Wall clock time and date at job start Tue Mar 31 2020 03:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38256 * 119.99803 * 2 1 4 4 C 1.38217 * 119.99950 * 180.24928 * 3 2 1 5 5 C 1.38262 * 119.99901 * 359.77302 * 4 3 2 6 6 C 1.38211 * 119.99762 * 0.02562 * 5 4 3 7 7 C 1.38211 * 120.00202 * 179.78804 * 2 1 3 8 8 C 1.50699 * 119.99824 * 359.97438 * 7 2 1 9 9 H 1.09007 * 115.54860 * 31.05087 * 8 7 2 10 10 C 1.53001 * 117.49863 * 176.75611 * 8 7 2 11 11 C 1.52995 * 117.50143 * 245.37792 * 8 7 2 12 12 H 1.08994 * 117.50182 * 144.99629 * 11 8 7 13 13 C 1.50699 * 117.49887 * 0.02562 * 11 8 7 14 14 O 1.20836 * 119.99752 * 23.58776 * 13 11 8 15 15 O 1.34232 * 120.00553 * 203.58813 * 13 11 8 16 16 C 1.45192 * 117.00300 * 184.83813 * 15 13 11 17 17 C 1.50700 * 112.84959 * 61.39963 * 16 15 13 18 18 H 1.07996 * 120.00289 * 234.21060 * 17 16 15 19 19 C 1.37882 * 119.99737 * 54.21022 * 17 16 15 20 20 N 1.31516 * 119.99925 * 8.45143 * 19 17 16 21 21 Si 1.86803 * 119.99998 * 188.44441 * 19 17 16 22 22 H 1.48502 * 109.47234 * 184.99571 * 21 19 17 23 23 H 1.48505 * 109.47127 * 304.99835 * 21 19 17 24 24 H 1.48500 * 109.46737 * 64.99400 * 21 19 17 25 25 C 1.53780 * 113.69341 * 192.66940 * 16 15 13 26 26 C 1.53781 * 87.08217 * 89.12884 * 25 16 15 27 27 C 1.53779 * 87.07963 * 25.43631 * 26 25 16 28 28 H 1.08997 * 109.47153 * 270.20778 * 1 2 3 29 29 H 1.09002 * 109.47419 * 30.20962 * 1 2 3 30 30 H 1.08998 * 109.46878 * 150.21028 * 1 2 3 31 31 H 1.08001 * 120.00493 * 0.03972 * 3 2 1 32 32 H 1.08001 * 120.00125 * 179.78533 * 4 3 2 33 33 H 1.07995 * 120.00220 * 179.97438 * 5 4 3 34 34 H 1.08001 * 120.00141 * 179.97438 * 6 5 4 35 35 H 1.08993 * 117.49830 * 0.02562 * 10 8 7 36 36 H 1.09003 * 117.49612 * 214.98221 * 10 8 7 37 37 H 0.97000 * 119.99481 * 174.98549 * 20 19 17 38 38 H 1.08997 * 113.61867 * 203.68102 * 25 16 15 39 39 H 1.09001 * 113.61149 * 334.58196 * 25 16 15 40 40 H 1.09002 * 113.61109 * 270.88728 * 26 25 16 41 41 H 1.09000 * 113.61321 * 139.98773 * 26 25 16 42 42 H 1.09003 * 113.60967 * 220.02000 * 27 26 25 43 43 H 1.08995 * 113.61767 * 89.11382 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 -0.0052 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1969 -0.0015 7 6 2.1981 -1.1969 0.0044 8 6 1.4446 -2.5020 0.0098 9 1 0.4797 -2.4898 -0.4971 10 6 2.2648 -3.7916 -0.0622 11 6 1.5815 -3.3917 1.2470 12 1 0.7067 -3.9648 1.5540 13 6 2.4590 -2.8956 2.3671 14 8 2.6751 -1.7128 2.4868 15 8 3.0007 -3.7676 3.2320 16 6 3.7456 -3.2128 4.3480 17 6 2.8983 -2.3472 5.2445 18 1 3.2050 -1.3355 5.4654 19 6 1.7313 -2.8468 5.7828 20 7 1.4408 -4.1229 5.6529 21 14 0.5632 -1.7113 6.6968 22 1 -0.5475 -2.5074 7.2781 23 1 1.2975 -1.0176 7.7853 24 1 0.0109 -0.7060 5.7536 25 6 4.5841 -4.2530 5.1094 26 6 5.7231 -3.9398 4.1247 27 6 5.0749 -2.5580 3.9368 28 1 -0.3633 0.0037 1.0276 29 1 -0.3634 0.8881 -0.5171 30 1 -0.3633 -0.8919 -0.5106 31 1 1.6583 2.1327 0.0006 32 1 4.1204 2.1327 -0.0087 33 1 5.3517 0.0000 -0.0102 34 1 4.1206 -2.1322 -0.0022 35 1 3.3493 -3.6960 -0.1131 36 1 1.8396 -4.6281 -0.6168 37 1 0.6577 -4.4892 6.0928 38 1 4.8052 -3.9676 6.1378 39 1 4.2007 -5.2698 5.0244 40 1 5.7052 -4.5564 3.2261 41 1 6.7067 -3.9008 4.5930 42 1 5.0877 -2.2065 2.9051 43 1 5.4301 -1.8092 4.6447 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225857927.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:12 Heat of formation + Delta-G solvation = -21.188839 kcal Electronic energy + Delta-G solvation = -25520.101743 eV Core-core repulsion = 22110.538214 eV Total energy + Delta-G solvation = -3409.563529 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.56031 -40.42453 -38.84961 -37.16525 -35.77344 -34.43538 -33.64748 -31.43001 -28.56352 -27.72691 -26.37138 -26.13687 -24.83532 -24.10518 -22.31752 -21.81278 -20.70186 -19.87750 -19.02693 -17.98947 -17.02765 -16.87146 -16.64660 -16.55964 -16.14700 -15.74140 -15.46861 -15.28138 -14.75061 -14.53120 -14.43619 -13.90594 -13.62917 -13.42617 -13.16449 -13.13711 -13.01665 -12.96157 -12.88565 -12.74094 -12.35962 -11.97976 -11.92298 -11.82218 -11.74448 -11.67894 -11.58398 -11.32658 -10.97869 -10.82207 -10.40878 -10.23827 -9.49887 -9.20288 -8.17124 -6.31128 0.53397 0.61037 1.30125 1.33644 1.40536 1.73154 2.28661 2.35928 2.70183 3.09450 3.11398 3.64723 3.84998 3.86279 3.98450 3.99308 4.05826 4.12276 4.17355 4.20160 4.33802 4.46680 4.47720 4.66227 4.72246 4.78608 4.83545 4.84820 4.87662 4.92193 5.01763 5.03860 5.10327 5.12974 5.27159 5.35748 5.37123 5.51340 5.65066 5.67076 5.70211 5.75724 5.84078 6.00802 6.26027 6.49404 6.68104 7.33483 7.55819 8.85632 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.013589 B = 0.006343 C = 0.005602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.986829 B = 4412.916544 C = 4996.958849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.133 4.133 4 C -0.131 4.131 5 C -0.136 4.136 6 C -0.112 4.112 7 C -0.046 4.046 8 C -0.085 4.085 9 H 0.150 0.850 10 C -0.128 4.128 11 C -0.173 4.173 12 H 0.136 0.864 13 C 0.476 3.524 14 O -0.512 6.512 15 O -0.346 6.346 16 C 0.219 3.781 17 C -0.539 4.539 18 H 0.042 0.958 19 C 0.039 3.961 20 N -0.885 5.885 21 Si 0.935 3.065 22 H -0.274 1.274 23 H -0.268 1.268 24 H -0.286 1.286 25 C -0.102 4.102 26 C -0.125 4.125 27 C -0.147 4.147 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.144 0.856 37 H 0.264 0.736 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 2.666 -13.751 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.130 4.130 7 C -0.046 4.046 8 C -0.103 4.103 9 H 0.167 0.833 10 C -0.164 4.164 11 C -0.192 4.192 12 H 0.154 0.846 13 C 0.319 3.681 14 O -0.400 6.400 15 O -0.263 6.263 16 C 0.185 3.815 17 C -0.577 4.577 18 H 0.060 0.940 19 C -0.165 4.165 20 N -0.522 5.522 21 Si 0.761 3.239 22 H -0.199 1.199 23 H -0.192 1.192 24 H -0.212 1.212 25 C -0.140 4.140 26 C -0.163 4.163 27 C -0.184 4.184 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.128 0.872 35 H 0.115 0.885 36 H 0.162 0.838 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.068 0.932 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.010 2.871 -13.682 14.016 hybrid contribution -0.667 0.680 1.236 1.561 sum 0.343 3.552 -12.445 12.947 Atomic orbital electron populations 1.20815 0.90208 1.03908 1.01789 1.19921 0.97055 0.92625 0.99734 1.21214 0.94655 0.97789 1.01425 1.21299 0.94609 0.98373 1.00649 1.21211 1.00215 0.92781 1.01200 1.20966 0.94069 0.98112 0.99885 1.18943 0.93200 0.93324 0.99146 1.21362 1.01899 0.89057 0.97946 0.83259 1.23315 0.99826 0.98514 0.94790 1.21947 1.02084 1.07258 0.87901 0.84627 1.22645 0.78396 0.84842 0.82256 1.90597 1.58209 1.18433 1.72785 1.86336 1.63255 1.41064 1.35601 1.20597 0.86891 0.91882 0.82177 1.21312 1.07890 0.98865 1.29600 0.93958 1.25577 0.98432 0.96081 0.96369 1.70087 1.27346 1.12385 1.42363 0.85978 0.79426 0.79566 0.78941 1.19869 1.19249 1.21193 1.22770 0.94877 0.98520 0.97826 1.22849 0.97975 0.96039 0.99402 1.23343 0.98161 0.97119 0.99824 0.92906 0.89922 0.90033 0.84667 0.84513 0.85457 0.87175 0.88510 0.83758 0.92724 0.90519 0.93217 0.90336 0.89776 0.93570 0.90850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.78 9.60 71.24 0.68 -2.10 16 2 C -0.09 -2.90 5.88 -19.87 -0.12 -3.02 16 3 C -0.13 -3.91 9.70 22.27 0.22 -3.70 16 4 C -0.13 -3.83 10.05 22.27 0.22 -3.61 16 5 C -0.14 -4.25 10.05 22.27 0.22 -4.02 16 6 C -0.11 -3.75 7.52 22.27 0.17 -3.58 16 7 C -0.05 -1.50 3.83 -19.87 -0.08 -1.58 16 8 C -0.09 -2.41 5.42 -11.54 -0.06 -2.47 16 9 H 0.15 3.26 6.41 -2.38 -0.02 3.25 16 10 C -0.13 -3.27 9.58 30.59 0.29 -2.98 16 11 C -0.17 -6.06 6.29 -11.54 -0.07 -6.13 16 12 H 0.14 4.55 8.14 -2.39 -0.02 4.53 16 13 C 0.48 22.18 6.63 71.24 0.47 22.65 16 14 O -0.51 -26.03 11.69 21.93 0.26 -25.77 16 15 O -0.35 -17.70 9.60 -51.44 -0.49 -18.19 16 16 C 0.22 11.26 0.34 -11.01 0.00 11.26 16 17 C -0.54 -30.97 7.29 25.60 0.19 -30.78 16 18 H 0.04 2.53 7.83 -2.91 -0.02 2.51 16 19 C 0.04 2.18 5.37 84.66 0.46 2.64 16 20 N -0.88 -50.79 12.84 21.45 0.28 -50.52 16 21 Si 0.94 45.35 29.55 68.60 2.03 47.38 16 22 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 23 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 25 C -0.10 -4.71 7.36 31.12 0.23 -4.48 16 26 C -0.13 -4.77 8.03 31.12 0.25 -4.52 16 27 C -0.15 -6.56 6.90 31.12 0.21 -6.34 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.65 8.09 -2.39 -0.02 1.63 16 30 H 0.08 1.72 6.13 -2.39 -0.01 1.70 16 31 H 0.14 3.25 8.06 -2.91 -0.02 3.22 16 32 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 33 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 34 H 0.11 3.55 5.94 -2.91 -0.02 3.53 16 35 H 0.10 2.57 6.09 -2.39 -0.01 2.56 16 36 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.26 14.39 8.32 -92.71 -0.77 13.62 16 38 H 0.08 3.54 8.09 -2.39 -0.02 3.52 16 39 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 41 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.05 2.08 7.40 -2.39 -0.02 2.07 16 43 H 0.07 3.27 8.09 -2.39 -0.02 3.25 16 Total: -1.00 -69.70 350.25 6.35 -63.35 By element: Atomic # 1 Polarization: 25.50 SS G_CDS: 1.00 Total: 26.50 kcal Atomic # 6 Polarization: -46.03 SS G_CDS: 3.28 Total: -42.75 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: 0.28 Total: -50.52 kcal Atomic # 8 Polarization: -43.73 SS G_CDS: -0.24 Total: -43.96 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -69.70 6.35 -63.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225857927.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.158 kcal (2) G-P(sol) polarization free energy of solvation -69.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds