Wall clock time and date at job start Tue Mar 31 2020 04:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40355 * 119.99881 * 2 1 4 4 N 1.31503 * 120.00157 * 359.97438 * 3 2 1 5 5 N 1.40094 * 120.00128 * 180.02562 * 4 3 2 6 6 C 1.34777 * 120.00352 * 180.02562 * 5 4 3 7 7 O 1.22090 * 119.99763 * 0.02562 * 6 5 4 8 8 C 1.39818 * 120.00145 * 179.97438 * 6 5 4 9 9 H 1.08001 * 120.00079 * 0.02562 * 8 6 5 10 10 C 1.40102 * 119.99930 * 180.02562 * 8 6 5 11 11 N 1.30671 * 119.99858 * 359.97438 * 10 8 6 12 12 Si 1.86797 * 119.99803 * 180.02562 * 10 8 6 13 13 H 1.48499 * 109.46885 * 90.00087 * 12 10 8 14 14 H 1.48501 * 109.46811 * 209.99622 * 12 10 8 15 15 H 1.48501 * 109.47305 * 329.99836 * 12 10 8 16 16 C 1.36492 * 119.99719 * 179.97438 * 2 1 3 17 17 C 1.46522 * 120.00231 * 352.95400 * 16 2 1 18 18 C 1.40306 * 120.20557 * 143.76077 * 17 16 2 19 19 C 1.37740 * 119.78336 * 179.97438 * 18 17 16 20 20 C 1.38546 * 120.21073 * 0.27566 * 19 18 17 21 21 C 1.50702 * 119.78849 * 179.72754 * 20 19 18 22 22 C 1.53004 * 109.47110 * 119.99944 * 21 20 19 23 23 C 1.53005 * 109.46868 * 239.99674 * 21 20 19 24 24 C 1.38555 * 120.42238 * 359.44182 * 20 19 18 25 25 C 1.37733 * 120.20846 * 0.55981 * 24 20 19 26 26 H 1.09005 * 109.47201 * 266.53698 * 1 2 3 27 27 H 1.08994 * 109.47431 * 26.53327 * 1 2 3 28 28 H 1.08999 * 109.47249 * 146.53820 * 1 2 3 29 29 H 1.08001 * 119.99843 * 179.97438 * 3 2 1 30 30 H 0.97002 * 119.99942 * 359.97438 * 5 4 3 31 31 H 0.96997 * 119.99727 * 180.02562 * 11 10 8 32 32 H 1.08003 * 119.99812 * 172.95501 * 16 2 1 33 33 H 1.08002 * 120.11411 * 359.97438 * 18 17 16 34 34 H 1.08001 * 119.89605 * 179.97438 * 19 18 17 35 35 H 1.09002 * 109.46852 * 359.97438 * 21 20 19 36 36 H 1.08998 * 109.47119 * 60.00042 * 22 21 20 37 37 H 1.08999 * 109.47019 * 180.02562 * 22 21 20 38 38 H 1.08998 * 109.47098 * 299.99543 * 22 21 20 39 39 H 1.08995 * 109.46900 * 60.00018 * 23 21 20 40 40 H 1.08999 * 109.46707 * 179.97438 * 23 21 20 41 41 H 1.09002 * 109.46811 * 299.99883 * 23 21 20 42 42 H 1.07998 * 119.89333 * 180.25927 * 24 20 19 43 43 H 1.08000 * 120.10897 * 179.74592 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2088 1.2155 0.0000 4 7 1.5512 2.3544 -0.0005 5 7 2.2517 3.5676 -0.0011 6 6 1.5779 4.7349 -0.0011 7 8 0.3570 4.7349 -0.0001 8 6 2.2770 5.9457 -0.0011 9 1 3.3570 5.9457 -0.0015 10 6 1.5765 7.1590 -0.0005 11 7 0.2698 7.1590 -0.0005 12 14 2.5105 8.7767 -0.0012 13 1 2.7569 9.2053 -1.4015 14 1 1.7085 9.8117 0.6994 15 1 3.8086 8.5992 0.6978 16 6 2.1894 -1.1821 0.0005 17 6 1.4651 -2.4461 0.1567 18 6 1.8838 -3.5903 -0.5391 19 6 1.1968 -4.7742 -0.3854 20 6 0.0922 -4.8360 0.4486 21 6 -0.6561 -6.1347 0.6050 22 6 -0.6267 -6.5668 2.0725 23 6 -2.1070 -5.9443 0.1584 24 6 -0.3253 -3.7129 1.1444 25 6 0.3488 -2.5201 1.0036 26 1 -0.3634 -0.0621 1.0258 27 1 -0.3634 0.9194 -0.4590 28 1 -0.3634 -0.8573 -0.5666 29 1 3.2888 1.2155 0.0004 30 1 3.2217 3.5676 -0.0007 31 1 -0.2152 7.9991 -0.0005 32 1 3.2633 -1.1857 -0.1142 33 1 2.7419 -3.5429 -1.1932 34 1 1.5172 -5.6559 -0.9205 35 1 -0.1848 -6.9018 -0.0095 36 1 -1.0982 -5.7995 2.6866 37 1 -1.1675 -7.5063 2.1855 38 1 0.4069 -6.7025 2.3907 39 1 -2.1279 -5.6365 -0.8870 40 1 -2.6481 -6.8837 0.2711 41 1 -2.5785 -5.1770 0.7726 42 1 -1.1849 -3.7718 1.7955 43 1 0.0195 -1.6447 1.5436 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252629406.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:17:58 Heat of formation + Delta-G solvation = 26.152038 kcal Electronic energy + Delta-G solvation = -22375.657095 eV Core-core repulsion = 19000.439172 eV Total energy + Delta-G solvation = -3375.217923 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.68929 -37.83251 -36.86014 -35.43914 -33.84926 -32.59065 -31.04945 -30.75197 -29.01122 -27.39460 -27.09365 -26.58891 -23.98418 -22.58589 -21.76280 -20.20559 -19.79114 -18.52560 -17.21731 -16.52326 -16.25073 -15.62617 -15.28696 -15.07821 -14.62473 -14.06835 -13.93727 -13.91010 -13.64756 -13.63193 -13.23614 -12.80200 -12.66194 -12.57324 -12.40629 -12.16448 -11.64851 -11.52174 -11.48549 -11.40386 -11.32044 -11.24006 -10.98427 -10.75846 -10.69721 -10.61914 -10.40926 -9.55799 -9.46374 -9.02603 -8.92322 -8.30457 -7.81322 -7.05627 -6.44705 -5.01762 0.77015 1.44158 1.87423 3.01230 3.08001 3.12163 3.37245 3.71910 3.85511 4.07493 4.39225 4.47682 4.58611 4.93384 4.95174 4.97463 5.06134 5.13872 5.20716 5.36166 5.37368 5.40759 5.50243 5.57210 5.65729 5.71290 5.72125 5.85241 5.93946 5.96724 5.97729 6.01598 6.06111 6.15448 6.25669 6.42337 6.47253 6.57544 6.60199 6.84835 7.02264 7.05337 7.15634 7.80428 7.92352 8.59349 8.70758 9.23754 10.33479 10.59308 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.041983 B = 0.002080 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.778632 B =13460.420522 C =13868.399393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.021 4.021 3 C -0.003 4.003 4 N -0.172 5.172 5 N -0.584 5.584 6 C 0.554 3.446 7 O -0.554 6.554 8 C -0.534 4.534 9 H 0.071 0.929 10 C 0.087 3.913 11 N -0.741 5.741 12 Si 0.918 3.082 13 H -0.269 1.269 14 H -0.276 1.276 15 H -0.262 1.262 16 C -0.145 4.145 17 C -0.038 4.038 18 C -0.112 4.112 19 C -0.120 4.120 20 C -0.086 4.086 21 C -0.056 4.056 22 C -0.144 4.144 23 C -0.145 4.145 24 C -0.115 4.115 25 C -0.112 4.112 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.370 0.630 31 H 0.275 0.725 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.117 0.883 35 H 0.074 0.926 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.118 0.882 43 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.064 -23.545 1.150 23.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.023 4.023 3 C -0.208 4.208 4 N 0.016 4.984 5 N -0.330 5.330 6 C 0.364 3.636 7 O -0.434 6.434 8 C -0.570 4.570 9 H 0.089 0.911 10 C -0.137 4.137 11 N -0.368 5.368 12 Si 0.742 3.258 13 H -0.194 1.194 14 H -0.201 1.201 15 H -0.186 1.186 16 C -0.171 4.171 17 C -0.038 4.038 18 C -0.131 4.131 19 C -0.138 4.138 20 C -0.086 4.086 21 C -0.075 4.075 22 C -0.201 4.201 23 C -0.202 4.202 24 C -0.133 4.133 25 C -0.130 4.130 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.120 0.880 30 H 0.205 0.795 31 H 0.086 0.914 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.136 0.864 43 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.124 -22.716 1.152 22.746 hybrid contribution 2.049 0.576 -0.049 2.129 sum 2.173 -22.140 1.103 22.274 Atomic orbital electron populations 1.21020 0.91504 1.03257 1.01974 1.19416 0.95768 0.90757 0.96403 1.22807 0.97120 0.91489 1.09352 1.75281 1.27479 0.92855 1.02790 1.48209 1.07593 1.02175 1.74990 1.16595 0.87941 0.80358 0.78721 1.90763 1.13293 1.85266 1.54039 1.19574 0.94615 0.89824 1.53028 0.91059 1.25777 0.94715 1.00787 0.92446 1.70049 1.07362 1.28147 1.31219 0.86189 0.80107 0.80342 0.79157 1.19369 1.20069 1.18607 1.21951 0.98533 0.90043 1.06544 1.19003 0.95148 0.93227 0.96450 1.21347 1.00139 0.92235 0.99339 1.20897 0.95875 0.97715 0.99295 1.19937 0.96063 0.95060 0.97572 1.20116 0.95722 0.94274 0.97345 1.21860 1.01924 1.01063 0.95277 1.21863 0.95057 1.01650 1.01608 1.20867 1.00106 0.92402 0.99936 1.21745 0.95018 0.97997 0.98245 0.91215 0.90278 0.91635 0.87975 0.79482 0.91391 0.86093 0.86074 0.86520 0.90755 0.92381 0.92593 0.92591 0.92512 0.92591 0.92353 0.86371 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 8.00 36.01 0.29 -1.56 16 2 C -0.02 -0.32 5.78 -104.46 -0.60 -0.93 16 3 C 0.00 -0.05 10.42 -16.90 -0.18 -0.23 16 4 N -0.17 -3.86 9.99 30.84 0.31 -3.56 16 5 N -0.58 -14.00 6.26 28.75 0.18 -13.82 16 6 C 0.55 16.11 7.62 -15.67 -0.12 15.99 16 7 O -0.55 -18.48 15.17 4.84 0.07 -18.41 16 8 C -0.53 -14.70 9.21 -38.29 -0.35 -15.06 16 9 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 10 C 0.09 2.34 5.49 -17.35 -0.10 2.25 16 11 N -0.74 -21.56 11.69 55.55 0.65 -20.92 16 12 Si 0.92 19.20 29.56 -169.99 -5.02 14.18 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 15 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 16 C -0.15 -1.85 9.50 -36.88 -0.35 -2.20 16 17 C -0.04 -0.46 5.20 -105.00 -0.55 -1.01 16 18 C -0.11 -1.20 9.81 -38.99 -0.38 -1.58 16 19 C -0.12 -1.18 9.65 -39.65 -0.38 -1.56 16 20 C -0.09 -0.84 4.80 -104.39 -0.50 -1.34 16 21 C -0.06 -0.43 3.09 -91.77 -0.28 -0.71 16 22 C -0.14 -1.00 9.00 37.16 0.33 -0.66 16 23 C -0.14 -1.04 9.01 37.16 0.33 -0.71 16 24 C -0.12 -1.20 8.68 -39.65 -0.34 -1.54 16 25 C -0.11 -1.31 7.83 -38.99 -0.31 -1.62 16 26 H 0.07 0.99 6.53 -51.93 -0.34 0.65 16 27 H 0.08 1.43 7.39 -51.93 -0.38 1.05 16 28 H 0.06 0.90 6.65 -51.93 -0.35 0.55 16 29 H 0.10 1.51 8.04 -52.49 -0.42 1.09 16 30 H 0.37 7.44 8.62 -182.60 -1.57 5.87 16 31 H 0.28 7.15 8.29 -40.82 -0.34 6.81 16 32 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 33 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.12 0.91 7.93 -52.49 -0.42 0.50 16 35 H 0.07 0.52 7.86 -51.93 -0.41 0.11 16 36 H 0.06 0.41 7.35 -51.93 -0.38 0.03 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.06 0.43 7.39 -51.93 -0.38 0.05 16 42 H 0.12 1.06 7.07 -52.49 -0.37 0.69 16 43 H 0.13 1.53 5.44 -52.49 -0.29 1.25 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -34.11 362.18 -9.23 -43.34 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.39 Total: 6.19 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -3.48 Total: -12.46 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 1.14 Total: -38.29 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.07 Total: -18.41 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.11 -9.23 -43.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252629406.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.492 kcal (2) G-P(sol) polarization free energy of solvation -34.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds