Wall clock time and date at job start Tue Mar 31 2020 03:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38257 * 119.99976 * 2 1 4 4 C 1.38216 * 119.99601 * 180.22974 * 3 2 1 5 5 C 1.38251 * 120.00069 * 359.81635 * 4 3 2 6 6 C 1.38211 * 120.00261 * 359.97438 * 5 4 3 7 7 C 1.38213 * 119.99761 * 179.81278 * 2 1 3 8 8 C 1.50702 * 120.00351 * 359.97438 * 7 2 1 9 9 H 1.08999 * 115.56007 * 331.03893 * 8 7 2 10 10 C 1.53072 * 117.51530 * 185.33694 * 8 7 2 11 11 C 1.52995 * 117.49856 * 116.72573 * 8 7 2 12 12 H 1.08995 * 117.50317 * 215.00593 * 11 8 7 13 13 C 1.50708 * 117.49998 * 0.02562 * 11 8 7 14 14 O 1.20827 * 119.99858 * 326.01779 * 13 11 8 15 15 O 1.34227 * 119.99651 * 146.01347 * 13 11 8 16 16 C 1.45208 * 116.99344 * 177.16314 * 15 13 11 17 17 C 1.50706 * 112.90706 * 291.76203 * 16 15 13 18 18 H 1.07998 * 119.99563 * 127.87308 * 17 16 15 19 19 C 1.37870 * 119.99777 * 307.87494 * 17 16 15 20 20 N 1.31516 * 120.00692 * 2.69292 * 19 17 16 21 21 Si 1.86810 * 119.99658 * 182.69559 * 19 17 16 22 22 H 1.48493 * 109.47229 * 94.97051 * 21 19 17 23 23 H 1.48496 * 109.46720 * 214.97640 * 21 19 17 24 24 H 1.48503 * 109.46699 * 334.97273 * 21 19 17 25 25 C 1.53774 * 113.61739 * 63.01898 * 16 15 13 26 26 C 1.53780 * 87.08294 * 89.11242 * 25 16 15 27 27 C 1.53778 * 87.17015 * 25.39042 * 26 25 16 28 28 H 1.09001 * 109.47488 * 270.19009 * 1 2 3 29 29 H 1.09004 * 109.47051 * 30.19291 * 1 2 3 30 30 H 1.09004 * 109.47071 * 150.18454 * 1 2 3 31 31 H 1.08001 * 120.00093 * 0.02562 * 3 2 1 32 32 H 1.08004 * 119.99727 * 179.78500 * 4 3 2 33 33 H 1.08005 * 119.99648 * 179.97438 * 5 4 3 34 34 H 1.08003 * 120.00072 * 179.97438 * 6 5 4 35 35 H 1.08996 * 117.49530 * 145.03974 * 10 8 7 36 36 H 1.09004 * 117.51206 * 0.02562 * 10 8 7 37 37 H 0.96995 * 120.00096 * 185.01568 * 20 19 17 38 38 H 1.09002 * 113.61404 * 334.56760 * 25 16 15 39 39 H 1.08997 * 113.61795 * 203.66530 * 25 16 15 40 40 H 1.09000 * 113.61188 * 139.98210 * 26 25 16 41 41 H 1.08998 * 113.61548 * 270.79969 * 26 25 16 42 42 H 1.09008 * 113.61244 * 89.15942 * 27 26 25 43 43 H 1.09000 * 113.61438 * 220.05273 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2716 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0014 7 6 2.1980 -1.1970 0.0039 8 6 1.4445 -2.5021 0.0088 9 1 0.4645 -2.4776 0.4852 10 6 2.2616 -3.7899 0.1392 11 6 1.6194 -3.4233 -1.2002 12 1 0.7544 -4.0045 -1.5195 13 6 2.5325 -2.9563 -2.3046 14 8 2.6080 -1.7798 -2.5691 15 8 3.2618 -3.8475 -2.9941 16 6 4.0709 -3.3339 -4.0851 17 6 3.2453 -2.8267 -5.2394 18 1 3.4153 -1.8342 -5.6298 19 6 2.2730 -3.6297 -5.7968 20 7 2.0298 -4.8177 -5.2878 21 14 1.3012 -3.0303 -7.2753 22 1 1.9327 -3.5356 -8.5207 23 1 -0.0932 -3.5333 -7.1879 24 1 1.2917 -1.5454 -7.2924 25 6 5.1647 -2.3526 -3.6320 26 6 6.0802 -3.5759 -3.4582 27 6 5.2068 -4.2832 -4.5078 28 1 -0.3634 0.0034 1.0276 29 1 -0.3633 0.8883 -0.5168 30 1 -0.3633 -0.8917 -0.5110 31 1 1.6583 2.1327 0.0004 32 1 4.1205 2.1326 -0.0083 33 1 5.3517 0.0000 -0.0099 34 1 4.1206 -2.1323 -0.0026 35 1 1.8188 -4.6121 0.7013 36 1 3.3442 -3.6932 0.2220 37 1 1.3981 -5.4116 -5.7227 38 1 4.9341 -1.8435 -2.6961 39 1 5.4917 -1.6704 -4.4166 40 1 7.1052 -3.4044 -3.7869 41 1 6.0233 -4.0267 -2.4674 42 1 5.5454 -4.1298 -5.5326 43 1 5.0102 -5.3304 -4.2783 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225857974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:35:21 Heat of formation + Delta-G solvation = -22.978249 kcal Electronic energy + Delta-G solvation = -25507.955190 eV Core-core repulsion = 22098.314067 eV Total energy + Delta-G solvation = -3409.641123 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.151 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.57123 -40.41706 -38.83161 -37.16890 -35.76462 -34.43029 -33.65005 -31.43171 -28.56825 -27.72317 -26.38033 -26.12065 -24.81847 -24.10657 -22.32880 -21.82591 -20.69821 -19.85505 -19.00608 -17.98530 -17.04324 -16.86055 -16.64921 -16.58517 -16.14799 -15.72554 -15.46388 -15.28809 -14.65951 -14.56514 -14.42414 -13.90504 -13.60249 -13.41785 -13.24473 -13.12422 -13.00523 -12.92430 -12.81770 -12.72453 -12.35182 -11.99270 -11.89089 -11.85893 -11.79509 -11.69287 -11.57798 -11.34602 -10.94563 -10.79261 -10.40514 -10.23584 -9.53325 -9.23396 -8.14792 -6.33001 0.50885 0.59331 1.31988 1.34474 1.44437 1.77680 2.28514 2.36750 2.67985 3.10358 3.12715 3.62258 3.85257 3.86805 3.97459 3.98564 4.05593 4.11824 4.17837 4.21018 4.34376 4.47776 4.49060 4.66120 4.72438 4.77552 4.84038 4.84490 4.88343 4.93172 5.02250 5.03031 5.12206 5.13258 5.25942 5.30975 5.37481 5.49593 5.65146 5.66277 5.69192 5.74022 5.82343 6.03268 6.24144 6.47806 6.68938 7.33851 7.57313 8.87602 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.005864 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.342252 B = 4773.553991 C = 5216.104085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.090 4.090 3 C -0.132 4.132 4 C -0.130 4.130 5 C -0.136 4.136 6 C -0.118 4.118 7 C -0.051 4.051 8 C -0.083 4.083 9 H 0.149 0.851 10 C -0.132 4.132 11 C -0.171 4.171 12 H 0.137 0.863 13 C 0.480 3.520 14 O -0.522 6.522 15 O -0.336 6.336 16 C 0.218 3.782 17 C -0.543 4.543 18 H 0.044 0.956 19 C 0.035 3.965 20 N -0.884 5.884 21 Si 0.940 3.060 22 H -0.266 1.266 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.150 4.150 26 C -0.124 4.124 27 C -0.109 4.109 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.096 0.904 37 H 0.262 0.738 38 H 0.050 0.950 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.190 4.613 13.579 14.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.090 4.090 3 C -0.150 4.150 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.136 4.136 7 C -0.051 4.051 8 C -0.100 4.100 9 H 0.167 0.833 10 C -0.168 4.168 11 C -0.190 4.190 12 H 0.154 0.846 13 C 0.323 3.677 14 O -0.411 6.411 15 O -0.252 6.252 16 C 0.183 3.817 17 C -0.581 4.581 18 H 0.062 0.938 19 C -0.168 4.168 20 N -0.521 5.521 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.187 4.187 26 C -0.162 4.162 27 C -0.147 4.147 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.156 0.844 32 H 0.156 0.844 33 H 0.145 0.855 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.104 4.806 13.486 14.317 hybrid contribution -0.521 0.232 -1.501 1.606 sum -0.417 5.037 11.985 13.007 Atomic orbital electron populations 1.20818 0.89955 1.02886 1.03115 1.19955 0.97227 0.92468 0.99315 1.21240 0.94582 0.97863 1.01276 1.21324 0.94681 0.98342 1.00416 1.21218 1.00270 0.92758 1.01177 1.20996 0.94194 0.98142 1.00310 1.18988 0.93109 0.93424 0.99598 1.21357 1.01746 0.88695 0.98233 0.83332 1.23316 1.00114 0.98602 0.94767 1.21939 1.01603 1.07126 0.88357 0.84558 1.22606 0.78925 0.84417 0.81709 1.90566 1.64252 1.19476 1.66800 1.86376 1.54438 1.41149 1.43227 1.20697 0.86596 0.91633 0.82750 1.21435 1.19929 1.00737 1.15975 0.93808 1.25648 0.96753 0.95336 0.99048 1.70149 1.34861 1.08431 1.38701 0.85822 0.78524 0.78348 0.80719 1.19056 1.20572 1.20509 1.23370 0.97997 0.97069 1.00296 1.22821 0.98197 0.96168 0.98977 1.22891 0.95028 0.98254 0.98511 0.89097 0.91245 0.92050 0.84389 0.84355 0.85467 0.87408 0.83986 0.88582 0.92840 0.93144 0.91000 0.89726 0.90482 0.90155 0.93122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.63 9.33 71.24 0.66 -1.97 16 2 C -0.09 -2.68 5.88 -19.87 -0.12 -2.80 16 3 C -0.13 -3.71 9.70 22.27 0.22 -3.49 16 4 C -0.13 -3.66 10.05 22.27 0.22 -3.43 16 5 C -0.14 -4.19 10.05 22.27 0.22 -3.97 16 6 C -0.12 -3.94 7.63 22.27 0.17 -3.77 16 7 C -0.05 -1.65 3.98 -19.87 -0.08 -1.73 16 8 C -0.08 -2.35 5.05 -11.52 -0.06 -2.41 16 9 H 0.15 3.28 7.06 -2.39 -0.02 3.26 16 10 C -0.13 -3.48 9.58 30.62 0.29 -3.18 16 11 C -0.17 -6.11 6.27 -11.54 -0.07 -6.18 16 12 H 0.14 4.68 8.14 -2.39 -0.02 4.66 16 13 C 0.48 22.59 6.24 71.24 0.44 23.03 16 14 O -0.52 -26.84 12.21 21.96 0.27 -26.57 16 15 O -0.34 -17.31 9.18 -51.39 -0.47 -17.78 16 16 C 0.22 11.23 0.44 -10.96 0.00 11.23 16 17 C -0.54 -31.28 7.73 25.60 0.20 -31.08 16 18 H 0.04 2.62 7.81 -2.91 -0.02 2.60 16 19 C 0.04 1.99 5.42 84.65 0.46 2.45 16 20 N -0.88 -50.87 12.57 21.44 0.27 -50.60 16 21 Si 0.94 44.94 29.54 68.60 2.03 46.97 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 24 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 25 C -0.15 -6.74 6.81 31.12 0.21 -6.53 16 26 C -0.12 -4.72 8.02 31.12 0.25 -4.47 16 27 C -0.11 -4.97 7.48 31.18 0.23 -4.73 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 1.53 8.09 -2.38 -0.02 1.51 16 30 H 0.06 1.54 6.71 -2.38 -0.02 1.53 16 31 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 32 H 0.14 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 34 H 0.11 3.56 5.97 -2.91 -0.02 3.54 16 35 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.10 2.65 6.13 -2.38 -0.01 2.64 16 37 H 0.26 14.29 8.32 -92.71 -0.77 13.52 16 38 H 0.05 2.32 6.88 -2.39 -0.02 2.31 16 39 H 0.07 3.23 8.09 -2.39 -0.02 3.21 16 40 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 42 H 0.08 3.61 8.10 -2.38 -0.02 3.59 16 43 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 Total: -1.00 -70.02 350.68 6.35 -63.67 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 1.00 Total: 27.36 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 3.26 Total: -43.04 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: 0.27 Total: -50.60 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -0.20 Total: -44.35 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -70.02 6.35 -63.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225857974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.688 kcal (2) G-P(sol) polarization free energy of solvation -70.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds