Wall clock time and date at job start Tue Mar 31 2020 04:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42896 * 114.00095 * 2 1 4 4 C 1.50703 * 113.25956 * 281.08883 * 3 2 1 5 5 C 1.38233 * 119.99776 * 177.51748 * 4 3 2 6 6 C 1.38240 * 119.99680 * 179.74468 * 5 4 3 7 7 C 1.38235 * 119.99751 * 0.52695 * 6 5 4 8 8 C 1.38232 * 120.00040 * 359.74348 * 7 6 5 9 9 C 1.38234 * 119.99670 * 357.78259 * 4 3 2 10 10 C 1.53510 * 114.16952 * 54.03943 * 3 2 1 11 11 N 1.47480 * 87.93497 * 87.62139 * 10 3 2 12 12 C 1.46900 * 111.00327 * 138.70164 * 11 10 3 13 13 C 1.53001 * 109.46937 * 170.00033 * 12 11 10 14 14 H 1.08997 * 109.47218 * 305.00234 * 13 12 11 15 15 C 1.47204 * 109.46943 * 65.00576 * 13 12 11 16 16 N 5.41548 * 149.64980 * 72.19197 * 2 1 3 17 17 C 1.53004 * 109.46836 * 185.00397 * 13 12 11 18 18 C 1.50701 * 109.47058 * 175.00128 * 17 13 12 19 19 H 1.07995 * 120.00069 * 0.02562 * 18 17 13 20 20 C 1.37874 * 119.99799 * 179.97438 * 18 17 13 21 21 N 1.31513 * 120.00219 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99937 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47132 * 90.00028 * 22 20 18 24 24 H 1.48503 * 109.47106 * 210.00124 * 22 20 18 25 25 H 1.48501 * 109.46946 * 329.99939 * 22 20 18 26 26 C 1.47479 * 87.83418 * 27.01028 * 11 10 3 27 27 H 1.09000 * 109.46788 * 294.63622 * 1 2 3 28 28 H 1.08994 * 109.47683 * 54.63384 * 1 2 3 29 29 H 1.09004 * 109.47671 * 174.63729 * 1 2 3 30 30 H 1.08003 * 120.00437 * 359.97438 * 5 4 3 31 31 H 1.07998 * 120.00186 * 180.28761 * 6 5 4 32 32 H 1.08003 * 119.99457 * 179.77120 * 7 6 5 33 33 H 1.08001 * 119.99927 * 180.02562 * 8 7 6 34 34 H 1.07995 * 120.00468 * 0.02562 * 9 4 3 35 35 H 1.09001 * 113.47812 * 332.85763 * 10 3 2 36 36 H 1.08995 * 113.47984 * 202.38400 * 10 3 2 37 37 H 1.08998 * 109.46850 * 50.00567 * 12 11 10 38 38 H 1.08997 * 109.47286 * 290.00570 * 12 11 10 39 39 H 1.09002 * 109.46954 * 294.99860 * 17 13 12 40 40 H 1.08997 * 109.47713 * 54.99935 * 17 13 12 41 41 H 0.96999 * 119.99948 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.47602 * 87.75661 * 26 11 10 43 43 H 1.09000 * 113.47811 * 218.21999 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.0090 1.9574 -1.3587 5 6 2.4919 3.2440 -1.5083 6 6 2.4956 3.8401 -2.7556 7 6 2.0064 3.1536 -3.8512 8 6 1.5184 1.8691 -3.7005 9 6 1.5199 1.2708 -2.4543 10 6 1.5145 2.2141 1.1336 11 7 2.5844 1.6529 1.9794 12 6 3.2224 2.7015 2.7863 13 6 4.1450 2.0570 3.8228 14 1 3.5798 1.3368 4.4144 15 6 5.2497 1.3683 3.1356 16 7 6.1022 0.8369 2.6052 17 6 4.7127 3.1393 4.7433 18 6 5.5225 2.4937 5.8380 19 1 5.6226 1.4190 5.8735 20 6 6.1365 3.2751 6.7937 21 7 6.0158 4.5840 6.7497 22 14 7.1409 2.4749 8.1503 23 1 8.5525 2.3425 7.7087 24 1 7.0813 3.3164 9.3724 25 1 6.5872 1.1295 8.4482 26 6 3.3494 1.3972 0.7447 27 1 -0.3633 0.4284 0.9341 28 1 -0.3634 0.5948 -0.8380 29 1 -0.3634 -1.0232 -0.0960 30 1 2.8696 3.7821 -0.6515 31 1 2.8772 4.8435 -2.8734 32 1 2.0060 3.6207 -4.8249 33 1 1.1366 1.3326 -4.5565 34 1 1.1383 0.2674 -2.3365 35 1 0.5115 1.9669 1.4813 36 1 1.6388 3.2766 0.9244 37 1 2.4555 3.2851 3.2956 38 1 3.8053 3.3551 2.1375 39 1 5.3505 3.8090 4.1663 40 1 3.8938 3.7077 5.1841 41 1 6.4475 5.1337 7.4223 42 1 3.9634 2.2416 0.4316 43 1 3.9015 0.4575 0.7627 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253417191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:55 Heat of formation + Delta-G solvation = 46.664435 kcal Electronic energy + Delta-G solvation = -23881.958883 eV Core-core repulsion = 20507.630444 eV Total energy + Delta-G solvation = -3374.328439 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.28665 -38.79693 -37.20299 -35.96019 -33.83813 -32.40496 -31.37446 -31.06839 -28.54202 -27.29048 -25.75564 -25.46960 -23.39470 -22.84722 -21.75687 -21.46412 -19.60926 -17.87930 -16.77564 -16.62242 -16.37069 -15.81608 -15.64275 -15.15649 -14.89839 -14.56557 -14.34638 -14.24413 -13.89937 -13.45827 -13.36962 -12.94312 -12.72322 -12.47650 -12.47054 -12.21358 -12.03231 -11.88793 -11.54451 -11.41516 -11.16075 -11.09412 -10.94513 -10.74363 -10.68255 -10.47308 -10.24557 -9.82393 -9.48364 -9.23429 -9.13278 -8.89682 -8.84320 -8.45331 -6.09650 -4.12490 1.06922 1.18015 3.30408 3.33525 3.36843 3.40753 3.54908 3.64263 3.72994 3.93621 4.22868 4.41404 4.46583 4.70125 4.78372 4.80776 4.88819 4.99521 5.10510 5.17225 5.21527 5.26788 5.28603 5.32197 5.36993 5.40145 5.51161 5.63658 5.65938 5.74641 5.79879 5.82791 6.01130 6.23219 6.28527 6.28724 6.31982 6.38219 6.54563 6.75640 7.01646 7.05673 7.42204 7.52233 7.85877 8.23485 8.48635 8.92170 9.53049 11.01295 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.025060 B = 0.003094 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.054758 B = 9048.672915 C = 9445.931213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.343 6.343 3 C 0.124 3.876 4 C -0.093 4.093 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.122 4.122 8 C -0.121 4.121 9 C -0.104 4.104 10 C -0.021 4.021 11 N -0.459 5.459 12 C 0.025 3.975 13 C 0.014 3.986 14 H 0.110 0.890 15 C 0.246 3.754 16 N -0.477 5.477 17 C 0.032 3.968 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.285 1.285 25 H -0.272 1.272 26 C 0.019 3.981 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.024 0.976 40 H 0.039 0.961 41 H 0.262 0.738 42 H 0.084 0.916 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.673 -1.680 -18.931 24.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.261 6.261 3 C 0.083 3.917 4 C -0.093 4.093 5 C -0.128 4.128 6 C -0.135 4.135 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.122 4.122 10 C -0.150 4.150 11 N -0.180 5.180 12 C -0.104 4.104 13 C -0.008 4.008 14 H 0.127 0.873 15 C -0.071 4.071 16 N -0.154 5.154 17 C -0.007 4.007 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.531 5.531 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.110 4.110 27 H 0.067 0.933 28 H 0.061 0.939 29 H 0.106 0.894 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -13.354 -3.023 -19.109 23.508 hybrid contribution 0.393 0.817 0.564 1.068 sum -12.962 -2.206 -18.544 22.732 Atomic orbital electron populations 1.22841 0.81110 1.02718 1.00543 1.87958 1.19661 1.24005 1.94472 1.21257 0.96445 0.84349 0.89645 1.20078 0.99633 0.94560 0.95077 1.20980 0.99622 0.94399 0.97844 1.21132 0.99715 1.00083 0.92584 1.21181 0.98984 0.95059 0.98755 1.21161 1.00112 0.95435 0.97229 1.21054 0.99088 1.00039 0.92051 1.24539 0.99207 0.98391 0.92890 1.69028 1.05981 1.32171 1.10848 1.22872 0.97915 0.93147 0.96483 1.19191 0.88595 0.98745 0.94254 0.87267 1.29160 0.93715 0.92289 0.91890 1.81013 1.11532 1.11083 1.11783 1.19177 0.96748 0.91890 0.92849 1.21146 1.31433 0.93304 1.10449 0.92470 1.24949 0.96299 0.94790 0.97928 1.69935 1.44032 1.03722 1.35441 0.86592 0.80647 0.79458 0.81396 1.20668 1.21090 1.19689 1.24123 0.94165 1.03557 0.89153 0.93253 0.93860 0.89434 0.85943 0.85825 0.86126 0.86068 0.85523 0.88752 0.90027 0.88758 0.93062 0.95797 0.94326 0.92815 0.89838 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.89 101.05 1.00 1.22 16 2 O -0.34 -4.32 9.78 -35.23 -0.34 -4.67 16 3 C 0.12 1.49 1.33 -91.24 -0.12 1.37 16 4 C -0.09 -1.02 5.23 -104.62 -0.55 -1.57 16 5 C -0.11 -1.13 8.45 -39.58 -0.33 -1.47 16 6 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 7 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 8 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 9 C -0.10 -1.07 8.49 -39.58 -0.34 -1.40 16 10 C -0.02 -0.24 6.59 -7.55 -0.05 -0.29 16 11 N -0.46 -6.43 6.22 -244.64 -1.52 -7.95 16 12 C 0.03 0.37 4.36 -3.82 -0.02 0.36 16 13 C 0.01 0.27 2.42 -93.40 -0.23 0.04 16 14 H 0.11 2.02 8.14 -51.93 -0.42 1.60 16 15 C 0.25 5.15 12.55 -20.76 -0.26 4.89 16 16 N -0.48 -10.70 18.54 42.15 0.78 -9.91 16 17 C 0.03 0.74 4.42 -27.88 -0.12 0.62 16 18 C -0.53 -14.10 8.60 -34.44 -0.30 -14.39 16 19 H 0.06 1.54 7.59 -52.49 -0.40 1.14 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -25.56 13.29 55.43 0.74 -24.83 16 22 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.02 0.26 5.76 -7.55 -0.04 0.22 16 27 H 0.05 0.43 6.52 -51.93 -0.34 0.09 16 28 H 0.04 0.35 6.72 -51.93 -0.35 0.00 16 29 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.12 1.17 6.57 -52.48 -0.34 0.83 16 31 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 32 H 0.12 0.77 8.06 -52.48 -0.42 0.34 16 33 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.13 1.23 6.47 -52.49 -0.34 0.89 16 35 H 0.09 0.97 6.28 -51.93 -0.33 0.64 16 36 H 0.08 0.81 6.52 -51.93 -0.34 0.47 16 37 H 0.09 1.25 8.08 -51.93 -0.42 0.83 16 38 H 0.05 0.73 7.30 -51.93 -0.38 0.35 16 39 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.08 1.13 6.34 -51.93 -0.33 0.80 16 43 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 353.95 15.07 5.33 5.33 Total: -1.00 -31.12 353.95 -8.76 -39.89 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -6.08 Total: -1.13 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -2.65 Total: -13.17 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.00 Total: -42.69 kcal Atomic # 8 Polarization: -4.32 SS G_CDS: -0.34 Total: -4.67 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.12 -8.76 -39.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253417191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.549 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds