Wall clock time and date at job start Tue Mar 31 2020 04:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47108 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46632 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47043 * 120.00041 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 196.88590 * 7 2 1 9 9 N 1.36936 * 119.99575 * 17.16731 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57104 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.50701 * 109.47460 * 314.30370 * 13 12 11 15 15 C 1.39869 * 126.03816 * 269.69460 * 14 13 12 16 16 N 1.30839 * 108.19876 * 179.81825 * 15 14 13 17 17 N 1.40078 * 108.20540 * 0.43595 * 16 15 14 18 18 C 1.46497 * 126.03948 * 179.69980 * 17 16 15 19 19 C 1.53007 * 109.47130 * 305.02614 * 18 17 16 20 20 F 1.39902 * 109.47253 * 174.99815 * 19 18 17 21 21 F 1.39902 * 109.46981 * 294.99726 * 19 18 17 22 22 C 1.34947 * 107.92703 * 359.71831 * 17 16 15 23 23 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 24 24 C 1.47086 * 120.87786 * 206.85386 * 9 7 2 25 25 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 27 27 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 28 28 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 29 29 H 1.08999 * 109.42005 * 173.94504 * 11 10 9 30 30 H 1.08997 * 109.46672 * 74.30687 * 13 12 11 31 31 H 1.09001 * 109.46912 * 194.30455 * 13 12 11 32 32 H 1.08001 * 125.90153 * 359.97438 * 15 14 13 33 33 H 1.09002 * 109.47429 * 65.02157 * 18 17 16 34 34 H 1.09000 * 109.48027 * 185.02468 * 18 17 16 35 35 H 1.08999 * 109.47247 * 54.99466 * 19 18 17 36 36 H 1.08004 * 126.12816 * 179.97438 * 22 17 16 37 37 H 1.09002 * 109.49046 * 303.14169 * 23 12 11 38 38 H 1.08999 * 109.49556 * 183.06363 * 23 12 11 39 39 H 1.08998 * 109.62919 * 350.89226 * 24 9 7 40 40 H 1.09003 * 109.62806 * 111.28045 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3614 -0.3511 10 6 0.2074 -2.3399 -1.2502 11 6 0.4530 -3.3517 -2.3807 12 7 0.7625 -4.6640 -1.7976 13 6 0.8317 -5.6990 -2.8378 14 6 -0.3442 -5.5547 -3.7692 15 6 -1.5881 -6.1783 -3.6269 16 7 -2.3479 -5.8070 -4.6252 17 7 -1.6071 -4.9420 -5.4409 18 6 -2.0796 -4.3014 -6.6708 19 6 -2.5945 -5.3700 -7.6372 20 9 -3.1498 -4.7522 -8.7629 21 9 -1.5335 -6.1919 -8.0321 22 6 -0.3813 -4.8035 -4.8940 23 6 2.0050 -4.6199 -1.0153 24 6 1.8270 -3.6607 0.1664 25 1 -0.4850 0.8401 -0.0004 26 1 -0.6890 -2.6165 -0.6952 27 1 0.0878 -1.3412 -1.6703 28 1 1.2904 -3.0196 -2.9943 29 1 -0.4421 -3.4299 -2.9977 30 1 1.7577 -5.5862 -3.4015 31 1 0.8075 -6.6843 -2.3721 32 1 -1.8731 -6.8483 -2.8292 33 1 -2.8862 -3.6080 -6.4326 34 1 -1.2578 -3.7568 -7.1357 35 1 -3.3554 -5.9724 -7.1409 36 1 0.4258 -4.2012 -5.2844 37 1 2.8209 -4.2701 -1.6479 38 1 2.2356 -5.6177 -0.6422 39 1 2.7785 -3.5357 0.6831 40 1 1.0847 -4.0603 0.8574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295274184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:54 Heat of formation + Delta-G solvation = 16.536225 kcal Electronic energy + Delta-G solvation = -24576.524455 eV Core-core repulsion = 20678.952780 eV Total energy + Delta-G solvation = -3897.571675 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.146 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.38262 -47.38849 -41.36704 -37.96058 -34.84609 -33.87875 -31.67577 -30.28896 -29.78515 -29.26871 -26.77149 -24.54693 -23.84382 -22.54681 -22.21457 -21.04799 -20.10309 -19.02149 -18.12922 -17.82956 -17.05252 -16.74114 -16.20553 -15.39890 -14.85871 -14.51133 -14.38227 -14.26982 -14.20808 -13.99589 -13.74735 -13.45944 -13.38070 -13.19199 -13.02870 -12.71189 -12.64921 -12.12975 -11.60733 -11.53994 -11.38073 -11.04591 -10.72068 -10.61163 -10.47412 -10.26702 -10.03609 -9.74362 -9.61957 -9.45284 -8.51125 -8.45857 -7.67647 -6.63322 -5.76089 -3.17209 1.72607 2.12801 2.77406 3.20491 3.38448 3.44174 3.45188 3.80253 4.01012 4.29617 4.50347 4.56890 4.66501 4.74659 4.93032 5.02463 5.25168 5.40238 5.44563 5.50097 5.74160 5.85643 5.95883 5.98551 6.16821 6.22470 6.31466 6.38833 6.57032 6.59890 6.75775 6.80136 6.97911 7.29062 7.57440 7.67471 7.70495 7.76586 7.86317 8.45876 9.23564 9.87346 10.46365 11.32424 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.018939 B = 0.003476 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.066798 B = 8054.056117 C = 9031.115368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.596 5.596 10 C 0.180 3.820 11 C 0.037 3.963 12 N -0.528 5.528 13 C 0.129 3.871 14 C -0.216 4.216 15 C 0.079 3.921 16 N -0.305 5.305 17 N -0.383 5.383 18 C 0.093 3.907 19 C 0.254 3.746 20 F -0.198 7.198 21 F -0.200 7.200 22 C 0.070 3.930 23 C 0.045 3.955 24 C 0.149 3.851 25 H 0.254 0.746 26 H 0.024 0.976 27 H 0.085 0.915 28 H 0.019 0.981 29 H 0.062 0.938 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.172 0.828 37 H 0.026 0.974 38 H 0.062 0.938 39 H 0.054 0.946 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.114 -12.098 -13.578 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.319 5.319 10 C 0.054 3.946 11 C -0.092 4.092 12 N -0.254 5.254 13 C 0.000 4.000 14 C -0.227 4.227 15 C -0.108 4.108 16 N -0.126 5.126 17 N -0.165 5.165 18 C -0.031 4.031 19 C 0.200 3.800 20 F -0.179 7.179 21 F -0.181 7.181 22 C -0.075 4.075 23 C -0.084 4.084 24 C 0.022 3.978 25 H 0.064 0.936 26 H 0.042 0.958 27 H 0.103 0.897 28 H 0.037 0.963 29 H 0.081 0.919 30 H 0.049 0.951 31 H 0.095 0.905 32 H 0.203 0.797 33 H 0.135 0.865 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.189 0.811 37 H 0.045 0.955 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.775 -12.087 -13.948 19.064 hybrid contribution 1.905 1.281 -0.335 2.320 sum -2.870 -10.805 -14.283 18.138 Atomic orbital electron populations 1.70028 1.05200 1.25489 1.54095 1.25014 0.95271 0.98287 1.01122 0.86387 0.78905 0.83500 0.78084 1.21174 1.21638 1.20879 1.19160 0.92539 0.84916 1.41550 0.91739 1.44151 1.34416 1.01256 1.52108 1.20933 0.88853 0.96449 0.88401 1.22995 0.98477 0.89269 0.98487 1.62085 1.34337 1.05857 1.23084 1.20398 0.92372 0.96634 0.90554 1.19995 0.98322 1.05569 0.98849 1.23806 0.91559 0.98928 0.96469 1.77274 1.19476 1.10205 1.05622 1.48063 1.10197 1.38399 1.19878 1.22570 1.04156 0.94232 0.82128 1.22158 0.86443 0.88757 0.82674 1.93014 1.85693 1.84145 1.55089 1.93019 1.59220 1.73828 1.92030 1.22367 0.88847 1.00639 0.95679 1.22610 0.89604 0.99350 0.96862 1.20969 0.97708 0.86519 0.92618 0.93637 0.95754 0.89713 0.96284 0.91927 0.95093 0.90453 0.79665 0.86511 0.86384 0.85867 0.81114 0.95539 0.91995 0.92736 0.95697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 11.16 55.49 0.62 -25.79 16 2 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 3 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 4 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.97 9.63 -15.06 -0.15 -7.12 16 8 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.60 -15.20 3.03 -171.73 -0.52 -15.72 16 10 C 0.18 4.39 5.45 -3.36 -0.02 4.37 16 11 C 0.04 0.72 4.97 -3.47 -0.02 0.70 16 12 N -0.53 -9.22 4.77 -235.48 -1.12 -10.34 16 13 C 0.13 1.78 5.76 -4.98 -0.03 1.75 16 14 C -0.22 -2.86 4.25 -105.05 -0.45 -3.31 16 15 C 0.08 1.02 11.96 -17.36 -0.21 0.81 16 16 N -0.31 -4.01 12.34 30.62 0.38 -3.63 16 17 N -0.38 -4.44 3.66 -61.36 -0.22 -4.66 16 18 C 0.09 0.76 6.70 -4.04 -0.03 0.73 16 19 C 0.25 2.15 5.43 37.16 0.20 2.35 16 20 F -0.20 -1.78 17.34 2.25 0.04 -1.74 16 21 F -0.20 -2.16 17.32 2.25 0.04 -2.12 16 22 C 0.07 0.85 9.69 -17.23 -0.17 0.68 16 23 C 0.05 0.80 5.58 -3.71 -0.02 0.78 16 24 C 0.15 3.16 6.69 -3.60 -0.02 3.14 16 25 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 2.29 6.12 -51.93 -0.32 1.97 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 1.15 5.56 -51.93 -0.29 0.87 16 30 H 0.03 0.41 8.08 -51.93 -0.42 0.00 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.19 1.96 8.06 -52.49 -0.42 1.54 16 33 H 0.12 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.12 0.74 8.07 -51.93 -0.42 0.32 16 35 H 0.12 0.95 8.05 -51.93 -0.42 0.54 16 36 H 0.17 1.76 8.06 -52.48 -0.42 1.33 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 39 H 0.05 1.11 7.95 -51.93 -0.41 0.70 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 334.67 15.07 5.04 5.04 Total: -1.00 -32.19 334.67 -7.39 -39.58 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -5.63 Total: -2.10 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: -0.99 Total: 4.83 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.87 Total: -60.15 kcal Atomic # 9 Polarization: -3.94 SS G_CDS: 0.08 Total: -3.86 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.19 -7.39 -39.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295274184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.119 kcal (2) G-P(sol) polarization free energy of solvation -32.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds