Wall clock time and date at job start Tue Mar 31 2020 04:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38835 * 119.66741 * 2 1 4 4 C 1.36621 * 120.53238 * 180.02562 * 3 2 1 5 5 C 1.39638 * 119.76179 * 359.97438 * 4 3 2 6 6 C 1.46485 * 134.03008 * 180.02562 * 5 4 3 7 7 C 1.50695 * 126.50483 * 359.97438 * 6 5 4 8 8 C 1.50702 * 109.47377 * 84.70754 * 7 6 5 9 9 O 1.21282 * 119.99614 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00153 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99811 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99848 * 180.02562 * 10 8 7 13 13 H 1.08996 * 109.47049 * 359.97438 * 12 10 8 14 14 C 1.52997 * 109.47188 * 120.00098 * 12 10 8 15 15 C 1.50706 * 109.46582 * 239.99950 * 12 10 8 16 16 H 1.07999 * 120.00196 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99394 * 179.97438 * 15 12 10 18 18 N 1.31514 * 119.99350 * 179.97438 * 17 15 12 19 19 Si 1.86789 * 120.00458 * 0.02562 * 17 15 12 20 20 H 1.48500 * 109.47356 * 89.99481 * 19 17 15 21 21 H 1.48501 * 109.47162 * 209.99853 * 19 17 15 22 22 H 1.48503 * 109.47180 * 329.99546 * 19 17 15 23 23 C 1.34242 * 106.99475 * 179.73266 * 6 5 4 24 24 N 1.36831 * 109.92779 * 0.22418 * 23 6 5 25 25 H 0.97003 * 125.05638 * 179.97438 * 24 23 6 26 26 C 1.37683 * 109.87988 * 0.02562 * 24 23 6 27 27 C 1.37749 * 119.66701 * 180.35011 * 2 1 3 28 28 H 1.09001 * 109.47089 * 89.99771 * 1 2 3 29 29 H 1.09005 * 109.47076 * 210.00258 * 1 2 3 30 30 H 1.09005 * 109.47121 * 329.99674 * 1 2 3 31 31 H 1.08004 * 119.73114 * 359.97438 * 3 2 1 32 32 H 1.07993 * 120.12389 * 179.97438 * 4 3 2 33 33 H 1.09009 * 109.47044 * 324.70720 * 7 6 5 34 34 H 1.08996 * 109.47235 * 204.71537 * 7 6 5 35 35 H 1.09005 * 109.46851 * 270.00168 * 11 10 8 36 36 H 1.08997 * 109.47129 * 29.99442 * 11 10 8 37 37 H 1.08993 * 109.46804 * 150.00082 * 11 10 8 38 38 H 1.09002 * 109.47153 * 299.99573 * 14 12 10 39 39 H 1.09001 * 109.46832 * 179.97438 * 14 12 10 40 40 H 1.09004 * 109.47261 * 59.99745 * 14 12 10 41 41 H 0.97005 * 119.99656 * 180.02562 * 18 17 15 42 42 H 1.08001 * 125.03665 * 180.19377 * 23 6 5 43 43 H 1.07998 * 120.11293 * 359.52259 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1942 1.2064 0.0000 4 6 3.5602 1.2270 -0.0005 5 6 4.2716 0.0254 -0.0005 6 6 5.6966 -0.3142 -0.0005 7 6 6.8494 0.6563 -0.0011 8 6 7.1495 1.0808 1.4135 9 8 6.4922 0.6383 2.3317 10 7 8.1483 1.9520 1.6582 11 6 8.9418 2.4869 0.5489 12 6 8.4403 2.3641 3.0333 13 1 7.7513 1.8665 3.7158 14 6 9.8777 1.9777 3.3872 15 6 8.2769 3.8573 3.1555 16 1 7.9852 4.4409 2.2949 17 6 8.4999 4.4783 4.3662 18 7 8.3578 5.7814 4.4728 19 14 9.0051 3.4690 5.8546 20 1 10.4862 3.3771 5.9108 21 1 8.5025 4.1227 7.0897 22 1 8.4282 2.1049 5.7467 23 6 5.7807 -1.6539 0.0055 24 7 4.5260 -2.2000 0.0043 25 1 4.3320 -3.1504 0.0074 26 6 3.5800 -1.1996 -0.0033 27 6 2.1888 -1.1969 -0.0073 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6444 2.1360 -0.0004 32 1 4.0881 2.1691 -0.0009 33 1 6.5871 1.5318 -0.5952 34 1 7.7285 0.1760 -0.4306 35 1 9.7981 1.8370 0.3683 36 1 8.3258 2.5340 -0.3490 37 1 9.2921 3.4875 0.8022 38 1 9.9959 0.8977 3.2988 39 1 10.0951 2.2847 4.4102 40 1 10.5664 2.4756 2.7046 41 1 8.5151 6.2183 5.3244 42 1 6.7020 -2.2173 0.0100 43 1 1.6452 -2.1301 -0.0052 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078420457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:25 Heat of formation + Delta-G solvation = 1.682876 kcal Electronic energy + Delta-G solvation = -24063.028477 eV Core-core repulsion = 20686.749491 eV Total energy + Delta-G solvation = -3376.278986 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.19161 -40.57441 -38.23631 -37.16905 -34.80574 -34.06093 -32.74308 -31.91445 -30.64888 -28.44827 -27.52507 -27.13801 -26.79337 -23.69402 -23.30475 -21.80887 -20.68103 -19.57924 -18.92396 -18.61367 -17.77994 -17.28430 -17.10155 -16.42556 -16.10317 -15.79089 -15.35549 -15.09961 -14.89567 -14.69587 -14.44325 -14.22645 -14.10448 -13.95889 -13.72438 -13.50883 -13.29923 -13.01045 -12.92971 -12.88228 -12.74583 -12.63103 -12.23814 -12.09395 -12.03449 -11.67916 -11.58257 -11.33709 -10.79396 -10.71270 -10.29478 -9.30481 -9.01551 -8.47931 -8.35093 -6.38744 0.23043 0.71304 1.24244 1.34262 1.43084 1.69012 1.89909 2.27346 2.30084 2.51086 2.97862 3.00547 3.81932 3.92524 3.98435 4.06050 4.14357 4.35696 4.42710 4.47069 4.51436 4.55287 4.60106 4.63499 4.66739 4.69817 4.85210 4.87751 4.91450 4.93683 4.99786 5.04323 5.14004 5.19965 5.29509 5.35142 5.53168 5.64023 5.71709 5.78729 5.83009 5.87534 6.23383 6.28428 6.63365 6.79202 6.85369 7.24055 7.51369 8.81045 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018286 B = 0.003845 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.857047 B = 7281.218863 C = 7935.132244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.079 4.079 3 C -0.155 4.155 4 C -0.092 4.092 5 C -0.126 4.126 6 C -0.183 4.183 7 C -0.049 4.049 8 C 0.498 3.502 9 O -0.596 6.596 10 N -0.600 5.600 11 C 0.078 3.922 12 C 0.232 3.768 13 H 0.025 0.975 14 C -0.151 4.151 15 C -0.525 4.525 16 H 0.045 0.955 17 C 0.022 3.978 18 N -0.940 5.940 19 Si 0.941 3.059 20 H -0.251 1.251 21 H -0.296 1.296 22 H -0.266 1.266 23 C 0.071 3.929 24 N -0.584 5.584 25 H 0.431 0.569 26 C 0.082 3.918 27 C -0.137 4.137 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.268 0.732 42 H 0.204 0.796 43 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.978 -17.479 -14.413 23.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.081 4.081 3 C -0.175 4.175 4 C -0.111 4.111 5 C -0.131 4.131 6 C -0.190 4.190 7 C -0.089 4.089 8 C 0.288 3.712 9 O -0.477 6.477 10 N -0.331 5.331 11 C -0.064 4.064 12 C 0.128 3.872 13 H 0.042 0.958 14 C -0.209 4.209 15 C -0.563 4.563 16 H 0.063 0.937 17 C -0.177 4.177 18 N -0.580 5.580 19 Si 0.769 3.231 20 H -0.177 1.177 21 H -0.224 1.224 22 H -0.191 1.191 23 C -0.056 4.056 24 N -0.188 5.188 25 H 0.271 0.729 26 C -0.025 4.025 27 C -0.157 4.157 28 H 0.101 0.899 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.150 0.850 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.152 0.848 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.220 0.780 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.276 -17.691 -13.838 23.610 hybrid contribution 0.218 0.200 1.187 1.223 sum -7.058 -17.492 -12.651 22.712 Atomic orbital electron populations 1.20783 0.88720 1.03475 1.03220 1.19908 0.97413 0.91750 0.99000 1.20754 0.93435 0.98678 1.04586 1.20404 0.94722 0.96451 0.99526 1.19376 0.93735 0.93310 1.06636 1.19875 0.91714 0.93968 1.13455 1.19959 0.97848 0.99367 0.91719 1.21481 0.78843 0.78321 0.92598 1.90617 1.50783 1.57814 1.48466 1.47982 1.33473 1.43345 1.08328 1.21890 0.96135 0.99919 0.88431 1.18884 0.93513 0.93324 0.81496 0.95757 1.22279 0.97989 1.00180 1.00419 1.21416 1.46355 0.91749 0.96816 0.93696 1.25642 0.94988 0.95663 1.01370 1.70007 1.51021 1.10254 1.26679 0.85975 0.79557 0.79022 0.78581 1.17655 1.22375 1.19092 1.22022 0.88831 0.93108 1.01597 1.41619 1.03982 1.08360 1.64886 0.72949 1.18430 0.91568 0.88099 1.04435 1.20145 0.89464 0.99183 1.06947 0.89868 0.90505 0.91158 0.85045 0.87595 0.87778 0.84759 0.90291 0.89271 0.92224 0.92506 0.94296 0.91037 0.92315 0.77973 0.83782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.70 9.99 71.24 0.71 -0.98 16 2 C -0.08 -1.91 5.88 -19.84 -0.12 -2.02 16 3 C -0.16 -4.38 9.61 22.03 0.21 -4.16 16 4 C -0.09 -3.06 10.05 22.23 0.22 -2.84 16 5 C -0.13 -4.13 6.35 -20.20 -0.13 -4.26 16 6 C -0.18 -5.41 4.81 -18.63 -0.09 -5.50 16 7 C -0.05 -1.37 4.78 29.10 0.14 -1.23 16 8 C 0.50 20.00 7.67 87.66 0.67 20.67 16 9 O -0.60 -29.95 15.36 -3.04 -0.05 -30.00 16 10 N -0.60 -24.51 2.75 -826.79 -2.28 -26.79 16 11 C 0.08 2.37 9.24 127.77 1.18 3.55 16 12 C 0.23 11.44 2.23 44.25 0.10 11.54 16 13 H 0.02 1.39 5.96 -2.39 -0.01 1.37 16 14 C -0.15 -6.32 8.67 71.98 0.62 -5.70 16 15 C -0.52 -30.25 8.57 25.60 0.22 -30.03 16 16 H 0.04 2.82 7.58 -2.91 -0.02 2.79 16 17 C 0.02 1.29 5.45 84.66 0.46 1.75 16 18 N -0.94 -58.77 13.96 21.45 0.30 -58.47 16 19 Si 0.94 46.36 24.37 68.60 1.67 48.03 16 20 H -0.25 -11.25 6.87 99.48 0.68 -10.57 16 21 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 22 H -0.27 -13.10 6.53 99.48 0.65 -12.45 16 23 C 0.07 1.62 11.73 83.00 0.97 2.60 16 24 N -0.58 -12.41 6.07 -187.61 -1.14 -13.55 16 25 H 0.43 5.68 8.96 -92.71 -0.83 4.84 16 26 C 0.08 2.26 7.28 39.03 0.28 2.54 16 27 C -0.14 -3.24 9.71 22.37 0.22 -3.03 16 28 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.08 1.02 8.08 -2.38 -0.02 1.00 16 30 H 0.07 1.08 8.08 -2.38 -0.02 1.06 16 31 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.11 3.61 8.06 -2.91 -0.02 3.58 16 33 H 0.10 2.69 7.40 -2.38 -0.02 2.67 16 34 H 0.13 2.56 8.11 -2.39 -0.02 2.54 16 35 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.09 2.12 6.44 -2.39 -0.02 2.10 16 37 H 0.06 2.11 7.02 -2.39 -0.02 2.09 16 38 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.04 1.69 3.27 -2.39 -0.01 1.69 16 40 H 0.07 2.73 7.67 -2.38 -0.02 2.71 16 41 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 42 H 0.20 2.93 8.06 -2.91 -0.02 2.91 16 43 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -82.16 348.58 4.31 -77.85 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.12 Total: 20.01 kcal Atomic # 6 Polarization: -22.77 SS G_CDS: 5.68 Total: -17.09 kcal Atomic # 7 Polarization: -95.69 SS G_CDS: -3.12 Total: -98.80 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.05 Total: -30.00 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 1.67 Total: 48.03 kcal Total: -82.16 4.31 -77.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078420457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.536 kcal (2) G-P(sol) polarization free energy of solvation -82.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds