Wall clock time and date at job start Tue Mar 31 2020 03:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99803 * 2 1 4 4 C 1.38217 * 119.99950 * 180.24928 * 3 2 1 5 5 C 1.38262 * 119.99901 * 359.77302 * 4 3 2 6 6 C 1.38211 * 119.99762 * 0.02562 * 5 4 3 7 7 C 1.38211 * 120.00202 * 179.78804 * 2 1 3 8 8 C 1.50699 * 119.99824 * 359.97438 * 7 2 1 9 9 H 1.09007 * 115.54860 * 31.05087 * 8 7 2 10 10 C 1.53001 * 117.49863 * 176.75611 * 8 7 2 11 11 C 1.52995 * 117.50143 * 245.37792 * 8 7 2 12 12 H 1.08994 * 117.50182 * 144.99629 * 11 8 7 13 13 C 1.50699 * 117.49887 * 0.02562 * 11 8 7 14 14 O 1.20836 * 119.99752 * 23.58776 * 13 11 8 15 15 O 1.34232 * 120.00553 * 203.58813 * 13 11 8 16 16 C 1.45192 * 117.00300 * 184.83813 * 15 13 11 17 17 C 1.50700 * 112.84959 * 61.39963 * 16 15 13 18 18 H 1.07996 * 120.00289 * 234.21060 * 17 16 15 19 19 C 1.37882 * 119.99737 * 54.21022 * 17 16 15 20 20 N 1.31516 * 119.99925 * 8.45143 * 19 17 16 21 21 Si 1.86803 * 119.99998 * 188.44441 * 19 17 16 22 22 H 1.48502 * 109.47234 * 184.99571 * 21 19 17 23 23 H 1.48505 * 109.47127 * 304.99835 * 21 19 17 24 24 H 1.48500 * 109.46737 * 64.99400 * 21 19 17 25 25 C 1.53780 * 113.69341 * 192.66940 * 16 15 13 26 26 C 1.53781 * 87.08217 * 89.12884 * 25 16 15 27 27 C 1.53779 * 87.07963 * 25.43631 * 26 25 16 28 28 H 1.08997 * 109.47153 * 270.20778 * 1 2 3 29 29 H 1.09002 * 109.47419 * 30.20962 * 1 2 3 30 30 H 1.08998 * 109.46878 * 150.21028 * 1 2 3 31 31 H 1.08001 * 120.00493 * 0.03972 * 3 2 1 32 32 H 1.08001 * 120.00125 * 179.78533 * 4 3 2 33 33 H 1.07995 * 120.00220 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.00141 * 179.97438 * 6 5 4 35 35 H 1.08993 * 117.49830 * 0.02562 * 10 8 7 36 36 H 1.09003 * 117.49612 * 214.98221 * 10 8 7 37 37 H 0.97000 * 119.99481 * 174.98549 * 20 19 17 38 38 H 1.08997 * 113.61867 * 203.68102 * 25 16 15 39 39 H 1.09001 * 113.61149 * 334.58196 * 25 16 15 40 40 H 1.09002 * 113.61109 * 270.88728 * 26 25 16 41 41 H 1.09000 * 113.61321 * 139.98773 * 26 25 16 42 42 H 1.09003 * 113.60967 * 220.02000 * 27 26 25 43 43 H 1.08995 * 113.61767 * 89.11382 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0052 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0015 7 6 2.1981 -1.1969 0.0044 8 6 1.4446 -2.5020 0.0098 9 1 0.4797 -2.4898 -0.4971 10 6 2.2648 -3.7916 -0.0622 11 6 1.5815 -3.3917 1.2470 12 1 0.7067 -3.9648 1.5540 13 6 2.4590 -2.8956 2.3671 14 8 2.6751 -1.7128 2.4868 15 8 3.0007 -3.7676 3.2320 16 6 3.7456 -3.2128 4.3480 17 6 2.8983 -2.3472 5.2445 18 1 3.2050 -1.3355 5.4654 19 6 1.7313 -2.8468 5.7828 20 7 1.4408 -4.1229 5.6529 21 14 0.5632 -1.7113 6.6968 22 1 -0.5475 -2.5074 7.2781 23 1 1.2975 -1.0176 7.7853 24 1 0.0109 -0.7060 5.7536 25 6 4.5841 -4.2530 5.1094 26 6 5.7231 -3.9398 4.1247 27 6 5.0749 -2.5580 3.9368 28 1 -0.3633 0.0037 1.0276 29 1 -0.3634 0.8881 -0.5171 30 1 -0.3633 -0.8919 -0.5106 31 1 1.6583 2.1327 0.0006 32 1 4.1204 2.1327 -0.0087 33 1 5.3517 0.0000 -0.0102 34 1 4.1206 -2.1322 -0.0022 35 1 3.3493 -3.6960 -0.1131 36 1 1.8396 -4.6281 -0.6168 37 1 0.6577 -4.4892 6.0928 38 1 4.8052 -3.9676 6.1378 39 1 4.2007 -5.2698 5.0244 40 1 5.7052 -4.5564 3.2261 41 1 6.7067 -3.9008 4.5930 42 1 5.0877 -2.2065 2.9051 43 1 5.4301 -1.8092 4.6447 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225857927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:13 Heat of formation + Delta-G solvation = -6.664604 kcal Electronic energy + Delta-G solvation = -25519.471924 eV Core-core repulsion = 22110.538214 eV Total energy + Delta-G solvation = -3408.933711 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.07659 -38.89565 -37.29683 -35.70814 -33.92738 -32.51809 -32.31094 -30.23461 -26.65839 -26.51339 -24.63053 -24.47051 -23.65505 -22.32218 -21.13211 -20.45116 -19.25515 -18.05578 -17.24346 -16.44901 -15.69780 -15.19643 -14.95341 -14.77373 -14.50613 -14.32884 -14.05048 -13.70990 -13.42930 -13.07194 -12.94721 -12.68789 -12.11354 -11.95588 -11.80561 -11.64066 -11.49748 -11.22723 -11.13544 -10.89394 -10.78468 -10.61009 -10.47067 -10.37922 -10.19483 -9.99408 -9.93304 -9.85510 -9.15521 -8.89966 -8.46061 -8.35078 -8.23658 -7.94795 -6.05111 -4.13703 1.73528 1.81299 3.29496 3.33774 3.37925 3.40257 3.85893 4.02862 4.32509 4.40258 4.85168 5.02113 5.14532 5.17631 5.22812 5.27207 5.30462 5.43857 5.54261 5.72749 5.75261 5.78703 5.83179 5.86816 5.91846 5.96313 6.06297 6.13580 6.23007 6.31258 6.42305 6.45223 6.48985 6.52145 6.84605 6.85099 6.86561 6.89353 7.03139 7.20109 7.28706 7.41706 7.58795 7.81029 7.97542 8.39188 8.84941 9.31240 9.55283 10.98699 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.006343 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.986829 B = 4412.916544 C = 4996.958849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.075 4.075 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.120 4.120 6 C -0.095 4.095 7 C -0.025 4.025 8 C -0.096 4.096 9 H 0.121 0.879 10 C -0.156 4.156 11 C -0.141 4.141 12 H 0.131 0.869 13 C 0.486 3.514 14 O -0.485 6.485 15 O -0.331 6.331 16 C 0.241 3.759 17 C -0.522 4.522 18 H 0.063 0.937 19 C 0.077 3.923 20 N -0.865 5.865 21 Si 0.886 3.114 22 H -0.287 1.287 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.100 4.100 26 C -0.153 4.153 27 C -0.151 4.151 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.262 0.738 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.249 2.687 -12.422 12.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.075 4.075 3 C -0.138 4.138 4 C -0.142 4.142 5 C -0.138 4.138 6 C -0.113 4.113 7 C -0.025 4.025 8 C -0.114 4.114 9 H 0.139 0.861 10 C -0.193 4.193 11 C -0.160 4.160 12 H 0.149 0.851 13 C 0.326 3.674 14 O -0.372 6.372 15 O -0.247 6.247 16 C 0.206 3.794 17 C -0.559 4.559 18 H 0.082 0.918 19 C -0.128 4.128 20 N -0.501 5.501 21 Si 0.713 3.287 22 H -0.212 1.212 23 H -0.200 1.200 24 H -0.201 1.201 25 C -0.138 4.138 26 C -0.190 4.190 27 C -0.189 4.189 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.071 0.929 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.191 2.900 -12.354 12.745 hybrid contribution -0.754 0.601 0.846 1.282 sum 0.437 3.500 -11.508 12.037 Atomic orbital electron populations 1.20792 0.91850 1.01860 1.02477 1.19496 0.95551 0.92479 0.99994 1.20827 0.94225 0.96933 1.01862 1.20942 0.94259 0.97590 1.01409 1.20906 0.99220 0.92570 1.01065 1.20797 0.93553 0.97734 0.99186 1.18645 0.92937 0.92237 0.98647 1.21170 1.00486 0.89380 1.00315 0.86148 1.23129 0.99926 0.97881 0.98346 1.21950 1.01861 1.04158 0.88063 0.85110 1.21708 0.78594 0.85169 0.81884 1.90630 1.57170 1.17404 1.72003 1.86356 1.62712 1.40294 1.35328 1.20419 0.86284 0.90889 0.81795 1.21146 1.06801 0.99403 1.28566 0.91843 1.25025 0.97376 0.94930 0.95501 1.70020 1.26932 1.11506 1.41632 0.86753 0.80766 0.81205 0.79978 1.21229 1.19987 1.20065 1.22814 0.93633 0.99919 0.97429 1.22998 0.97670 0.98426 0.99943 1.23438 0.99171 0.95809 1.00478 0.91052 0.92191 0.91703 0.86787 0.86858 0.86849 0.87019 0.88117 0.87582 0.92855 0.89995 0.92022 0.91483 0.93058 0.92948 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 9.60 36.01 0.35 -1.17 16 2 C -0.08 -1.20 5.88 -104.63 -0.62 -1.82 16 3 C -0.12 -1.84 9.70 -39.58 -0.38 -2.22 16 4 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 5 C -0.12 -1.88 10.05 -39.58 -0.40 -2.28 16 6 C -0.09 -1.59 7.52 -39.58 -0.30 -1.89 16 7 C -0.02 -0.41 3.83 -104.63 -0.40 -0.81 16 8 C -0.10 -1.44 5.42 -91.77 -0.50 -1.93 16 9 H 0.12 1.50 6.41 -51.92 -0.33 1.17 16 10 C -0.16 -2.17 9.58 -26.73 -0.26 -2.42 16 11 C -0.14 -2.53 6.29 -91.78 -0.58 -3.11 16 12 H 0.13 2.24 8.14 -51.93 -0.42 1.81 16 13 C 0.49 11.19 6.63 36.00 0.24 11.43 16 14 O -0.49 -12.08 11.69 -18.76 -0.22 -12.30 16 15 O -0.33 -8.34 9.60 -39.26 -0.38 -8.72 16 16 C 0.24 6.09 0.34 -90.96 -0.03 6.06 16 17 C -0.52 -14.63 7.29 -34.44 -0.25 -14.88 16 18 H 0.06 1.83 7.83 -52.49 -0.41 1.42 16 19 C 0.08 2.15 5.37 -17.82 -0.10 2.06 16 20 N -0.86 -24.52 12.84 55.43 0.71 -23.81 16 21 Si 0.89 21.84 29.55 -169.99 -5.02 16.82 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 25 C -0.10 -2.31 7.36 -25.92 -0.19 -2.50 16 26 C -0.15 -3.03 8.03 -25.92 -0.21 -3.23 16 27 C -0.15 -3.38 6.90 -25.92 -0.18 -3.56 16 28 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.06 0.76 6.13 -51.93 -0.32 0.44 16 31 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 32 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.11 1.80 5.94 -52.49 -0.31 1.48 16 35 H 0.10 1.42 6.09 -51.93 -0.32 1.10 16 36 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 38 H 0.08 1.87 8.09 -51.93 -0.42 1.45 16 39 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.05 1.17 7.40 -51.93 -0.38 0.79 16 43 H 0.08 1.70 8.09 -51.93 -0.42 1.28 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -31.63 350.25 -10.10 -41.72 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.27 Total: 5.55 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: -4.19 Total: -24.54 kcal Atomic # 7 Polarization: -24.52 SS G_CDS: 0.71 Total: -23.81 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.60 Total: -21.02 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.63 -10.10 -41.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225857927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.060 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds