Wall clock time and date at job start Tue Mar 31 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38835 * 119.66741 * 2 1 4 4 C 1.36621 * 120.53238 * 180.02562 * 3 2 1 5 5 C 1.39638 * 119.76179 * 359.97438 * 4 3 2 6 6 C 1.46485 * 134.03008 * 180.02562 * 5 4 3 7 7 C 1.50695 * 126.50483 * 359.97438 * 6 5 4 8 8 C 1.50702 * 109.47377 * 84.70754 * 7 6 5 9 9 O 1.21282 * 119.99614 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00153 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99811 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99848 * 180.02562 * 10 8 7 13 13 H 1.08996 * 109.47049 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47188 * 120.00098 * 12 10 8 15 15 C 1.50706 * 109.46582 * 239.99950 * 12 10 8 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 10 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 C 1.34242 * 106.99475 * 179.73266 * 6 5 4 24 24 N 1.36831 * 109.92779 * 0.22418 * 23 6 5 25 25 H 0.97003 * 125.05638 * 179.97438 * 24 23 6 26 26 C 1.37683 * 109.87988 * 0.02562 * 24 23 6 27 27 C 1.37749 * 119.66701 * 180.35011 * 2 1 3 28 28 H 1.09001 * 109.47089 * 89.99771 * 1 2 3 29 29 H 1.09005 * 109.47076 * 210.00258 * 1 2 3 30 30 H 1.09005 * 109.47121 * 329.99674 * 1 2 3 31 31 H 1.08004 * 119.73114 * 359.97438 * 3 2 1 32 32 H 1.07993 * 120.12389 * 179.97438 * 4 3 2 33 33 H 1.09009 * 109.47044 * 324.70720 * 7 6 5 34 34 H 1.08996 * 109.47235 * 204.71537 * 7 6 5 35 35 H 1.09005 * 109.46851 * 270.00168 * 11 10 8 36 36 H 1.08997 * 109.47129 * 29.99442 * 11 10 8 37 37 H 1.08993 * 109.46804 * 150.00082 * 11 10 8 38 38 H 1.09002 * 109.47153 * 299.99573 * 14 12 10 39 39 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 40 40 H 1.09004 * 109.47261 * 59.99745 * 14 12 10 41 41 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 42 42 H 1.08001 * 125.03665 * 180.19377 * 23 6 5 43 43 H 1.07998 * 120.11293 * 359.52259 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2064 0.0000 4 6 3.5602 1.2270 -0.0005 5 6 4.2716 0.0254 -0.0005 6 6 5.6966 -0.3142 -0.0005 7 6 6.8494 0.6563 -0.0011 8 6 7.1495 1.0808 1.4135 9 8 6.4922 0.6383 2.3317 10 7 8.1483 1.9520 1.6582 11 6 8.9418 2.4869 0.5489 12 6 8.4403 2.3641 3.0333 13 1 7.7513 1.8665 3.7158 14 6 9.8777 1.9777 3.3872 15 6 8.2769 3.8573 3.1555 16 1 7.9852 4.4409 2.2949 17 6 8.4999 4.4783 4.3662 18 7 8.3578 5.7814 4.4728 19 14 9.0051 3.4690 5.8546 20 1 10.4862 3.3771 5.9108 21 1 8.5025 4.1227 7.0897 22 1 8.4282 2.1049 5.7467 23 6 5.7807 -1.6539 0.0055 24 7 4.5260 -2.2000 0.0043 25 1 4.3320 -3.1504 0.0074 26 6 3.5800 -1.1996 -0.0033 27 6 2.1888 -1.1969 -0.0073 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6444 2.1360 -0.0004 32 1 4.0881 2.1691 -0.0009 33 1 6.5871 1.5318 -0.5952 34 1 7.7285 0.1760 -0.4306 35 1 9.7981 1.8370 0.3683 36 1 8.3258 2.5340 -0.3490 37 1 9.2921 3.4875 0.8022 38 1 9.9959 0.8977 3.2988 39 1 10.0951 2.2847 4.4102 40 1 10.5664 2.4756 2.7046 41 1 8.5151 6.2183 5.3244 42 1 6.7020 -2.2173 0.0100 43 1 1.6452 -2.1301 -0.0052 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000078420457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:25 Heat of formation + Delta-G solvation = 24.974940 kcal Electronic energy + Delta-G solvation = -24062.018457 eV Core-core repulsion = 20686.749491 eV Total energy + Delta-G solvation = -3375.268966 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.18056 -38.99543 -37.25559 -35.42089 -33.13424 -32.59923 -31.51351 -30.36441 -29.59358 -27.32207 -26.10856 -25.86245 -25.06121 -22.66565 -21.60282 -20.83019 -19.36410 -18.17954 -17.56883 -16.92617 -16.22699 -16.03664 -15.40217 -15.09509 -14.85531 -14.39013 -14.11170 -14.05454 -13.65539 -13.37368 -13.06059 -12.86495 -12.75312 -12.34767 -12.29127 -12.17145 -12.10138 -11.83839 -11.65303 -11.47647 -11.26089 -11.13580 -10.99691 -10.70694 -10.63933 -10.10721 -9.60660 -9.47981 -9.27158 -8.86198 -8.59766 -7.99345 -7.63381 -7.46413 -6.11371 -4.11246 1.25412 1.76546 2.75618 3.20267 3.25793 3.39553 3.42318 3.43089 3.92808 4.11650 4.38693 4.79404 4.89522 4.96688 5.09300 5.21051 5.30883 5.34747 5.35273 5.43679 5.54566 5.62968 5.71591 5.76364 5.78670 5.90087 6.00807 6.00862 6.07913 6.27000 6.29520 6.31754 6.41578 6.54469 6.64896 6.73532 6.84776 6.87526 6.92670 7.20688 7.30132 7.45096 7.61848 7.68890 8.27868 8.54258 8.89249 9.05810 9.50521 11.01415 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.003845 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.857047 B = 7281.218863 C = 7935.132244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.070 4.070 3 C -0.148 4.148 4 C -0.058 4.058 5 C -0.092 4.092 6 C -0.139 4.139 7 C -0.066 4.066 8 C 0.505 3.495 9 O -0.543 6.543 10 N -0.592 5.592 11 C 0.082 3.918 12 C 0.229 3.771 13 H 0.061 0.939 14 C -0.159 4.159 15 C -0.526 4.526 16 H 0.079 0.921 17 C 0.075 3.925 18 N -0.896 5.896 19 Si 0.883 3.117 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.264 1.264 23 C 0.053 3.947 24 N -0.597 5.597 25 H 0.412 0.588 26 C 0.099 3.901 27 C -0.137 4.137 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.031 0.969 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.265 0.735 42 H 0.167 0.833 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 -14.489 -13.304 21.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.168 4.168 4 C -0.076 4.076 5 C -0.097 4.097 6 C -0.146 4.146 7 C -0.106 4.106 8 C 0.292 3.708 9 O -0.421 6.421 10 N -0.323 5.323 11 C -0.062 4.062 12 C 0.127 3.873 13 H 0.079 0.921 14 C -0.217 4.217 15 C -0.564 4.564 16 H 0.097 0.903 17 C -0.128 4.128 18 N -0.534 5.534 19 Si 0.713 3.287 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.189 1.189 23 C -0.073 4.073 24 N -0.200 5.200 25 H 0.249 0.751 26 C -0.008 4.008 27 C -0.158 4.158 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.102 0.898 38 H 0.050 0.950 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.184 0.816 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.787 -14.680 -12.681 20.903 hybrid contribution 0.474 -0.741 0.925 1.277 sum -7.313 -15.421 -11.755 20.724 Atomic orbital electron populations 1.20740 0.91312 1.02580 1.01943 1.19490 0.95498 0.92333 0.99835 1.20483 0.93896 0.97243 1.05135 1.20310 0.93628 0.96672 0.97023 1.18994 0.92473 0.92458 1.05781 1.19662 0.91997 0.92603 1.10353 1.20010 0.96195 0.98653 0.95753 1.20455 0.80258 0.79356 0.90718 1.90655 1.49226 1.55889 1.46298 1.47878 1.32578 1.43082 1.08807 1.21652 0.94852 1.00734 0.88954 1.19237 0.92421 0.96294 0.79322 0.92125 1.22439 1.00120 0.98430 1.00744 1.21183 1.47462 0.89830 0.97919 0.90320 1.24861 0.94707 0.94767 0.98417 1.69879 1.49195 1.08539 1.25760 0.86918 0.78453 0.80956 0.82366 1.20457 1.22200 1.18851 1.21459 0.87518 0.93578 1.04709 1.41593 1.04607 1.07684 1.66108 0.75132 1.18168 0.90640 0.88016 1.03929 1.19748 0.89812 0.97903 1.08345 0.91460 0.91936 0.91489 0.86192 0.86058 0.88599 0.88873 0.93897 0.92417 0.89758 0.94965 0.93332 0.92630 0.92501 0.81620 0.86708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 9.99 36.01 0.36 -0.63 16 2 C -0.07 -0.88 5.88 -104.58 -0.61 -1.49 16 3 C -0.15 -2.04 9.61 -39.94 -0.38 -2.42 16 4 C -0.06 -0.91 10.05 -39.64 -0.40 -1.31 16 5 C -0.09 -1.50 6.35 -105.13 -0.67 -2.17 16 6 C -0.14 -2.13 4.81 -102.71 -0.49 -2.62 16 7 C -0.07 -0.96 4.78 -29.04 -0.14 -1.10 16 8 C 0.51 10.20 7.67 -10.98 -0.08 10.11 16 9 O -0.54 -13.33 15.36 5.56 0.09 -13.25 16 10 N -0.59 -12.21 2.75 -175.26 -0.48 -12.69 16 11 C 0.08 1.31 9.24 59.85 0.55 1.86 16 12 C 0.23 5.62 2.23 -69.08 -0.15 5.47 16 13 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 14 C -0.16 -3.48 8.67 37.16 0.32 -3.16 16 15 C -0.53 -14.67 8.57 -34.44 -0.30 -14.97 16 16 H 0.08 2.35 7.58 -52.49 -0.40 1.95 16 17 C 0.08 2.16 5.45 -17.82 -0.10 2.07 16 18 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 19 Si 0.88 22.24 24.37 -169.99 -4.14 18.10 16 20 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 21 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 22 H -0.26 -6.62 6.53 56.52 0.37 -6.25 16 23 C 0.05 0.67 11.73 -16.73 -0.20 0.47 16 24 N -0.60 -7.04 6.07 -10.65 -0.06 -7.10 16 25 H 0.41 3.34 8.96 -40.82 -0.37 2.98 16 26 C 0.10 1.42 7.28 -83.99 -0.61 0.81 16 27 C -0.14 -1.74 9.71 -39.43 -0.38 -2.12 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 30 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 31 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 32 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.10 1.29 7.40 -51.92 -0.38 0.90 16 34 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.75 6.44 -51.93 -0.33 0.41 16 37 H 0.08 1.50 7.02 -51.93 -0.36 1.14 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 1.11 3.27 -51.93 -0.17 0.94 16 40 H 0.05 1.12 7.67 -51.93 -0.40 0.72 16 41 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.11 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 348.58 15.07 5.25 5.25 Total: -1.00 -35.59 348.58 -7.99 -43.58 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -6.12 Total: 3.73 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -3.28 Total: -11.19 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.23 Total: -46.21 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.14 Total: 18.10 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.59 -7.99 -43.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.551 kcal (2) G-P(sol) polarization free energy of solvation -35.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds