Wall clock time and date at job start Tue Mar 31 2020 04:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47339 * 2 1 4 4 C 1.53002 * 109.47606 * 239.99470 * 2 1 3 5 5 O 1.45210 * 109.46899 * 119.99620 * 2 1 3 6 6 C 1.34231 * 116.99643 * 60.00054 * 5 2 1 7 7 O 1.20828 * 119.99887 * 359.97438 * 6 5 2 8 8 C 1.50696 * 119.99553 * 179.97438 * 6 5 2 9 9 C 1.53005 * 109.47150 * 179.97438 * 8 6 5 10 10 H 1.09005 * 109.55603 * 305.22088 * 9 8 6 11 11 C 1.53252 * 109.56065 * 185.00184 * 9 8 6 12 12 C 1.53259 * 108.84442 * 185.64111 * 11 9 8 13 13 H 1.09000 * 109.56093 * 174.36570 * 12 11 9 14 14 C 1.50697 * 109.55963 * 294.57794 * 12 11 9 15 15 H 1.08000 * 119.99901 * 359.97438 * 14 12 11 16 16 C 1.37880 * 120.00266 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99989 * 359.97438 * 16 14 12 18 18 Si 1.86796 * 119.99958 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47351 * 59.99737 * 18 16 14 20 20 H 1.48502 * 109.47248 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47212 * 299.99764 * 18 16 14 22 22 O 1.43089 * 108.94400 * 54.52209 * 12 11 9 23 23 C 1.42965 * 113.77437 * 302.02966 * 22 12 11 24 24 C 1.52996 * 109.47539 * 178.79388 * 23 22 12 25 25 C 1.53000 * 109.47031 * 298.79967 * 23 22 12 26 26 O 1.42973 * 109.46626 * 58.79436 * 23 22 12 27 27 H 1.08995 * 109.47353 * 300.00920 * 1 2 3 28 28 H 1.09003 * 109.46480 * 60.00067 * 1 2 3 29 29 H 1.08998 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46666 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.46912 * 299.99378 * 3 2 1 32 32 H 1.09003 * 109.47094 * 59.99543 * 3 2 1 33 33 H 1.08996 * 109.46839 * 300.00581 * 4 2 1 34 34 H 1.09003 * 109.46269 * 60.00147 * 4 2 1 35 35 H 1.08997 * 109.47269 * 180.02562 * 4 2 1 36 36 H 1.09006 * 109.47114 * 60.00441 * 8 6 5 37 37 H 1.08993 * 109.47460 * 300.00263 * 8 6 5 38 38 H 1.08998 * 109.57724 * 305.44503 * 11 9 8 39 39 H 1.09000 * 109.57910 * 65.83172 * 11 9 8 40 40 H 0.96991 * 119.99913 * 180.02562 * 17 16 14 41 41 H 1.08997 * 109.47298 * 60.00359 * 24 23 22 42 42 H 1.09000 * 109.46986 * 180.02562 * 24 23 22 43 43 H 1.08999 * 109.46859 * 300.00101 * 24 23 22 44 44 H 1.08995 * 109.47636 * 75.21136 * 25 23 22 45 45 H 1.09004 * 109.46990 * 195.21605 * 25 23 22 46 46 H 1.09000 * 109.47151 * 315.20770 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2492 5 8 2.0140 -0.6845 1.1857 6 6 1.6532 -1.9684 1.3380 7 8 0.9558 -2.5024 0.5084 8 6 2.1181 -2.7436 2.5438 9 6 1.5704 -4.1706 2.4749 10 1 0.4862 -4.1405 2.3663 11 6 1.9368 -4.9233 3.7586 12 6 1.5057 -6.3869 3.6144 13 1 1.8496 -6.9555 4.4784 14 6 0.0034 -6.4640 3.5252 15 1 -0.5871 -5.5607 3.5674 16 6 -0.6175 -7.6878 3.3908 17 7 0.1015 -8.7878 3.3399 18 14 -2.4797 -7.7831 3.2795 19 1 -2.9451 -7.0130 2.0982 20 1 -2.8952 -9.2019 3.1399 21 1 -3.0792 -7.2101 4.5114 22 8 2.0867 -6.9271 2.4235 23 6 1.7333 -6.2147 1.2354 24 6 2.4281 -6.8539 0.0316 25 6 0.2170 -6.2715 1.0387 26 8 2.1473 -4.8516 1.3563 27 1 -0.3634 0.5139 0.8898 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6768 -0.2075 -2.1391 35 1 3.1301 -0.7217 -1.2489 36 1 1.7546 -2.2587 3.4498 37 1 3.2076 -2.7725 2.5593 38 1 3.0142 -4.8738 3.9161 39 1 1.4208 -4.4725 4.6063 40 1 -0.3352 -9.6486 3.2450 41 1 2.1125 -7.8931 -0.0606 42 1 2.1590 -6.3103 -0.8741 43 1 3.5083 -6.8133 0.1718 44 1 -0.2663 -5.5928 1.7413 45 1 -0.0284 -5.9743 0.0191 46 1 -0.1344 -7.2881 1.2153 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034441190.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:39 Heat of formation + Delta-G solvation = -196.202880 kcal Electronic energy + Delta-G solvation = -27191.880733 eV Core-core repulsion = 23467.419106 eV Total energy + Delta-G solvation = -3724.461627 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.182 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.86575 -40.96642 -38.07009 -36.42356 -35.28225 -34.92491 -34.18084 -31.66953 -30.76528 -28.42913 -28.35808 -28.25993 -27.08120 -24.85504 -23.00876 -22.26352 -20.68363 -20.46765 -18.66754 -18.11656 -18.01841 -17.45882 -17.07675 -16.79675 -16.41295 -15.77913 -15.53040 -15.35018 -15.15060 -14.64058 -14.44155 -14.22762 -14.01885 -13.69021 -13.38441 -13.26040 -13.21459 -13.10088 -13.00208 -12.88930 -12.85691 -12.81569 -12.67335 -12.47835 -12.35434 -12.28398 -12.10078 -12.04770 -11.78915 -11.55215 -11.33120 -11.19673 -10.89220 -10.47451 -10.23906 -9.89821 -8.10779 -6.19793 1.35177 1.36691 1.39390 1.44276 1.75086 2.38013 2.82731 3.07552 3.54507 3.69708 3.80357 3.82593 3.84682 3.99217 4.21802 4.28838 4.29803 4.38376 4.54183 4.60550 4.61376 4.63927 4.73231 4.77686 4.83599 4.83938 4.90409 4.91026 4.96094 5.03634 5.04728 5.07791 5.14912 5.17064 5.28791 5.34989 5.37558 5.57589 5.63343 5.70576 5.79274 6.10602 6.38442 6.71541 6.96145 7.06117 7.44278 8.94007 Molecular weight = 300.18amu Principal moments of inertia in cm(-1) A = 0.020817 B = 0.004580 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.717522 B = 6111.942766 C = 6422.461290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 C -0.133 4.133 4 C -0.180 4.180 5 O -0.357 6.357 6 C 0.463 3.537 7 O -0.514 6.514 8 C -0.102 4.102 9 C 0.109 3.891 10 H 0.052 0.948 11 C -0.161 4.161 12 C 0.201 3.799 13 H 0.037 0.963 14 C -0.553 4.553 15 H 0.058 0.942 16 C 0.044 3.956 17 N -0.891 5.891 18 Si 0.925 3.075 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.266 1.266 22 O -0.401 6.401 23 C 0.277 3.723 24 C -0.117 4.117 25 C -0.167 4.167 26 O -0.398 6.398 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.144 0.856 37 H 0.125 0.875 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.260 0.740 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.077 0.923 45 H 0.030 0.970 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.883 18.171 -5.492 19.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.070 3.930 3 C -0.190 4.190 4 C -0.237 4.237 5 O -0.275 6.275 6 C 0.306 3.694 7 O -0.402 6.402 8 C -0.139 4.139 9 C 0.051 3.949 10 H 0.070 0.930 11 C -0.199 4.199 12 C 0.145 3.855 13 H 0.055 0.945 14 C -0.590 4.590 15 H 0.076 0.924 16 C -0.159 4.159 17 N -0.528 5.528 18 Si 0.750 3.250 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.191 1.191 22 O -0.322 6.322 23 C 0.200 3.800 24 C -0.174 4.174 25 C -0.225 4.225 26 O -0.320 6.320 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.162 0.838 37 H 0.143 0.857 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.048 0.952 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.913 17.766 -5.913 19.129 hybrid contribution -1.567 -0.733 0.123 1.735 sum 2.346 17.033 -5.790 18.142 Atomic orbital electron populations 1.22452 0.94294 1.03253 1.03737 1.22460 0.94446 0.93544 0.82582 1.21853 1.02385 0.90601 1.04191 1.22443 1.01702 1.01890 0.97658 1.86537 1.70127 1.24992 1.45855 1.23772 0.77220 0.80587 0.87780 1.90615 1.35809 1.70063 1.43701 1.21590 1.04966 0.91662 0.95712 1.21748 0.96995 0.90029 0.86097 0.93013 1.22673 1.01268 0.97970 0.97991 1.19737 0.92138 0.89343 0.84293 0.94522 1.21532 0.92490 0.92690 1.52336 0.92383 1.25486 1.00765 0.95558 0.94055 1.70145 1.36420 0.98095 1.48176 0.86147 0.82472 0.77208 0.79146 1.19691 1.21057 1.19125 1.88056 1.72212 1.55846 1.16103 1.22347 0.92520 0.77843 0.87301 1.21511 1.00779 1.00319 0.94765 1.22943 0.97504 1.03067 0.98946 1.87929 1.70622 1.25230 1.48195 0.91546 0.89233 0.92713 0.91161 0.88405 0.91020 0.92691 0.89236 0.91833 0.83786 0.85746 0.91259 0.89417 0.93070 0.91365 0.90252 0.91503 0.90430 0.95154 0.92870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.95 8.37 71.98 0.60 -3.35 16 2 C 0.11 2.29 1.13 -10.79 -0.01 2.28 16 3 C -0.13 -1.91 8.85 71.98 0.64 -1.27 16 4 C -0.18 -4.06 8.37 71.98 0.60 -3.46 16 5 O -0.36 -9.32 9.89 -51.42 -0.51 -9.83 16 6 C 0.46 14.23 7.15 71.23 0.51 14.74 16 7 O -0.51 -19.04 10.95 26.88 0.29 -18.75 16 8 C -0.10 -2.87 5.53 29.85 0.17 -2.70 16 9 C 0.11 4.14 1.82 30.68 0.06 4.20 16 10 H 0.05 2.23 5.35 -2.38 -0.01 2.21 16 11 C -0.16 -6.30 5.07 30.77 0.16 -6.14 16 12 C 0.20 10.06 3.18 29.93 0.10 10.15 16 13 H 0.04 2.01 8.14 -2.39 -0.02 2.00 16 14 C -0.55 -28.87 4.80 25.60 0.12 -28.74 16 15 H 0.06 2.98 6.62 -2.91 -0.02 2.96 16 16 C 0.04 2.37 3.30 84.66 0.28 2.65 16 17 N -0.89 -51.29 12.82 21.45 0.28 -51.02 16 18 Si 0.92 42.65 29.38 68.60 2.02 44.66 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 22 O -0.40 -20.99 9.69 -126.22 -1.22 -22.21 16 23 C 0.28 12.80 1.50 30.59 0.05 12.85 16 24 C -0.12 -4.62 9.16 71.98 0.66 -3.96 16 25 C -0.17 -8.06 7.13 71.98 0.51 -7.54 16 26 O -0.40 -17.07 9.27 -120.91 -1.12 -18.19 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.58 5.89 -2.39 -0.01 1.56 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.05 1.64 5.89 -2.39 -0.01 1.62 16 34 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.14 3.07 8.14 -2.38 -0.02 3.05 16 37 H 0.12 3.08 8.14 -2.39 -0.02 3.06 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 41 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 42 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 43 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 44 H 0.08 3.88 3.50 -2.39 -0.01 3.87 16 45 H 0.03 1.34 8.05 -2.38 -0.02 1.32 16 46 H 0.05 2.79 5.91 -2.39 -0.01 2.78 16 Total: -1.00 -65.90 350.31 5.12 -60.78 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: 0.96 Total: 24.86 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: 4.43 Total: -10.31 kcal Atomic # 7 Polarization: -51.29 SS G_CDS: 0.28 Total: -51.02 kcal Atomic # 8 Polarization: -66.42 SS G_CDS: -2.56 Total: -68.98 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.02 Total: 44.66 kcal Total: -65.90 5.12 -60.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034441190.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -135.423 kcal (2) G-P(sol) polarization free energy of solvation -65.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds