Wall clock time and date at job start Tue Mar 31 2020 04:21:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42896 * 114.00095 * 2 1 4 4 C 1.50703 * 113.25956 * 281.08883 * 3 2 1 5 5 C 1.38233 * 119.99776 * 177.51748 * 4 3 2 6 6 C 1.38240 * 119.99680 * 179.74468 * 5 4 3 7 7 C 1.38235 * 119.99751 * 0.52695 * 6 5 4 8 8 C 1.38232 * 120.00040 * 359.74348 * 7 6 5 9 9 C 1.38234 * 119.99670 * 357.78259 * 4 3 2 10 10 C 1.53510 * 114.16952 * 54.03943 * 3 2 1 11 11 N 1.47480 * 87.93497 * 87.62139 * 10 3 2 12 12 C 1.46900 * 111.00327 * 138.70164 * 11 10 3 13 13 C 1.53001 * 109.46937 * 170.00033 * 12 11 10 14 14 H 1.08997 * 109.47218 * 305.00234 * 13 12 11 15 15 C 1.47204 * 109.46943 * 65.00576 * 13 12 11 16 16 N 5.41548 * 149.64980 * 72.19197 * 2 1 3 17 17 C 1.53004 * 109.46836 * 185.00397 * 13 12 11 18 18 C 1.50701 * 109.47058 * 175.00128 * 17 13 12 19 19 H 1.07995 * 120.00069 * 0.02562 * 18 17 13 20 20 C 1.37874 * 119.99799 * 179.97438 * 18 17 13 21 21 N 1.31513 * 120.00219 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 119.99937 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47132 * 90.00028 * 22 20 18 24 24 H 1.48503 * 109.47106 * 210.00124 * 22 20 18 25 25 H 1.48501 * 109.46946 * 329.99939 * 22 20 18 26 26 C 1.47479 * 87.83418 * 27.01028 * 11 10 3 27 27 H 1.09000 * 109.46788 * 294.63622 * 1 2 3 28 28 H 1.08994 * 109.47683 * 54.63384 * 1 2 3 29 29 H 1.09004 * 109.47671 * 174.63729 * 1 2 3 30 30 H 1.08003 * 120.00437 * 359.97438 * 5 4 3 31 31 H 1.07998 * 120.00186 * 180.28761 * 6 5 4 32 32 H 1.08003 * 119.99457 * 179.77120 * 7 6 5 33 33 H 1.08001 * 119.99927 * 180.02562 * 8 7 6 34 34 H 1.07995 * 120.00468 * 0.02562 * 9 4 3 35 35 H 1.09001 * 113.47812 * 332.85763 * 10 3 2 36 36 H 1.08995 * 113.47984 * 202.38400 * 10 3 2 37 37 H 1.08998 * 109.46850 * 50.00567 * 12 11 10 38 38 H 1.08997 * 109.47286 * 290.00570 * 12 11 10 39 39 H 1.09002 * 109.46954 * 294.99860 * 17 13 12 40 40 H 1.08997 * 109.47713 * 54.99935 * 17 13 12 41 41 H 0.96999 * 119.99948 * 179.97438 * 21 20 18 42 42 H 1.08999 * 113.47602 * 87.75661 * 26 11 10 43 43 H 1.09000 * 113.47811 * 218.21999 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 2.0090 1.9574 -1.3587 5 6 2.4919 3.2440 -1.5083 6 6 2.4956 3.8401 -2.7556 7 6 2.0064 3.1536 -3.8512 8 6 1.5184 1.8691 -3.7005 9 6 1.5199 1.2708 -2.4543 10 6 1.5145 2.2141 1.1336 11 7 2.5844 1.6529 1.9794 12 6 3.2224 2.7015 2.7863 13 6 4.1450 2.0570 3.8228 14 1 3.5798 1.3368 4.4144 15 6 5.2497 1.3683 3.1356 16 7 6.1022 0.8369 2.6052 17 6 4.7127 3.1393 4.7433 18 6 5.5225 2.4937 5.8380 19 1 5.6226 1.4190 5.8735 20 6 6.1365 3.2751 6.7937 21 7 6.0158 4.5840 6.7497 22 14 7.1409 2.4749 8.1503 23 1 8.5525 2.3425 7.7087 24 1 7.0813 3.3164 9.3724 25 1 6.5872 1.1295 8.4482 26 6 3.3494 1.3972 0.7447 27 1 -0.3633 0.4284 0.9341 28 1 -0.3634 0.5948 -0.8380 29 1 -0.3634 -1.0232 -0.0960 30 1 2.8696 3.7821 -0.6515 31 1 2.8772 4.8435 -2.8734 32 1 2.0060 3.6207 -4.8249 33 1 1.1366 1.3326 -4.5565 34 1 1.1383 0.2674 -2.3365 35 1 0.5115 1.9669 1.4813 36 1 1.6388 3.2766 0.9244 37 1 2.4555 3.2851 3.2956 38 1 3.8053 3.3551 2.1375 39 1 5.3505 3.8090 4.1663 40 1 3.8938 3.7077 5.1841 41 1 6.4475 5.1337 7.4223 42 1 3.9634 2.2416 0.4316 43 1 3.9015 0.4575 0.7627 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253417191.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:55 Heat of formation + Delta-G solvation = 27.196060 kcal Electronic energy + Delta-G solvation = -23882.803095 eV Core-core repulsion = 20507.630444 eV Total energy + Delta-G solvation = -3375.172651 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.22491 -39.60867 -38.40936 -37.30056 -35.64775 -34.04588 -32.40296 -31.76469 -29.85894 -28.29001 -27.00917 -26.61181 -24.54513 -23.61756 -23.51837 -22.43383 -20.49577 -18.87579 -18.37288 -18.16391 -17.49118 -16.78455 -16.61535 -16.47174 -15.91435 -15.67677 -15.45487 -15.20675 -15.01559 -14.72047 -14.33916 -14.22511 -14.11681 -13.81938 -13.68649 -13.46507 -13.32954 -13.10579 -13.01874 -12.67505 -12.53098 -12.41196 -12.24890 -12.13037 -11.95848 -11.85011 -11.59355 -11.37531 -11.14421 -10.59597 -10.56083 -9.93133 -9.83179 -9.62772 -8.20533 -6.28400 0.34846 0.47913 1.38957 1.41120 1.50548 1.96458 2.01718 2.40563 2.51267 2.78165 2.93840 3.14565 3.25593 3.36742 3.56524 3.91317 4.00384 4.11909 4.14887 4.23148 4.27456 4.29757 4.42660 4.49790 4.55002 4.61284 4.62159 4.67463 4.71338 4.78959 4.89114 4.90676 4.93568 5.04583 5.13448 5.24326 5.45922 5.54250 5.58094 5.60896 5.61594 5.78376 5.91825 6.08198 6.20329 6.24003 6.77291 6.86713 7.39988 8.90299 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.025060 B = 0.003094 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1117.054758 B = 9048.672915 C = 9445.931213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.368 6.368 3 C 0.133 3.867 4 C -0.107 4.107 5 C -0.122 4.122 6 C -0.124 4.124 7 C -0.123 4.123 8 C -0.124 4.124 9 C -0.116 4.116 10 C -0.014 4.014 11 N -0.472 5.472 12 C 0.035 3.965 13 C 0.023 3.977 14 H 0.116 0.884 15 C 0.255 3.745 16 N -0.507 5.507 17 C 0.040 3.960 18 C -0.540 4.540 19 H 0.051 0.949 20 C 0.013 3.987 21 N -0.922 5.922 22 Si 0.946 3.054 23 H -0.284 1.284 24 H -0.276 1.276 25 H -0.266 1.266 26 C 0.013 3.987 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.141 0.859 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.127 0.873 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.002 0.998 40 H 0.038 0.962 41 H 0.265 0.735 42 H 0.085 0.915 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.031 -1.402 -19.887 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.287 6.287 3 C 0.092 3.908 4 C -0.108 4.108 5 C -0.140 4.140 6 C -0.142 4.142 7 C -0.141 4.141 8 C -0.142 4.142 9 C -0.134 4.134 10 C -0.142 4.142 11 N -0.193 5.193 12 C -0.095 4.095 13 C 0.001 3.999 14 H 0.134 0.866 15 C -0.061 4.061 16 N -0.184 5.184 17 C 0.001 3.999 18 C -0.578 4.578 19 H 0.069 0.931 20 C -0.186 4.186 21 N -0.562 5.562 22 Si 0.772 3.228 23 H -0.210 1.210 24 H -0.201 1.201 25 H -0.190 1.190 26 C -0.116 4.116 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.143 0.857 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.161 0.839 34 H 0.145 0.855 35 H 0.125 0.875 36 H 0.116 0.884 37 H 0.133 0.867 38 H 0.074 0.926 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.103 0.897 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.728 -2.754 -20.068 25.045 hybrid contribution 0.800 0.707 0.797 1.332 sum -13.928 -2.047 -19.271 23.866 Atomic orbital electron populations 1.23007 0.79364 1.03935 1.01157 1.87916 1.21600 1.24499 1.94659 1.21106 0.94833 0.84421 0.90451 1.20053 1.00940 0.95068 0.94749 1.21110 0.99948 0.94339 0.98638 1.21422 0.99466 1.00969 0.92319 1.21529 0.97915 0.94921 0.99702 1.21459 0.99633 0.95763 0.97372 1.21175 0.99471 1.00203 0.92525 1.24588 0.98753 0.99143 0.91707 1.68953 1.06751 1.32364 1.11274 1.22762 0.97745 0.93121 0.95849 1.19136 0.88419 0.97548 0.94756 0.86634 1.29596 0.93566 0.91721 0.91265 1.81002 1.12398 1.12068 1.12981 1.18989 0.95982 0.92450 0.92438 1.21540 1.31682 0.93191 1.11414 0.93119 1.25680 0.97454 0.95334 1.00125 1.70017 1.45061 1.04723 1.36357 0.85722 0.78884 0.78968 0.79195 1.20998 1.20145 1.19046 1.24096 0.95230 1.02114 0.90133 0.92903 0.92802 0.88094 0.85723 0.84088 0.83704 0.83917 0.85503 0.87479 0.88402 0.86693 0.92596 0.97923 0.94342 0.92654 0.89735 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.89 113.37 1.12 1.47 16 2 O -0.37 -9.07 9.78 -148.98 -1.46 -10.52 16 3 C 0.13 3.10 1.33 -11.19 -0.01 3.08 16 4 C -0.11 -2.26 5.23 -19.87 -0.10 -2.37 16 5 C -0.12 -2.36 8.45 22.27 0.19 -2.17 16 6 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 7 C -0.12 -1.80 10.05 22.27 0.22 -1.57 16 8 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 9 C -0.12 -2.22 8.49 22.27 0.19 -2.03 16 10 C -0.01 -0.28 6.59 83.57 0.55 0.27 16 11 N -0.47 -12.80 6.22 -928.30 -5.77 -18.57 16 12 C 0.03 0.99 4.36 86.30 0.38 1.36 16 13 C 0.02 0.87 2.42 -12.60 -0.03 0.84 16 14 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 15 C 0.25 10.74 12.55 89.44 1.12 11.86 16 16 N -0.51 -23.08 18.54 20.01 0.37 -22.71 16 17 C 0.04 1.86 4.42 29.85 0.13 2.00 16 18 C -0.54 -29.06 8.60 25.60 0.22 -28.84 16 19 H 0.05 2.74 7.59 -2.91 -0.02 2.71 16 20 C 0.01 0.73 5.46 84.65 0.46 1.19 16 21 N -0.92 -52.90 13.29 21.45 0.28 -52.62 16 22 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 24 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 26 C 0.01 0.37 5.76 83.57 0.48 0.86 16 27 H 0.05 0.83 6.52 -2.39 -0.02 0.82 16 28 H 0.05 0.78 6.72 -2.39 -0.02 0.76 16 29 H 0.10 1.37 8.14 -2.38 -0.02 1.35 16 30 H 0.12 2.24 6.57 -2.91 -0.02 2.22 16 31 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 33 H 0.14 1.53 8.06 -2.91 -0.02 1.50 16 34 H 0.13 2.34 6.47 -2.91 -0.02 2.32 16 35 H 0.11 1.96 6.28 -2.39 -0.01 1.95 16 36 H 0.10 1.73 6.52 -2.39 -0.02 1.71 16 37 H 0.11 2.81 8.08 -2.39 -0.02 2.79 16 38 H 0.06 1.54 7.30 -2.39 -0.02 1.53 16 39 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 40 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.08 2.31 6.34 -2.39 -0.02 2.30 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -66.45 353.95 1.83 -64.62 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 1.01 Total: 11.46 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 5.37 Total: -17.57 kcal Atomic # 7 Polarization: -88.79 SS G_CDS: -5.12 Total: -93.90 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.46 Total: -10.52 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -66.45 1.83 -64.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253417191.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.814 kcal (2) G-P(sol) polarization free energy of solvation -66.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds