46876 * 272.02643 * 3 2 1 5 5 H 1.48494 * 109.47244 * 32.02726 * 3 2 1 6 6 H 1.48504 * 109.46935 * 152.03069 * 3 2 1 7 7 C 1.38816 * 119.99488 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00229 * 336.91465 * 7 2 1 9 9 N 1.36942 * 119.99599 * 156.90962 * 7 2 1 10 10 C 1.46499 * 120.00062 * 320.84824 * 9 7 2 11 11 C 1.50702 * 109.46800 * 269.99603 * 10 9 7 12 12 C 1.38360 * 119.85187 * 90.00134 * 11 10 9 13 13 C 1.37957 * 120.14449 * 179.97438 * 12 11 10 14 14 C 1.39575 * 119.85145 * 359.97438 * 13 12 11 15 15 C 1.47850 * 120.14059 * 179.97438 * 14 13 12 16 16 O 1.21552 * 120.00144 * 359.97438 * 15 14 13 17 17 N 1.34779 * 119.99748 * 180.02562 * 15 14 13 18 18 C 1.46501 * 120.00132 * 179.97438 * 17 15 14 19 19 C 1.52995 * 117.49941 * 223.74782 * 18 17 15 20 20 C 1.53004 * 117.50101 * 155.08372 * 18 17 15 21 21 C 1.39570 * 119.71249 * 0.25530 * 14 13 12 22 22 C 1.37953 * 119.85563 * 359.50866 * 21 14 13 23 23 C 1.46498 * 119.99639 * 140.84446 * 9 7 2 24 24 C 1.53000 * 117.49934 * 4.02355 * 23 9 7 25 25 C 1.52997 * 59.99969 * 252.50627 * 24 23 9 26 26 H 0.97007 * 119.99719 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47204 * 150.00051 * 10 9 7 28 28 H 1.08992 * 109.47156 * 29.99685 * 10 9 7 29 29 H 1.08002 * 119.92907 * 359.97438 * 12 11 10 30 30 H 1.07999 * 120.07551 * 180.02562 * 13 12 11 31 31 H 0.97000 * 120.00118 * 359.97438 * 17 15 14 32 32 H 1.08998 * 115.55021 * 9.41895 * 18 17 15 33 33 H 1.08999 * 117.50237 * 359.97438 * 19 18 17 34 34 H 1.09004 * 117.49820 * 145.02013 * 19 18 17 35 35 H 1.08997 * 117.49897 * 214.97572 * 20 18 17 36 36 H 1.08995 * 117.49293 * 359.97438 * 20 18 17 37 37 H 1.08004 * 120.07306 * 179.72546 * 21 14 13 38 38 H 1.07997 * 119.93471 * 180.23200 * 22 21 14 39 39 H 1.09000 * 115.54903 * 149.73152 * 23 9 7 40 40 H 1.08997 * 117.49975 * 359.97438 * 24 23 9 41 41 H 1.09003 * 117.49880 * 145.02463 * 24 23 9 42 42 H 1.08999 * 117.50817 * 252.50891 * 25 24 23 43 43 H 1.09008 * 117.51826 * 107.47631 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4548 2.0711 -1.3992 5 1 1.4699 2.6399 0.7425 6 1 3.5686 1.4280 0.6567 7 6 2.0101 -1.2022 0.0005 8 1 1.5350 -2.0999 0.3677 9 7 3.2973 -1.2500 -0.4646 10 6 3.6796 -0.4688 -1.6435 11 6 3.4676 -1.2966 -2.8848 12 6 2.2491 -1.2572 -3.5391 13 6 2.0486 -2.0121 -4.6763 14 6 3.0785 -2.8164 -5.1668 15 6 2.8705 -3.6284 -6.3847 16 8 1.8006 -3.5969 -6.9608 17 7 3.8668 -4.4045 -6.8555 18 6 3.6605 -5.2096 -8.0619 19 6 4.1718 -6.6515 -8.0449 20 6 4.8980 -5.5913 -8.8767 21 6 4.3036 -2.8552 -4.4992 22 6 4.4927 -2.0917 -3.3659 23 6 4.2919 -2.0822 0.2169 24 6 3.8099 -2.9463 1.3838 25 6 4.6640 -1.7057 1.6524 26 1 -0.4850 0.8401 -0.0004 27 1 4.7303 -0.1887 -1.5687 28 1 3.0667 0.4308 -1.6976 29 1 1.4532 -0.6341 -3.1588 30 1 1.0972 -1.9801 -5.1864 31 1 4.7204 -4.4299 -6.3955 32 1 2.7398 -5.0085 -8.6096 33 1 4.6620 -7.0010 -7.1363 34 1 3.5876 -7.3990 -8.5817 35 1 4.7913 -5.6417 -9.9603 36 1 5.8655 -5.2429 -8.5153 37 1 5.1031 -3.4789 -4.8711 38 1 5.4414 -2.1179 -2.8505 39 1 5.0802 -2.4871 -0.4176 40 1 2.7528 -2.8954 1.6448 41 1 4.2811 -3.9202 1.5172 42 1 5.6970 -1.8632 1.9624 43 1 4.1690 -0.8385 2.0896 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025186473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:17 Heat of formation + Delta-G solvation = 52.904713 kcal Electronic energy + Delta-G solvation = -23714.940057 eV Core-core repulsion = 20340.882217 eV Total energy + Delta-G solvation = -3374.057840 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.30138 -39.86622 -38.60659 -37.94092 -35.48806 -34.25365 -33.59994 -31.83735 -31.55902 -27.82771 -25.93793 -24.15694 -23.61511 -23.25311 -22.99605 -22.36194 -21.50145 -21.36818 -19.05078 -18.52540 -17.74471 -17.24625 -17.06703 -16.32203 -16.14522 -15.98870 -15.80105 -15.44791 -15.24839 -14.71491 -14.52586 -14.38577 -14.31939 -13.76190 -13.60039 -13.43429 -13.19699 -12.68281 -12.51042 -12.43922 -12.34907 -12.24785 -12.03663 -11.81034 -11.69207 -11.47835 -11.32731 -11.08309 -10.94893 -10.62227 -9.93925 -9.88240 -9.58455 -8.64107 -8.22243 -5.60672 -0.13042 0.49187 1.27559 1.39660 1.49907 1.76711 1.99989 2.38853 2.77845 3.01533 3.08266 3.34484 3.36828 3.65052 3.78675 3.87299 4.02528 4.07789 4.09441 4.09848 4.30481 4.33232 4.41775 4.49431 4.54151 4.68351 4.78376 4.79150 4.86295 4.92731 4.97266 5.03749 5.04165 5.12100 5.22846 5.29897 5.34488 5.43548 5.49817 5.56847 5.76828 5.92474 5.99957 6.21769 6.45353 6.97501 7.13065 7.60745 8.00801 8.96579 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.003611 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.442149 B = 7751.813905 C = 8454.136467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.011 4.011 3 Si 0.928 3.072 4 H -0.269 1.269 5 H -0.312 1.312 6 H -0.252 1.252 7 C -0.249 4.249 8 H 0.040 0.960 9 N -0.576 5.576 10 C 0.160 3.840 11 C -0.062 4.062 12 C -0.124 4.124 13 C -0.074 4.074 14 C -0.159 4.159 15 C 0.566 3.434 16 O -0.585 6.585 17 N -0.682 5.682 18 C 0.045 3.955 19 C -0.184 4.184 20 C -0.166 4.166 21 C -0.070 4.070 22 C -0.114 4.114 23 C 0.109 3.891 24 C -0.192 4.192 25 C -0.209 4.209 26 H 0.262 0.738 27 H 0.091 0.909 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.416 0.584 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.167 0.833 38 H 0.161 0.839 39 H 0.133 0.867 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.114 0.886 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.006 -9.544 -13.043 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.208 4.208 3 Si 0.756 3.244 4 H -0.196 1.196 5 H -0.241 1.241 6 H -0.176 1.176 7 C -0.379 4.379 8 H 0.058 0.942 9 N -0.295 5.295 10 C 0.035 3.965 11 C -0.065 4.065 12 C -0.143 4.143 13 C -0.093 4.093 14 C -0.163 4.163 15 C 0.355 3.645 16 O -0.466 6.466 17 N -0.333 5.333 18 C -0.061 4.061 19 C -0.223 4.223 20 C -0.204 4.204 21 C -0.089 4.089 22 C -0.133 4.133 23 C 0.002 3.998 24 C -0.230 4.230 25 C -0.250 4.250 26 H 0.071 0.929 27 H 0.109 0.891 28 H 0.060 0.940 29 H 0.114 0.886 30 H 0.132 0.868 31 H 0.255 0.745 32 H 0.132 0.868 33 H 0.125 0.875 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.184 0.816 38 H 0.178 0.822 39 H 0.151 0.849 40 H 0.081 0.919 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 17.120 -9.424 -13.436 23.716 hybrid contribution -0.828 1.138 0.673 1.560 sum 16.292 -8.286 -12.763 22.293 Atomic orbital electron populations 1.70012 1.07773 1.27392 1.53316 1.26029 0.95433 1.00835 0.98482 0.86127 0.79783 0.80607 0.77846 1.19629 1.24071 1.17602 1.18465 0.88223 0.92836 1.38396 0.94234 1.43704 1.06532 1.52985 1.26236 1.20447 1.00092 0.92503 0.83426 1.21068 0.93496 0.97256 0.94705 1.20972 0.97639 1.00325 0.95340 1.21133 0.98513 0.94561 0.95138 1.19780 0.96746 1.02107 0.97662 1.18415 0.83443 0.78928 0.83701 1.90722 1.27533 1.67411 1.60910 1.45106 1.16004 1.44224 1.27988 1.21679 1.00404 0.94354 0.89639 1.23531 1.03823 0.91739 1.03159 1.23498 0.95929 1.01439 0.99524 1.21509 0.95344 0.97636 0.94366 1.21252 0.99495 0.96060 0.96444 1.21535 0.94101 0.96876 0.87308 1.23034 0.99413 0.95496 1.05064 1.23354 0.99989 0.98027 1.03598 0.92880 0.89105 0.93959 0.88570 0.86778 0.74480 0.86765 0.87497 0.87299 0.86731 0.86774 0.81576 0.82190 0.84943 0.91869 0.87024 0.86766 0.92339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.24 13.97 21.65 0.30 -57.94 16 2 C -0.01 -0.60 5.28 84.86 0.45 -0.15 16 3 Si 0.93 44.66 25.31 68.60 1.74 46.39 16 4 H -0.27 -12.28 6.52 99.48 0.65 -11.63 16 5 H -0.31 -15.53 7.11 99.48 0.71 -14.82 16 6 H -0.25 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.25 -13.58 8.93 84.03 0.75 -12.83 16 8 H 0.04 2.46 6.86 -2.91 -0.02 2.44 16 9 N -0.58 -25.09 2.36 -682.36 -1.61 -26.70 16 10 C 0.16 6.16 4.68 85.63 0.40 6.56 16 11 C -0.06 -2.20 5.47 -19.80 -0.11 -2.31 16 12 C -0.12 -4.98 9.68 22.23 0.22 -4.76 16 13 C -0.07 -2.75 9.60 22.53 0.22 -2.53 16 14 C -0.16 -4.80 5.87 -20.09 -0.12 -4.92 16 15 C 0.57 16.77 7.77 86.79 0.67 17.45 16 16 O -0.58 -22.32 15.91 -3.88 -0.06 -22.38 16 17 N -0.68 -13.51 5.52 -445.40 -2.46 -15.97 16 18 C 0.04 0.80 6.43 44.99 0.29 1.09 16 19 C -0.18 -2.21 10.46 30.62 0.32 -1.89 16 20 C -0.17 -1.71 10.46 30.62 0.32 -1.39 16 21 C -0.07 -1.58 9.54 22.52 0.21 -1.37 16 22 C -0.11 -2.92 9.68 22.23 0.22 -2.70 16 23 C 0.11 3.81 6.57 44.99 0.30 4.10 16 24 C -0.19 -6.77 9.80 30.59 0.30 -6.47 16 25 C -0.21 -7.02 10.34 30.59 0.32 -6.70 16 26 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 27 H 0.09 2.83 8.01 -2.39 -0.02 2.81 16 28 H 0.04 1.86 3.39 -2.39 -0.01 1.85 16 29 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.11 4.42 7.65 -2.91 -0.02 4.40 16 31 H 0.42 5.27 6.86 -92.71 -0.64 4.63 16 32 H 0.11 2.59 7.40 -2.39 -0.02 2.57 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 35 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.17 2.03 6.41 -2.91 -0.02 2.01 16 38 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 39 H 0.13 3.57 8.14 -2.39 -0.02 3.55 16 40 H 0.06 2.75 6.44 -2.39 -0.02 2.73 16 41 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 43 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 Total: -1.00 -74.23 356.95 2.99 -71.24 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: 0.33 Total: 24.19 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 4.75 Total: -18.83 kcal Atomic # 7 Polarization: -96.84 SS G_CDS: -3.77 Total: -100.61 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.06 Total: -22.38 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.74 Total: 46.39 kcal Total: -74.23 2.99 -71.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025186473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.143 kcal (2) G-P(sol) polarization free energy of solvation -74.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds