Wall clock time and date at job start Tue Mar 31 2020 03:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 120.00352 * 2 1 4 4 H 1.48495 * 109.46889 * 269.99871 * 3 2 1 5 5 H 1.48510 * 109.46825 * 29.99632 * 3 2 1 6 6 H 1.48494 * 109.47200 * 149.99504 * 3 2 1 7 7 C 1.37875 * 119.99655 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00401 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00012 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47219 * 180.02562 * 9 7 2 11 11 C 1.46499 * 120.00136 * 269.99493 * 10 9 7 12 12 C 1.52996 * 109.47198 * 270.00278 * 11 10 9 13 13 N 1.46902 * 109.46980 * 179.97438 * 12 11 10 14 14 C 1.47015 * 111.00009 * 293.63325 * 13 12 11 15 15 C 1.53099 * 109.25823 * 177.60981 * 14 13 12 16 16 O 1.43011 * 109.25882 * 56.84675 * 15 14 13 17 17 C 1.43015 * 113.74031 * 301.33175 * 16 15 14 18 18 C 1.47013 * 110.99990 * 170.00210 * 13 12 11 19 19 C 1.34784 * 119.99971 * 89.99688 * 10 9 7 20 20 O 1.21274 * 119.99897 * 359.72827 * 19 10 9 21 21 C 1.50695 * 119.99635 * 179.97438 * 19 10 9 22 22 C 1.50707 * 109.47011 * 180.02562 * 21 19 10 23 23 O 1.20829 * 119.99769 * 359.97438 * 22 21 19 24 24 O 1.34227 * 119.99922 * 180.02562 * 22 21 19 25 25 H 0.97008 * 119.99482 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.47074 * 59.99766 * 9 7 2 27 27 H 1.09008 * 109.46468 * 299.99737 * 9 7 2 28 28 H 1.08997 * 109.46865 * 30.00228 * 11 10 9 29 29 H 1.08998 * 109.47058 * 149.99741 * 11 10 9 30 30 H 1.08997 * 109.47172 * 299.99762 * 12 11 10 31 31 H 1.08998 * 109.47554 * 59.99767 * 12 11 10 32 32 H 1.09006 * 109.50603 * 297.54506 * 14 13 12 33 33 H 1.09003 * 109.50663 * 57.67164 * 14 13 12 34 34 H 1.09000 * 109.50174 * 296.90829 * 15 14 13 35 35 H 1.08998 * 109.54067 * 176.80673 * 15 14 13 36 36 H 1.08996 * 109.50161 * 298.73506 * 17 16 15 37 37 H 1.09002 * 109.54009 * 178.62878 * 17 16 15 38 38 H 1.08999 * 109.50620 * 302.32609 * 18 13 12 39 39 H 1.08999 * 109.51226 * 62.41126 * 18 13 12 40 40 H 1.09005 * 109.47403 * 300.00056 * 21 19 10 41 41 H 1.09002 * 109.47422 * 60.00295 * 21 19 10 42 42 H 0.96703 * 116.99391 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0010 11 6 4.2435 -3.2663 1.2696 12 6 5.6883 -3.0260 1.7118 13 7 5.9325 -3.7183 2.9843 14 6 5.1383 -3.1231 4.0688 15 6 5.3770 -3.9102 5.3601 16 8 6.7762 -3.9186 5.6555 17 6 7.5797 -4.4920 4.6207 18 6 7.3633 -3.7108 3.3220 19 6 4.2248 -3.2105 -1.1663 20 8 4.0183 -2.6403 -2.2165 21 6 4.7276 -4.6311 -1.1664 22 6 4.8960 -5.1044 -2.5873 23 8 4.6341 -4.3641 -3.5056 24 8 5.3359 -6.3485 -2.8326 25 1 -0.4850 0.8402 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8751 -0.6805 -0.8890 28 1 3.5625 -2.8823 2.0291 29 1 4.0765 -4.3354 1.1390 30 1 6.3694 -3.4100 0.9524 31 1 5.8554 -1.9568 1.8424 32 1 5.4399 -2.0857 4.2138 33 1 4.0804 -3.1622 3.8089 34 1 5.0257 -4.9341 5.2324 35 1 4.8347 -3.4389 6.1798 36 1 7.2925 -5.5329 4.4716 37 1 8.6308 -4.4416 4.9051 38 1 7.9298 -4.1790 2.5170 39 1 7.7008 -2.6829 3.4543 40 1 5.6877 -4.6768 -0.6524 41 1 4.0097 -5.2707 -0.6527 42 1 5.4276 -6.6068 -3.7600 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050917527.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:59 Heat of formation + Delta-G solvation = -181.392313 kcal Electronic energy + Delta-G solvation = -25331.567184 eV Core-core repulsion = 21504.207449 eV Total energy + Delta-G solvation = -3827.359736 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.62790 -40.59019 -40.06547 -37.59886 -36.89855 -36.08416 -34.74790 -32.38652 -32.11198 -30.96872 -29.39071 -27.02576 -24.97340 -24.90022 -23.46243 -22.74151 -21.27875 -19.86822 -19.17500 -19.10552 -17.89740 -17.78215 -17.25272 -17.10930 -16.96512 -16.68717 -16.22283 -16.06140 -15.89222 -15.66284 -15.35095 -14.89909 -14.65996 -14.39984 -14.13468 -13.94301 -13.68515 -13.43346 -13.20304 -13.02481 -12.89428 -12.50593 -12.46783 -12.41781 -12.25135 -12.08264 -11.82264 -11.75692 -11.55428 -11.37441 -10.84412 -10.63004 -10.58804 -9.54523 -9.35177 -8.34983 -6.39266 1.28724 1.29327 1.34447 1.41046 1.70775 1.77477 2.28633 2.41399 2.85254 2.99829 3.04604 3.48227 3.86396 3.97313 4.06338 4.11553 4.23876 4.26914 4.27786 4.36541 4.45353 4.51453 4.58147 4.66468 4.71772 4.77539 4.82425 4.90890 4.92844 4.98640 5.06043 5.10542 5.44893 5.57840 5.69635 5.89087 5.97190 6.22580 6.25656 6.60890 6.63365 7.07150 7.21461 7.40452 8.81849 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.008717 B = 0.005776 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3211.189853 B = 4846.142592 C = 7486.745057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.942 3.058 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.239 1.239 7 C -0.533 4.533 8 H 0.033 0.967 9 C 0.228 3.772 10 N -0.594 5.594 11 C 0.112 3.888 12 C 0.046 3.954 13 N -0.528 5.528 14 C 0.009 3.991 15 C 0.067 3.933 16 O -0.409 6.409 17 C 0.063 3.937 18 C 0.016 3.984 19 C 0.495 3.505 20 O -0.562 6.562 21 C -0.123 4.123 22 C 0.480 3.520 23 O -0.528 6.528 24 O -0.505 6.505 25 H 0.268 0.732 26 H 0.047 0.953 27 H 0.016 0.984 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.095 0.905 31 H 0.024 0.976 32 H 0.030 0.970 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.107 0.893 39 H 0.031 0.969 40 H 0.171 0.829 41 H 0.163 0.837 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.002 -13.996 9.673 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.765 3.235 4 H -0.205 1.205 5 H -0.200 1.200 6 H -0.162 1.162 7 C -0.572 4.572 8 H 0.052 0.948 9 C 0.106 3.894 10 N -0.326 5.326 11 C -0.011 4.011 12 C -0.084 4.084 13 N -0.253 5.253 14 C -0.120 4.120 15 C -0.010 4.010 16 O -0.328 6.328 17 C -0.014 4.014 18 C -0.112 4.112 19 C 0.282 3.718 20 O -0.439 6.439 21 C -0.162 4.162 22 C 0.322 3.678 23 O -0.415 6.415 24 O -0.319 6.319 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.113 0.887 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.131 0.869 38 H 0.125 0.875 39 H 0.049 0.951 40 H 0.189 0.811 41 H 0.180 0.820 42 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 17.562 -13.679 9.399 24.163 hybrid contribution -0.334 1.780 -1.120 2.130 sum 17.228 -11.899 8.278 22.515 Atomic orbital electron populations 1.70044 1.08104 1.28212 1.52022 1.25784 0.95600 1.03074 0.94031 0.85805 0.79932 0.78918 0.78833 1.20521 1.19958 1.16239 1.21554 0.91523 0.93303 1.50771 0.94831 1.19275 0.92751 0.80473 0.96888 1.47833 1.64124 1.14695 1.05972 1.21671 0.95960 0.98832 0.84622 1.22481 0.97244 0.96600 0.92026 1.62206 1.07423 1.53740 1.01949 1.22929 0.99859 0.96650 0.92535 1.22725 0.81773 1.00553 0.95960 1.87955 1.18514 1.82963 1.43344 1.22815 0.96283 0.96711 0.85590 1.22888 0.88502 0.99912 0.99891 1.20684 0.78540 0.89073 0.83472 1.90823 1.52163 1.68569 1.32351 1.21288 1.08803 0.93415 0.92688 1.22993 0.73010 0.79600 0.92229 1.90897 1.46366 1.56427 1.47859 1.84440 1.78610 1.30780 1.38053 0.92321 0.93488 0.96629 0.90835 0.87122 0.88666 0.95719 0.95180 0.88988 0.91242 0.87556 0.91289 0.86890 0.87495 0.95078 0.81138 0.82013 0.71042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.63 13.96 21.45 0.30 -59.33 16 2 C 0.01 0.78 5.47 84.65 0.46 1.25 16 3 Si 0.94 44.67 27.47 68.60 1.88 46.56 16 4 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 5 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 6 H -0.24 -10.15 6.54 99.48 0.65 -9.50 16 7 C -0.53 -30.93 9.94 25.60 0.25 -30.68 16 8 H 0.03 2.16 8.06 -2.91 -0.02 2.14 16 9 C 0.23 10.87 4.23 85.63 0.36 11.23 16 10 N -0.59 -22.39 2.46 -826.16 -2.03 -24.42 16 11 C 0.11 2.94 5.15 86.38 0.44 3.38 16 12 C 0.05 0.96 5.28 86.30 0.46 1.42 16 13 N -0.53 -9.60 4.73 -895.21 -4.23 -13.83 16 14 C 0.01 0.17 5.44 86.31 0.47 0.64 16 15 C 0.07 1.14 7.01 72.02 0.50 1.64 16 16 O -0.41 -7.97 10.83 -148.98 -1.61 -9.59 16 17 C 0.06 0.87 7.01 72.01 0.50 1.38 16 18 C 0.02 0.24 5.64 86.31 0.49 0.73 16 19 C 0.49 19.13 7.67 87.65 0.67 19.80 16 20 O -0.56 -29.11 13.77 20.43 0.28 -28.83 16 21 C -0.12 -2.90 4.85 29.10 0.14 -2.76 16 22 C 0.48 13.29 8.32 71.24 0.59 13.88 16 23 O -0.53 -21.28 14.94 29.71 0.44 -20.84 16 24 O -0.50 -8.92 13.42 -51.39 -0.69 -9.61 16 25 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 26 H 0.05 2.06 7.13 -2.39 -0.02 2.05 16 27 H 0.02 0.82 6.85 -2.38 -0.02 0.80 16 28 H 0.07 2.16 6.44 -2.39 -0.02 2.15 16 29 H 0.11 2.22 6.44 -2.39 -0.02 2.20 16 30 H 0.10 1.65 7.12 -2.39 -0.02 1.63 16 31 H 0.02 0.62 8.12 -2.39 -0.02 0.60 16 32 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.09 1.87 6.38 -2.39 -0.02 1.85 16 34 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.17 8.09 -2.39 -0.02 1.15 16 39 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.17 2.48 7.18 -2.38 -0.02 2.46 16 41 H 0.16 2.85 7.40 -2.39 -0.02 2.83 16 42 H 0.43 4.30 9.10 -74.06 -0.67 3.62 16 Total: -1.00 -87.82 343.80 0.01 -87.81 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: 0.31 Total: 10.16 kcal Atomic # 6 Polarization: 16.55 SS G_CDS: 5.35 Total: 21.91 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -5.96 Total: -97.58 kcal Atomic # 8 Polarization: -67.29 SS G_CDS: -1.58 Total: -68.86 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.88 Total: 46.56 kcal Total: -87.82 0.01 -87.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050917527.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.579 kcal (2) G-P(sol) polarization free energy of solvation -87.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds