Wall clock time and date at job start Tue Mar 31 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00071 * 2 1 4 4 H 1.48498 * 109.47218 * 185.00223 * 3 2 1 5 5 H 1.48499 * 109.47035 * 305.00592 * 3 2 1 6 6 H 1.48497 * 109.47153 * 65.00092 * 3 2 1 7 7 C 1.37872 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00186 * 185.12668 * 7 2 1 9 9 C 1.50704 * 119.99848 * 5.12411 * 7 2 1 10 10 N 1.46902 * 109.46680 * 185.11648 * 9 7 2 11 11 C 1.46905 * 110.99430 * 191.78159 * 10 9 7 12 12 C 1.52995 * 109.47175 * 75.98489 * 11 10 9 13 13 N 1.46900 * 109.47222 * 179.97438 * 12 11 10 14 14 C 1.47009 * 111.00438 * 293.63788 * 13 12 11 15 15 C 1.53098 * 109.26000 * 177.60569 * 14 13 12 16 16 O 1.43009 * 109.25659 * 56.84748 * 15 14 13 17 17 C 1.43009 * 113.74205 * 301.33051 * 16 15 14 18 18 C 1.47016 * 111.00294 * 170.00206 * 13 12 11 19 19 C 1.46896 * 111.00401 * 67.82957 * 10 9 7 20 20 C 1.52999 * 109.47285 * 198.55045 * 19 10 9 21 21 O 1.43756 * 109.62960 * 53.38092 * 20 19 10 22 22 C 1.44783 * 104.81343 * 215.80798 * 21 20 19 23 23 C 1.54911 * 101.72284 * 36.10346 * 22 21 20 24 24 O 1.43369 * 109.63252 * 294.01778 * 20 19 10 25 25 H 0.96999 * 119.99552 * 0.02562 * 1 2 3 26 26 H 1.08990 * 109.47120 * 65.11666 * 9 7 2 27 27 H 1.08997 * 109.47020 * 305.11265 * 9 7 2 28 28 H 1.09001 * 109.46865 * 195.98526 * 11 10 9 29 29 H 1.09002 * 109.47285 * 315.98533 * 11 10 9 30 30 H 1.08993 * 109.47379 * 300.00418 * 12 11 10 31 31 H 1.09002 * 109.46977 * 59.99856 * 12 11 10 32 32 H 1.08996 * 109.50921 * 297.54251 * 14 13 12 33 33 H 1.08999 * 109.50435 * 57.67171 * 14 13 12 34 34 H 1.09003 * 109.50294 * 296.91229 * 15 14 13 35 35 H 1.09003 * 109.54194 * 176.80790 * 15 14 13 36 36 H 1.09002 * 109.50665 * 298.73386 * 17 16 15 37 37 H 1.08998 * 109.54532 * 178.62937 * 17 16 15 38 38 H 1.09005 * 109.50482 * 302.33237 * 18 13 12 39 39 H 1.09000 * 109.50481 * 62.41045 * 18 13 12 40 40 H 1.08998 * 109.46818 * 318.55186 * 19 10 9 41 41 H 1.08998 * 109.47284 * 78.55086 * 19 10 9 42 42 H 1.09002 * 109.62705 * 173.62352 * 20 19 10 43 43 H 1.08999 * 110.97734 * 277.99706 * 22 21 20 44 44 H 1.08997 * 111.00903 * 154.22604 * 22 21 20 45 45 H 1.08996 * 110.69982 * 206.04358 * 23 22 21 46 46 H 1.09001 * 110.84432 * 82.90767 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7046 1.3491 -0.1221 5 1 1.8011 2.4480 -1.1468 6 1 1.9843 2.3423 1.2689 7 6 2.0046 -1.1940 0.0005 8 1 3.0813 -1.1958 0.0841 9 6 1.2555 -2.4966 -0.1155 10 7 2.1950 -3.6163 0.0318 11 6 1.5635 -4.8868 -0.3493 12 6 1.4737 -4.9745 -1.8741 13 7 0.8428 -6.2451 -2.2552 14 6 1.6969 -7.3863 -1.8956 15 6 0.9771 -8.6889 -2.2549 16 8 0.6471 -8.6770 -3.6463 17 6 -0.1845 -7.5791 -4.0314 18 6 0.5235 -6.2654 -3.6901 19 6 2.7257 -3.6818 1.4000 20 6 4.0039 -4.5227 1.4115 21 8 4.9260 -4.0132 0.4334 22 6 5.5878 -5.1862 -0.0979 23 6 4.4367 -6.2230 -0.1002 24 8 3.6887 -5.8826 1.0846 25 1 -0.4849 0.8401 -0.0004 26 1 0.7734 -2.5528 -1.0913 27 1 0.4991 -2.5516 0.6674 28 1 2.1608 -5.7169 0.0279 29 1 0.5616 -4.9368 0.0771 30 1 0.8765 -4.1443 -2.2513 31 1 2.4756 -4.9244 -2.3005 32 1 2.6360 -7.3257 -2.4456 33 1 1.8996 -7.3659 -0.8248 34 1 0.0646 -8.7751 -1.6650 35 1 1.6291 -9.5362 -2.0426 36 1 -1.1309 -7.6331 -3.4933 37 1 -0.3729 -7.6231 -5.1041 38 1 -0.1304 -5.4267 -3.9294 39 1 1.4437 -6.1859 -4.2689 40 1 2.9502 -2.6747 1.7512 41 1 1.9845 -4.1385 2.0558 42 1 4.4613 -4.4802 2.4000 43 1 6.3995 -5.5058 0.5555 44 1 5.9518 -5.0051 -1.1092 45 1 4.8311 -7.2366 -0.0287 46 1 3.8181 -6.1137 -0.9909 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182391023.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:50 Heat of formation + Delta-G solvation = -131.652233 kcal Electronic energy + Delta-G solvation = -26714.636065 eV Core-core repulsion = 23025.266316 eV Total energy + Delta-G solvation = -3689.369749 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48266 -40.48765 -38.33433 -36.60767 -35.90461 -34.64095 -32.35693 -31.92087 -30.69862 -29.21849 -27.98222 -26.20736 -25.06051 -24.29493 -24.02240 -22.83856 -21.53663 -21.24878 -18.63743 -18.38595 -17.69276 -17.40063 -17.11849 -16.97090 -16.58185 -16.28155 -16.03671 -15.95393 -15.83156 -15.43653 -15.14774 -14.72874 -14.53101 -14.23311 -13.94919 -13.79571 -13.63617 -13.27351 -13.24536 -13.05880 -12.76567 -12.65766 -12.50288 -12.40182 -12.29021 -12.22195 -12.08658 -11.65821 -11.44831 -11.23687 -10.99430 -10.69423 -10.62719 -10.26037 -9.41171 -8.98096 -8.19437 -6.28373 1.39245 1.40414 1.54657 2.39860 2.54778 2.62781 2.94768 3.11303 3.13720 3.39796 3.78832 3.87379 3.94560 3.98214 4.01748 4.12352 4.20885 4.22306 4.32052 4.33833 4.38594 4.43881 4.53194 4.57871 4.66980 4.70554 4.75367 4.76140 4.82124 4.85174 4.89286 4.95181 5.01727 5.08636 5.11314 5.21926 5.28416 5.67315 5.90405 5.98755 6.08618 6.16917 6.18537 6.33783 6.66555 6.89053 7.40991 8.91415 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.004986 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.333352 B = 5614.845369 C = 7135.410442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.210 3.790 10 N -0.523 5.523 11 C 0.045 3.955 12 C 0.081 3.919 13 N -0.547 5.547 14 C 0.017 3.983 15 C 0.065 3.935 16 O -0.400 6.400 17 C 0.069 3.931 18 C 0.017 3.983 19 C 0.046 3.954 20 C 0.247 3.753 21 O -0.383 6.383 22 C 0.014 3.986 23 C 0.016 3.984 24 O -0.391 6.391 25 H 0.263 0.737 26 H 0.002 0.998 27 H -0.040 1.040 28 H 0.115 0.885 29 H 0.004 0.996 30 H 0.047 0.953 31 H 0.034 0.966 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.122 0.878 36 H 0.059 0.941 37 H 0.119 0.881 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.129 0.871 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.650 -18.080 -3.291 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.194 4.194 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.079 0.921 9 C 0.084 3.916 10 N -0.248 5.248 11 C -0.083 4.083 12 C -0.047 4.047 13 N -0.273 5.273 14 C -0.111 4.111 15 C -0.012 4.012 16 O -0.318 6.318 17 C -0.008 4.008 18 C -0.111 4.111 19 C -0.083 4.083 20 C 0.152 3.848 21 O -0.303 6.303 22 C -0.062 4.062 23 C -0.060 4.060 24 O -0.313 6.313 25 H 0.072 0.928 26 H 0.020 0.980 27 H -0.022 1.022 28 H 0.132 0.868 29 H 0.023 0.977 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.140 0.860 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.100 0.900 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.058 0.942 42 H 0.121 0.879 43 H 0.113 0.887 44 H 0.131 0.869 45 H 0.147 0.853 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.416 -17.972 -3.424 19.741 hybrid contribution -0.164 1.580 0.276 1.612 sum 7.251 -16.393 -3.148 18.199 Atomic orbital electron populations 1.70109 1.07699 1.27692 1.52057 1.25869 0.95628 1.03015 0.94937 0.85390 0.78967 0.78841 0.77743 1.18967 1.20495 1.20291 1.21448 0.93756 0.91078 1.49107 0.92144 1.19401 0.89663 0.89010 0.93564 1.61876 1.36869 1.02884 1.23159 1.22495 0.96999 0.93780 0.94978 1.21783 0.96623 0.90408 0.95894 1.62116 1.45271 1.02577 1.17324 1.22932 0.94885 0.91233 1.02052 1.22796 0.99895 0.96771 0.81732 1.87933 1.70197 1.47773 1.25934 1.22728 0.92696 0.83619 1.01775 1.22828 1.00414 1.00266 0.87628 1.22466 0.95243 1.00307 0.90269 1.24101 0.88501 0.79363 0.92837 1.89368 1.53905 1.29909 1.57104 1.24529 0.95853 0.84032 1.01823 1.24416 0.92220 1.01114 0.88218 1.88766 1.68708 1.28346 1.45482 0.92787 0.97955 1.02249 0.86763 0.97738 0.93395 0.94757 0.93830 0.89336 0.92390 0.86015 0.92264 0.86329 0.89975 0.94172 0.90435 0.94224 0.87888 0.88744 0.86908 0.85300 0.91675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.28 21.45 0.28 -57.05 16 2 C 0.00 0.19 5.45 84.65 0.46 0.65 16 3 Si 0.97 45.34 29.54 68.60 2.03 47.36 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.52 -29.94 8.16 25.60 0.21 -29.73 16 8 H 0.06 3.52 7.61 -2.91 -0.02 3.50 16 9 C 0.21 11.55 4.56 85.56 0.39 11.94 16 10 N -0.52 -23.34 4.09 -900.81 -3.68 -27.03 16 11 C 0.05 1.74 4.22 86.30 0.36 2.11 16 12 C 0.08 2.88 4.73 86.30 0.41 3.29 16 13 N -0.55 -15.92 4.73 -895.25 -4.23 -20.15 16 14 C 0.02 0.39 4.50 86.32 0.39 0.78 16 15 C 0.06 1.28 7.01 72.01 0.50 1.79 16 16 O -0.40 -9.11 10.83 -148.98 -1.61 -10.72 16 17 C 0.07 1.43 7.01 72.01 0.50 1.94 16 18 C 0.02 0.42 5.64 86.31 0.49 0.91 16 19 C 0.05 1.86 5.13 86.30 0.44 2.30 16 20 C 0.25 7.87 4.33 71.98 0.31 8.18 16 21 O -0.38 -12.87 11.09 -126.22 -1.40 -14.27 16 22 C 0.01 0.30 7.95 72.64 0.58 0.88 16 23 C 0.02 0.34 7.30 72.64 0.53 0.87 16 24 O -0.39 -10.97 8.83 -126.22 -1.11 -12.08 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H 0.00 0.14 6.61 -2.39 -0.02 0.13 16 27 H -0.04 -2.45 8.09 -2.39 -0.02 -2.47 16 28 H 0.11 3.84 2.10 -2.39 -0.01 3.83 16 29 H 0.00 0.18 8.00 -2.39 -0.02 0.17 16 30 H 0.05 1.98 6.68 -2.39 -0.02 1.97 16 31 H 0.03 1.22 7.57 -2.39 -0.02 1.20 16 32 H 0.04 0.99 7.77 -2.39 -0.02 0.97 16 33 H 0.09 2.08 6.11 -2.39 -0.01 2.06 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.08 2.12 8.09 -2.38 -0.02 2.10 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.08 3.48 6.81 -2.39 -0.02 3.47 16 41 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 42 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.13 1.79 8.14 -2.39 -0.02 1.78 16 46 H 0.07 1.58 4.62 -2.39 -0.01 1.57 16 Total: -1.00 -70.51 349.35 -3.19 -73.70 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.96 Total: 14.32 kcal Atomic # 6 Polarization: 0.34 SS G_CDS: 5.58 Total: 5.92 kcal Atomic # 7 Polarization: -96.60 SS G_CDS: -7.63 Total: -104.22 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -4.13 Total: -37.08 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -70.51 -3.19 -73.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182391023.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.952 kcal (2) G-P(sol) polarization free energy of solvation -70.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds