Wall clock time and date at job start Tue Mar 31 2020 04:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00097 * 2 1 4 4 H 1.48494 * 109.46968 * 239.99950 * 3 2 1 5 5 H 1.48498 * 109.46970 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47017 * 119.99852 * 3 2 1 7 7 C 1.37875 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99908 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.47188 * 179.97438 * 9 7 2 11 11 C 1.46505 * 119.99619 * 90.00204 * 10 9 7 12 12 C 1.52997 * 109.47212 * 89.99960 * 11 10 9 13 13 C 1.53785 * 113.61570 * 274.13670 * 12 11 10 14 14 C 1.53956 * 87.02052 * 220.04627 * 13 12 11 15 15 C 1.53777 * 87.11087 * 25.36196 * 14 13 12 16 16 C 1.34774 * 120.00119 * 270.00028 * 10 9 7 17 17 O 1.21689 * 120.00055 * 0.02562 * 16 10 9 18 18 C 1.46427 * 119.99550 * 179.97438 * 16 10 9 19 19 C 1.34811 * 119.99673 * 179.97438 * 18 16 10 20 20 C 1.47214 * 119.99770 * 180.02562 * 19 18 16 21 21 C 1.40266 * 120.58268 * 180.02562 * 20 19 18 22 22 C 1.38285 * 118.26694 * 179.97438 * 21 20 19 23 23 C 1.38395 * 119.33386 * 359.97438 * 22 21 20 24 24 N 1.31940 * 121.13637 * 0.02972 * 23 22 21 25 25 C 1.31662 * 121.90313 * 359.66949 * 24 23 22 26 26 H 0.97004 * 120.00297 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46741 * 59.99693 * 9 7 2 28 28 H 1.09003 * 109.46917 * 300.00358 * 9 7 2 29 29 H 1.09002 * 109.47068 * 210.00020 * 11 10 9 30 30 H 1.09001 * 109.47372 * 330.00108 * 11 10 9 31 31 H 1.09001 * 112.85054 * 45.33091 * 12 11 10 32 32 H 1.09000 * 113.61195 * 334.56762 * 13 12 11 33 33 H 1.09001 * 113.61520 * 105.46896 * 13 12 11 34 34 H 1.09005 * 113.53676 * 270.80967 * 14 13 12 35 35 H 1.08993 * 113.66514 * 139.93360 * 14 13 12 36 36 H 1.09011 * 113.61618 * 220.09268 * 15 14 13 37 37 H 1.09000 * 113.69499 * 89.19666 * 15 14 13 38 38 H 1.08002 * 120.00590 * 0.02562 * 18 16 10 39 39 H 1.07999 * 120.00175 * 0.02562 * 19 18 16 40 40 H 1.08002 * 120.86667 * 359.96269 * 21 20 19 41 41 H 1.07996 * 120.33112 * 180.02562 * 22 21 20 42 42 H 1.07996 * 119.43038 * 179.97438 * 23 22 21 43 43 H 1.08007 * 119.73337 * 180.29496 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2030 -3.6127 0.0015 11 6 2.6799 -4.1688 1.2702 12 6 1.7496 -5.2998 1.7130 13 6 0.5276 -4.8154 2.5112 14 6 0.7316 -6.0447 3.4154 15 6 2.2108 -6.0101 2.9966 16 6 2.6400 -4.1254 -1.1658 17 8 2.2442 -3.6631 -2.2196 18 6 3.5920 -5.2380 -1.1659 19 6 4.0288 -5.7512 -2.3335 20 6 4.9854 -6.8701 -2.3336 21 6 5.4483 -7.4132 -3.5412 22 6 6.3466 -8.4630 -3.4854 23 6 6.7569 -8.9395 -2.2526 24 7 6.3052 -8.4099 -1.1317 25 6 5.4537 -7.4057 -1.1303 26 1 -0.4851 0.8401 -0.0004 27 1 0.6240 -2.5574 -0.8880 28 1 0.6247 -2.5563 0.8920 29 1 3.6893 -4.5589 1.1393 30 1 2.6882 -3.3868 2.0295 31 1 1.4983 -5.9833 0.9020 32 1 0.6882 -3.8661 3.0222 33 1 -0.4025 -4.8395 1.9433 34 1 0.2007 -6.9319 3.0702 35 1 0.5726 -5.8403 4.4741 36 1 2.6379 -6.9974 2.8199 37 1 2.8338 -5.3885 3.6398 38 1 3.9436 -5.6480 -0.2307 39 1 3.6769 -5.3415 -3.2687 40 1 5.1117 -7.0217 -4.4898 41 1 6.7249 -8.9060 -4.3948 42 1 7.4581 -9.7596 -2.2072 43 1 5.1104 -6.9958 -0.1918 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096425233.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:38 Heat of formation + Delta-G solvation = 14.040008 kcal Electronic energy + Delta-G solvation = -23675.910138 eV Core-core repulsion = 20300.166998 eV Total energy + Delta-G solvation = -3375.743140 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19436 -40.74849 -39.40209 -36.44976 -35.51276 -34.67969 -33.22643 -31.16500 -29.99404 -28.48142 -26.49226 -26.02050 -24.72687 -24.34352 -23.83354 -21.78731 -20.24072 -19.63523 -18.71599 -18.51871 -17.82366 -17.42583 -16.77601 -16.39435 -16.25821 -16.00585 -15.81607 -15.10113 -14.88383 -14.81861 -14.56654 -14.26043 -14.02706 -13.98537 -13.41261 -13.22027 -13.12132 -13.09208 -12.76885 -12.68514 -12.59832 -12.30249 -12.05675 -11.89564 -11.78702 -11.47973 -11.22109 -11.02742 -10.70983 -10.63511 -10.60242 -10.42362 -9.56024 -9.26061 -8.21803 -6.37141 -0.55874 0.30305 0.97502 1.35532 1.39783 1.47194 2.26792 2.42325 2.46061 2.94781 3.06936 3.40111 3.56120 3.72415 3.81290 3.88282 3.91812 3.94823 4.04112 4.06893 4.15349 4.23341 4.50600 4.54961 4.59737 4.73099 4.83262 4.92899 4.95560 4.95893 5.00447 5.05904 5.13942 5.15023 5.20296 5.22140 5.34299 5.40101 5.42764 5.57453 5.67433 5.73320 5.88058 6.07000 6.69833 6.79086 6.97791 7.27344 7.46002 8.84574 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.012313 B = 0.004092 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.482927 B = 6841.685703 C = 8485.601574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.545 4.545 8 H 0.052 0.948 9 C 0.266 3.734 10 N -0.590 5.590 11 C 0.116 3.884 12 C -0.128 4.128 13 C -0.147 4.147 14 C -0.131 4.131 15 C -0.116 4.116 16 C 0.523 3.477 17 O -0.604 6.604 18 C -0.196 4.196 19 C -0.023 4.023 20 C -0.131 4.131 21 C -0.062 4.062 22 C -0.166 4.166 23 C 0.096 3.904 24 N -0.508 5.508 25 C 0.107 3.893 26 H 0.267 0.733 27 H -0.008 1.008 28 H 0.027 0.973 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.042 0.958 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.159 0.841 39 H 0.123 0.877 40 H 0.154 0.846 41 H 0.171 0.829 42 H 0.185 0.815 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.190 -19.840 1.384 23.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.190 4.190 3 Si 0.790 3.210 4 H -0.204 1.204 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.070 0.930 9 C 0.145 3.855 10 N -0.319 5.319 11 C -0.006 4.006 12 C -0.147 4.147 13 C -0.185 4.185 14 C -0.169 4.169 15 C -0.153 4.153 16 C 0.315 3.685 17 O -0.489 6.489 18 C -0.216 4.216 19 C -0.043 4.043 20 C -0.133 4.133 21 C -0.088 4.088 22 C -0.186 4.186 23 C -0.060 4.060 24 N -0.216 5.216 25 C -0.050 4.050 26 H 0.076 0.924 27 H 0.010 0.990 28 H 0.045 0.955 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.106 0.894 37 H 0.111 0.889 38 H 0.176 0.824 39 H 0.141 0.859 40 H 0.172 0.828 41 H 0.189 0.811 42 H 0.202 0.798 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 12.097 -19.806 1.705 23.271 hybrid contribution -0.693 1.846 -1.081 2.249 sum 11.404 -17.960 0.624 21.284 Atomic orbital electron populations 1.70048 1.07539 1.28180 1.50944 1.25841 0.95786 1.02961 0.94418 0.85495 0.78349 0.78156 0.78986 1.20383 1.20251 1.18426 1.21697 0.93235 0.92057 1.51357 0.92969 1.18697 0.87803 0.83472 0.95568 1.48093 1.44165 1.33413 1.06197 1.21836 0.98263 0.95837 0.84710 1.23024 0.96807 0.97103 0.97804 1.23010 0.97789 0.98889 0.98781 1.22803 0.97170 0.97251 0.99628 1.22840 0.96499 1.01121 0.94881 1.18984 0.82211 0.83955 0.83369 1.90731 1.61046 1.64271 1.32804 1.23071 1.00153 0.97748 1.00664 1.22215 0.91819 0.91834 0.98477 1.20002 0.99641 0.97815 0.95815 1.22177 0.94126 0.94357 0.98109 1.22461 0.98069 0.97162 1.00861 1.23499 0.96740 0.98203 0.87556 1.67710 1.11163 1.10236 1.32540 1.23309 0.92211 0.91604 0.97892 0.92414 0.98959 0.95492 0.88270 0.90866 0.89799 0.91184 0.93914 0.89715 0.90529 0.89421 0.88945 0.82354 0.85898 0.82788 0.81110 0.79763 0.81440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 2 C 0.01 0.53 5.46 84.65 0.46 0.99 16 3 Si 0.97 45.62 29.54 68.60 2.03 47.65 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.54 -32.15 9.39 25.60 0.24 -31.91 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 9 C 0.27 14.73 5.16 85.64 0.44 15.17 16 10 N -0.59 -25.90 2.46 -831.16 -2.04 -27.94 16 11 C 0.12 3.70 4.94 86.38 0.43 4.13 16 12 C -0.13 -3.43 3.96 -10.27 -0.04 -3.47 16 13 C -0.15 -4.30 7.13 31.18 0.22 -4.08 16 14 C -0.13 -2.73 8.09 31.18 0.25 -2.48 16 15 C -0.12 -2.20 7.65 31.12 0.24 -1.96 16 16 C 0.52 22.91 7.61 86.38 0.66 23.56 16 17 O -0.60 -32.66 15.81 -4.31 -0.07 -32.73 16 18 C -0.20 -5.99 8.62 23.62 0.20 -5.79 16 19 C -0.02 -0.62 9.48 23.84 0.23 -0.40 16 20 C -0.13 -2.83 5.88 -20.05 -0.12 -2.95 16 21 C -0.06 -1.05 9.95 22.77 0.23 -0.82 16 22 C -0.17 -2.11 10.09 22.32 0.23 -1.88 16 23 C 0.10 1.41 11.17 84.71 0.95 2.36 16 24 N -0.51 -10.38 10.34 -194.51 -2.01 -12.40 16 25 C 0.11 2.23 10.59 85.09 0.90 3.13 16 26 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 27 H -0.01 -0.50 7.42 -2.38 -0.02 -0.52 16 28 H 0.03 1.51 7.54 -2.39 -0.02 1.49 16 29 H 0.10 2.50 6.09 -2.39 -0.01 2.49 16 30 H 0.07 2.50 7.81 -2.39 -0.02 2.48 16 31 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.23 7.92 -2.39 -0.02 2.21 16 33 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 38 H 0.16 3.65 4.25 -2.91 -0.01 3.64 16 39 H 0.12 3.71 7.52 -2.91 -0.02 3.69 16 40 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 41 H 0.17 0.96 8.06 -2.91 -0.02 0.94 16 42 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 43 H 0.17 2.97 6.19 -2.91 -0.02 2.95 16 Total: -1.00 -78.28 361.75 4.70 -73.58 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.00 Total: 14.98 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 5.51 Total: -6.41 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -3.77 Total: -97.07 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.07 Total: -32.73 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -78.28 4.70 -73.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096425233.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.615 kcal (2) G-P(sol) polarization free energy of solvation -78.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds