Wall clock time and date at job start Tue Mar 31 2020 03:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00352 * 2 1 4 4 H 1.48495 * 109.46889 * 269.99871 * 3 2 1 5 5 H 1.48510 * 109.46825 * 29.99632 * 3 2 1 6 6 H 1.48494 * 109.47200 * 149.99504 * 3 2 1 7 7 C 1.37875 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00401 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00012 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00136 * 269.99493 * 10 9 7 12 12 C 1.52996 * 109.47198 * 270.00278 * 11 10 9 13 13 N 1.46902 * 109.46980 * 179.97438 * 12 11 10 14 14 C 1.47015 * 111.00009 * 293.63325 * 13 12 11 15 15 C 1.53099 * 109.25823 * 177.60981 * 14 13 12 16 16 O 1.43011 * 109.25882 * 56.84675 * 15 14 13 17 17 C 1.43015 * 113.74031 * 301.33175 * 16 15 14 18 18 C 1.47013 * 110.99990 * 170.00210 * 13 12 11 19 19 C 1.34784 * 119.99971 * 89.99688 * 10 9 7 20 20 O 1.21274 * 119.99897 * 359.72827 * 19 10 9 21 21 C 1.50695 * 119.99635 * 179.97438 * 19 10 9 22 22 C 1.50707 * 109.47011 * 180.02562 * 21 19 10 23 23 O 1.20829 * 119.99769 * 359.97438 * 22 21 19 24 24 O 1.34227 * 119.99922 * 180.02562 * 22 21 19 25 25 H 0.97008 * 119.99482 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47074 * 59.99766 * 9 7 2 27 27 H 1.09008 * 109.46468 * 299.99737 * 9 7 2 28 28 H 1.08997 * 109.46865 * 30.00228 * 11 10 9 29 29 H 1.08998 * 109.47058 * 149.99741 * 11 10 9 30 30 H 1.08997 * 109.47172 * 299.99762 * 12 11 10 31 31 H 1.08998 * 109.47554 * 59.99767 * 12 11 10 32 32 H 1.09006 * 109.50603 * 297.54506 * 14 13 12 33 33 H 1.09003 * 109.50663 * 57.67164 * 14 13 12 34 34 H 1.09000 * 109.50174 * 296.90829 * 15 14 13 35 35 H 1.08998 * 109.54067 * 176.80673 * 15 14 13 36 36 H 1.08996 * 109.50161 * 298.73506 * 17 16 15 37 37 H 1.09002 * 109.54009 * 178.62878 * 17 16 15 38 38 H 1.08999 * 109.50620 * 302.32609 * 18 13 12 39 39 H 1.08999 * 109.51226 * 62.41126 * 18 13 12 40 40 H 1.09005 * 109.47403 * 300.00056 * 21 19 10 41 41 H 1.09002 * 109.47422 * 60.00295 * 21 19 10 42 42 H 0.96703 * 116.99391 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2435 -3.2663 1.2696 12 6 5.6883 -3.0260 1.7118 13 7 5.9325 -3.7183 2.9843 14 6 5.1383 -3.1231 4.0688 15 6 5.3770 -3.9102 5.3601 16 8 6.7762 -3.9186 5.6555 17 6 7.5797 -4.4920 4.6207 18 6 7.3633 -3.7108 3.3220 19 6 4.2248 -3.2105 -1.1663 20 8 4.0183 -2.6403 -2.2165 21 6 4.7276 -4.6311 -1.1664 22 6 4.8960 -5.1044 -2.5873 23 8 4.6341 -4.3641 -3.5056 24 8 5.3359 -6.3485 -2.8326 25 1 -0.4850 0.8402 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8751 -0.6805 -0.8890 28 1 3.5625 -2.8823 2.0291 29 1 4.0765 -4.3354 1.1390 30 1 6.3694 -3.4100 0.9524 31 1 5.8554 -1.9568 1.8424 32 1 5.4399 -2.0857 4.2138 33 1 4.0804 -3.1622 3.8089 34 1 5.0257 -4.9341 5.2324 35 1 4.8347 -3.4389 6.1798 36 1 7.2925 -5.5329 4.4716 37 1 8.6308 -4.4416 4.9051 38 1 7.9298 -4.1790 2.5170 39 1 7.7008 -2.6829 3.4543 40 1 5.6877 -4.6768 -0.6524 41 1 4.0097 -5.2707 -0.6527 42 1 5.4276 -6.6068 -3.7600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050917527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:59 Heat of formation + Delta-G solvation = -150.688840 kcal Electronic energy + Delta-G solvation = -25330.235782 eV Core-core repulsion = 21504.207449 eV Total energy + Delta-G solvation = -3826.028333 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36292 -39.73169 -38.76655 -36.48617 -35.82303 -34.68526 -32.71369 -31.38669 -30.94451 -29.79894 -27.74802 -26.00278 -24.19751 -23.20308 -22.35629 -21.43226 -20.49716 -18.43063 -18.00837 -17.08441 -16.70402 -16.66103 -16.28936 -16.04293 -15.86809 -15.42076 -15.22634 -14.93101 -14.81953 -14.31210 -14.00688 -13.77972 -13.37098 -12.99691 -12.69126 -12.57784 -12.42707 -12.29022 -11.93862 -11.68156 -11.57362 -11.53868 -11.31528 -10.96158 -10.91375 -10.67067 -10.54883 -10.28348 -10.20768 -9.86715 -9.57328 -8.99752 -8.62312 -8.58253 -7.82325 -6.11824 -4.10934 2.40502 2.88775 3.20363 3.26397 3.31811 3.34982 3.46590 3.69828 3.98557 4.36405 4.63920 4.73903 4.81467 4.84811 4.96725 5.04272 5.15765 5.16510 5.20856 5.25567 5.35231 5.36089 5.44505 5.52173 5.57781 5.60645 5.70601 5.79260 5.89470 6.11123 6.57873 6.62189 6.76297 6.78028 6.88082 6.95222 7.24197 7.56302 8.06862 8.09852 8.42701 8.85985 8.92760 9.48102 11.01478 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.008717 B = 0.005776 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.189853 B = 4846.142592 C = 7486.745057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.219 3.781 10 N -0.592 5.592 11 C 0.114 3.886 12 C 0.035 3.965 13 N -0.533 5.533 14 C 0.010 3.990 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.017 3.983 19 C 0.506 3.494 20 O -0.495 6.495 21 C -0.136 4.136 22 C 0.473 3.527 23 O -0.466 6.466 24 O -0.526 6.526 25 H 0.265 0.735 26 H 0.029 0.971 27 H 0.037 0.963 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.096 0.904 34 H 0.060 0.940 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.042 0.958 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.368 -12.424 8.269 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.099 3.901 10 N -0.325 5.325 11 C -0.011 4.011 12 C -0.094 4.094 13 N -0.259 5.259 14 C -0.118 4.118 15 C -0.012 4.012 16 O -0.307 6.307 17 C -0.012 4.012 18 C -0.111 4.111 19 C 0.290 3.710 20 O -0.368 6.368 21 C -0.176 4.176 22 C 0.311 3.689 23 O -0.349 6.349 24 O -0.339 6.339 25 H 0.075 0.925 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.061 0.939 40 H 0.143 0.857 41 H 0.147 0.853 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 14.882 -12.025 7.938 20.714 hybrid contribution 0.502 1.449 -0.693 1.683 sum 15.384 -10.576 7.245 20.025 Atomic orbital electron populations 1.69895 1.06176 1.27006 1.50314 1.24842 0.94745 0.98885 0.94408 0.86878 0.80082 0.83928 0.78941 1.19841 1.21031 1.19203 1.21303 0.89080 0.94879 1.51541 0.90637 1.19668 0.95803 0.77324 0.97342 1.47818 1.64787 1.15992 1.03880 1.21435 0.94596 0.97775 0.87285 1.22657 0.98685 0.97344 0.90705 1.62182 1.06402 1.54600 1.02702 1.22916 1.00032 0.97159 0.91674 1.22688 0.81968 1.00216 0.96377 1.87975 1.17920 1.82595 1.42231 1.22639 0.95536 0.96578 0.86463 1.22782 0.89511 1.00137 0.98701 1.19637 0.79797 0.86943 0.84649 1.90847 1.49371 1.66534 1.30074 1.21294 1.06000 0.97796 0.92537 1.22792 0.74462 0.79251 0.92360 1.90893 1.43421 1.54487 1.46062 1.84498 1.79904 1.33315 1.36164 0.92520 0.95325 0.94485 0.89448 0.90260 0.90705 0.93842 0.93651 0.88581 0.92134 0.88401 0.92220 0.88696 0.89641 0.93948 0.85732 0.85262 0.73367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 2 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.87 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.53 -14.89 9.94 -34.44 -0.34 -15.23 16 8 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 9 C 0.22 5.17 4.23 -5.19 -0.02 5.15 16 10 N -0.59 -11.35 2.46 -175.06 -0.43 -11.78 16 11 C 0.11 1.61 5.15 -4.04 -0.02 1.59 16 12 C 0.04 0.42 5.28 -3.82 -0.02 0.40 16 13 N -0.53 -5.64 4.73 -234.31 -1.11 -6.75 16 14 C 0.01 0.11 5.44 -3.71 -0.02 0.09 16 15 C 0.06 0.61 7.01 37.21 0.26 0.87 16 16 O -0.39 -4.23 10.83 -35.23 -0.38 -4.61 16 17 C 0.06 0.55 7.01 37.21 0.26 0.82 16 18 C 0.02 0.16 5.64 -3.71 -0.02 0.14 16 19 C 0.51 9.93 7.67 -10.98 -0.08 9.84 16 20 O -0.50 -12.48 13.77 -18.95 -0.26 -12.74 16 21 C -0.14 -1.83 4.85 -29.03 -0.14 -1.97 16 22 C 0.47 7.03 8.32 36.01 0.30 7.33 16 23 O -0.47 -9.33 14.94 -26.86 -0.40 -9.74 16 24 O -0.53 -5.57 13.42 -39.25 -0.53 -6.09 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.03 0.64 7.13 -51.93 -0.37 0.27 16 27 H 0.04 0.95 6.85 -51.92 -0.36 0.60 16 28 H 0.09 1.33 6.44 -51.93 -0.33 0.99 16 29 H 0.08 0.94 6.44 -51.93 -0.33 0.61 16 30 H 0.07 0.81 7.12 -51.93 -0.37 0.44 16 31 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 1.03 6.38 -51.93 -0.33 0.70 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.12 1.25 7.18 -51.93 -0.37 0.88 16 41 H 0.13 1.43 7.40 -51.93 -0.38 1.05 16 42 H 0.41 2.66 9.10 45.56 0.41 3.08 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -37.69 343.80 -7.18 -44.86 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.41 Total: 0.46 kcal Atomic # 6 Polarization: 11.01 SS G_CDS: 0.05 Total: 11.06 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.76 Total: -45.14 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -1.57 Total: -33.18 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -37.69 -7.18 -44.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050917527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.827 kcal (2) G-P(sol) polarization free energy of solvation -37.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds