Wall clock time and date at job start Tue Mar 31 2020 04:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48494 * 109.46968 * 239.99950 * 3 2 1 5 5 H 1.48498 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47017 * 119.99852 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99908 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99619 * 90.00204 * 10 9 7 12 12 C 1.52997 * 109.47212 * 89.99960 * 11 10 9 13 13 C 1.53785 * 113.61570 * 274.13670 * 12 11 10 14 14 C 1.53956 * 87.02052 * 220.04627 * 13 12 11 15 15 C 1.53777 * 87.11087 * 25.36196 * 14 13 12 16 16 C 1.34774 * 120.00119 * 270.00028 * 10 9 7 17 17 O 1.21689 * 120.00055 * 0.02562 * 16 10 9 18 18 C 1.46427 * 119.99550 * 179.97438 * 16 10 9 19 19 C 1.34811 * 119.99673 * 179.97438 * 18 16 10 20 20 C 1.47214 * 119.99770 * 180.02562 * 19 18 16 21 21 C 1.40266 * 120.58268 * 180.02562 * 20 19 18 22 22 C 1.38285 * 118.26694 * 179.97438 * 21 20 19 23 23 C 1.38395 * 119.33386 * 359.97438 * 22 21 20 24 24 N 1.31940 * 121.13637 * 0.02972 * 23 22 21 25 25 C 1.31662 * 121.90313 * 359.66949 * 24 23 22 26 26 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46741 * 59.99693 * 9 7 2 28 28 H 1.09003 * 109.46917 * 300.00358 * 9 7 2 29 29 H 1.09002 * 109.47068 * 210.00020 * 11 10 9 30 30 H 1.09001 * 109.47372 * 330.00108 * 11 10 9 31 31 H 1.09001 * 112.85054 * 45.33091 * 12 11 10 32 32 H 1.09000 * 113.61195 * 334.56762 * 13 12 11 33 33 H 1.09001 * 113.61520 * 105.46896 * 13 12 11 34 34 H 1.09005 * 113.53676 * 270.80967 * 14 13 12 35 35 H 1.08993 * 113.66514 * 139.93360 * 14 13 12 36 36 H 1.09011 * 113.61618 * 220.09268 * 15 14 13 37 37 H 1.09000 * 113.69499 * 89.19666 * 15 14 13 38 38 H 1.08002 * 120.00590 * 0.02562 * 18 16 10 39 39 H 1.07999 * 120.00175 * 0.02562 * 19 18 16 40 40 H 1.08002 * 120.86667 * 359.96269 * 21 20 19 41 41 H 1.07996 * 120.33112 * 180.02562 * 22 21 20 42 42 H 1.07996 * 119.43038 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.73337 * 180.29496 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6799 -4.1688 1.2702 12 6 1.7496 -5.2998 1.7130 13 6 0.5276 -4.8154 2.5112 14 6 0.7316 -6.0447 3.4154 15 6 2.2108 -6.0101 2.9966 16 6 2.6400 -4.1254 -1.1658 17 8 2.2442 -3.6631 -2.2196 18 6 3.5920 -5.2380 -1.1659 19 6 4.0288 -5.7512 -2.3335 20 6 4.9854 -6.8701 -2.3336 21 6 5.4483 -7.4132 -3.5412 22 6 6.3466 -8.4630 -3.4854 23 6 6.7569 -8.9395 -2.2526 24 7 6.3052 -8.4099 -1.1317 25 6 5.4537 -7.4057 -1.1303 26 1 -0.4851 0.8401 -0.0004 27 1 0.6240 -2.5574 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 3.6893 -4.5589 1.1393 30 1 2.6882 -3.3868 2.0295 31 1 1.4983 -5.9833 0.9020 32 1 0.6882 -3.8661 3.0222 33 1 -0.4025 -4.8395 1.9433 34 1 0.2007 -6.9319 3.0702 35 1 0.5726 -5.8403 4.4741 36 1 2.6379 -6.9974 2.8199 37 1 2.8338 -5.3885 3.6398 38 1 3.9436 -5.6480 -0.2307 39 1 3.6769 -5.3415 -3.2687 40 1 5.1117 -7.0217 -4.4898 41 1 6.7249 -8.9060 -4.3948 42 1 7.4581 -9.7596 -2.2072 43 1 5.1104 -6.9958 -0.1918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096425233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:39 Heat of formation + Delta-G solvation = 33.537132 kcal Electronic energy + Delta-G solvation = -23675.064679 eV Core-core repulsion = 20300.166998 eV Total energy + Delta-G solvation = -3374.897681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.27723 -39.40701 -38.14408 -34.83323 -34.32083 -32.65161 -32.40039 -30.00045 -28.44988 -26.88061 -25.41288 -24.71168 -23.75268 -22.92325 -22.64488 -20.52408 -19.19450 -18.25945 -17.56101 -16.77572 -16.48455 -16.10559 -15.60994 -15.09347 -14.92958 -14.75461 -14.23341 -14.14067 -13.90041 -13.59023 -13.28195 -13.00423 -12.81372 -12.24365 -12.21626 -12.02573 -11.87997 -11.71472 -11.34306 -11.04516 -10.92057 -10.78079 -10.63899 -10.45320 -10.22311 -10.13278 -9.92759 -9.84595 -9.65576 -9.58398 -9.00778 -8.46949 -8.41669 -7.60354 -6.03111 -4.07827 0.39334 1.04189 2.05542 3.32402 3.36822 3.39885 3.64762 3.87269 4.02317 4.20757 4.45240 4.59064 4.60761 4.69552 4.79638 4.80864 4.89943 4.96113 5.05657 5.12746 5.27266 5.30978 5.38496 5.59991 5.66862 5.74079 5.80583 5.83409 5.89787 5.91232 5.96920 6.01330 6.25135 6.30994 6.35347 6.39575 6.46957 6.52830 6.71137 7.12351 7.46186 7.55913 7.74358 7.93375 8.24788 8.42149 8.90337 9.08225 9.57055 11.04682 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012313 B = 0.004092 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.482927 B = 6841.685703 C = 8485.601574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.062 3.938 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.247 3.753 10 N -0.585 5.585 11 C 0.119 3.881 12 C -0.128 4.128 13 C -0.131 4.131 14 C -0.143 4.143 15 C -0.134 4.134 16 C 0.531 3.469 17 O -0.543 6.543 18 C -0.176 4.176 19 C -0.055 4.055 20 C -0.106 4.106 21 C -0.062 4.062 22 C -0.173 4.173 23 C 0.094 3.906 24 N -0.484 5.484 25 C 0.109 3.891 26 H 0.263 0.737 27 H 0.042 0.958 28 H 0.036 0.964 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.082 0.918 38 H 0.127 0.873 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.155 0.845 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 -17.625 0.796 19.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.140 4.140 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.075 0.925 9 C 0.128 3.872 10 N -0.315 5.315 11 C -0.005 4.005 12 C -0.148 4.148 13 C -0.168 4.168 14 C -0.181 4.181 15 C -0.172 4.172 16 C 0.320 3.680 17 O -0.423 6.423 18 C -0.196 4.196 19 C -0.076 4.076 20 C -0.108 4.108 21 C -0.087 4.087 22 C -0.192 4.192 23 C -0.063 4.063 24 N -0.192 5.192 25 C -0.048 4.048 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.103 0.897 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.100 0.900 38 H 0.144 0.856 39 H 0.155 0.845 40 H 0.157 0.843 41 H 0.154 0.846 42 H 0.172 0.828 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 9.099 -17.556 1.069 19.803 hybrid contribution 0.180 1.298 -0.768 1.519 sum 9.279 -16.258 0.302 18.722 Atomic orbital electron populations 1.69921 1.05954 1.27072 1.50398 1.24916 0.94861 0.99124 0.95097 0.86582 0.79544 0.82813 0.78625 1.20212 1.21188 1.20256 1.21411 0.93318 0.90716 1.51137 0.92547 1.19293 0.87426 0.81954 0.98518 1.48124 1.44989 1.34416 1.03945 1.21548 0.96093 0.95502 0.87364 1.23053 0.97413 0.97725 0.96596 1.22956 0.98377 0.97835 0.97650 1.22840 0.96724 0.98893 0.99628 1.22893 0.96664 1.00296 0.97362 1.18110 0.82181 0.83239 0.84498 1.90780 1.58649 1.61986 1.30880 1.23409 0.99427 0.98209 0.98604 1.22145 0.93328 0.92536 0.99587 1.20125 0.98675 0.97539 0.94492 1.21846 0.94438 0.94317 0.98143 1.22092 0.99261 0.98194 0.99695 1.22856 0.97363 0.98249 0.87807 1.67642 1.10515 1.09789 1.31214 1.23148 0.92391 0.91644 0.97642 0.92692 0.94002 0.94617 0.91521 0.89743 0.89488 0.89610 0.91598 0.90701 0.91787 0.91793 0.89973 0.85576 0.84465 0.84296 0.84597 0.82796 0.82334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.46 13.29 55.43 0.74 -25.73 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -14.88 9.39 -34.44 -0.32 -15.20 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.25 6.38 5.16 -5.19 -0.03 6.35 16 10 N -0.59 -12.19 2.46 -176.70 -0.43 -12.62 16 11 C 0.12 1.89 4.94 -4.04 -0.02 1.87 16 12 C -0.13 -1.74 3.96 -89.81 -0.36 -2.10 16 13 C -0.13 -1.85 7.13 -25.82 -0.18 -2.03 16 14 C -0.14 -1.61 8.09 -25.83 -0.21 -1.82 16 15 C -0.13 -1.46 7.65 -25.92 -0.20 -1.65 16 16 C 0.53 11.06 7.61 -12.97 -0.10 10.97 16 17 O -0.54 -13.69 15.81 5.20 0.08 -13.61 16 18 C -0.18 -2.69 8.62 -37.50 -0.32 -3.01 16 19 C -0.06 -0.77 9.48 -37.15 -0.35 -1.12 16 20 C -0.11 -1.25 5.88 -104.91 -0.62 -1.87 16 21 C -0.06 -0.61 9.95 -38.80 -0.39 -0.99 16 22 C -0.17 -1.44 10.09 -39.51 -0.40 -1.84 16 23 C 0.09 0.87 11.17 -17.45 -0.19 0.68 16 24 N -0.48 -5.67 10.34 -12.83 -0.13 -5.80 16 25 C 0.11 1.27 10.59 -17.04 -0.18 1.09 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 28 H 0.04 0.92 7.54 -51.93 -0.39 0.53 16 29 H 0.07 0.89 6.09 -51.93 -0.32 0.58 16 30 H 0.08 1.41 7.81 -51.93 -0.41 1.00 16 31 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.09 1.29 7.92 -51.93 -0.41 0.88 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.13 1.56 4.25 -52.49 -0.22 1.34 16 39 H 0.14 2.01 7.52 -52.49 -0.39 1.62 16 40 H 0.14 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.16 1.61 6.19 -52.48 -0.32 1.29 16 LS Contribution 361.75 15.07 5.45 5.45 Total: -1.00 -33.54 361.75 -9.48 -43.02 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.20 Total: 1.45 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -3.97 Total: -9.02 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.17 Total: -44.15 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: 0.08 Total: -13.61 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.54 -9.48 -43.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096425233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.557 kcal (2) G-P(sol) polarization free energy of solvation -33.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds