Wall clock time and date at job start Tue Mar 31 2020 04:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86810 * 120.00146 * 2 1 4 4 H 1.48494 * 109.47108 * 240.00195 * 3 2 1 5 5 H 1.48503 * 109.46632 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47043 * 120.00041 * 3 2 1 7 7 C 1.38813 * 120.00290 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00062 * 196.88590 * 7 2 1 9 9 N 1.36936 * 119.99575 * 17.16731 * 7 2 1 10 10 C 1.47083 * 120.88318 * 26.57104 * 9 7 2 11 11 C 1.53690 * 108.27346 * 128.75954 * 10 9 7 12 12 N 1.46900 * 109.26152 * 54.08029 * 11 10 9 13 13 C 1.46900 * 110.99950 * 172.60364 * 12 11 10 14 14 C 1.50701 * 109.47460 * 314.30370 * 13 12 11 15 15 C 1.39869 * 126.03816 * 269.69460 * 14 13 12 16 16 N 1.30839 * 108.19876 * 179.81825 * 15 14 13 17 17 N 1.40078 * 108.20540 * 0.43595 * 16 15 14 18 18 C 1.46497 * 126.03948 * 179.69980 * 17 16 15 19 19 C 1.53007 * 109.47130 * 305.02614 * 18 17 16 20 20 F 1.39902 * 109.47253 * 174.99815 * 19 18 17 21 21 F 1.39902 * 109.46981 * 294.99726 * 19 18 17 22 22 C 1.34947 * 107.92703 * 359.71831 * 17 16 15 23 23 C 1.46891 * 111.26969 * 296.75956 * 12 11 10 24 24 C 1.47086 * 120.87786 * 206.85386 * 9 7 2 25 25 H 0.97001 * 119.99757 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.62320 * 248.52708 * 10 9 7 27 27 H 1.08997 * 109.62861 * 9.10408 * 10 9 7 28 28 H 1.09000 * 109.64823 * 294.07489 * 11 10 9 29 29 H 1.08999 * 109.42005 * 173.94504 * 11 10 9 30 30 H 1.08997 * 109.46672 * 74.30687 * 13 12 11 31 31 H 1.09001 * 109.46912 * 194.30455 * 13 12 11 32 32 H 1.08001 * 125.90153 * 359.97438 * 15 14 13 33 33 H 1.09002 * 109.47429 * 65.02157 * 18 17 16 34 34 H 1.09000 * 109.48027 * 185.02468 * 18 17 16 35 35 H 1.08999 * 109.47247 * 54.99466 * 19 18 17 36 36 H 1.08004 * 126.12816 * 179.97438 * 22 17 16 37 37 H 1.09002 * 109.49046 * 303.14169 * 23 12 11 38 38 H 1.08999 * 109.49556 * 183.06363 * 23 12 11 39 39 H 1.08998 * 109.62919 * 350.89226 * 24 9 7 40 40 H 1.09003 * 109.62806 * 111.28045 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2711 9 7 1.3713 -2.3614 -0.3511 10 6 0.2074 -2.3399 -1.2502 11 6 0.4530 -3.3517 -2.3807 12 7 0.7625 -4.6640 -1.7976 13 6 0.8317 -5.6990 -2.8378 14 6 -0.3442 -5.5547 -3.7692 15 6 -1.5881 -6.1783 -3.6269 16 7 -2.3479 -5.8070 -4.6252 17 7 -1.6071 -4.9420 -5.4409 18 6 -2.0796 -4.3014 -6.6708 19 6 -2.5945 -5.3700 -7.6372 20 9 -3.1498 -4.7522 -8.7629 21 9 -1.5335 -6.1919 -8.0321 22 6 -0.3813 -4.8035 -4.8940 23 6 2.0050 -4.6199 -1.0153 24 6 1.8270 -3.6607 0.1664 25 1 -0.4850 0.8401 -0.0004 26 1 -0.6890 -2.6165 -0.6952 27 1 0.0878 -1.3412 -1.6703 28 1 1.2904 -3.0196 -2.9943 29 1 -0.4421 -3.4299 -2.9977 30 1 1.7577 -5.5862 -3.4015 31 1 0.8075 -6.6843 -2.3721 32 1 -1.8731 -6.8483 -2.8292 33 1 -2.8862 -3.6080 -6.4326 34 1 -1.2578 -3.7568 -7.1357 35 1 -3.3554 -5.9724 -7.1409 36 1 0.4258 -4.2012 -5.2844 37 1 2.8209 -4.2701 -1.6479 38 1 2.2356 -5.6177 -0.6422 39 1 2.7785 -3.5357 0.6831 40 1 1.0847 -4.0603 0.8574 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295274184.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:15:54 Heat of formation + Delta-G solvation = -4.517221 kcal Electronic energy + Delta-G solvation = -24577.437400 eV Core-core repulsion = 20678.952780 eV Total energy + Delta-G solvation = -3898.484621 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.10732 -48.12490 -42.29187 -39.49404 -36.37936 -34.92631 -33.39928 -31.68359 -31.29978 -30.27288 -28.29107 -26.02134 -24.71729 -24.19456 -23.79267 -21.93610 -21.12344 -20.67646 -18.92517 -18.67564 -18.51929 -17.80743 -17.10798 -16.96597 -16.30112 -15.81409 -15.65613 -15.46968 -15.24331 -15.15056 -14.94377 -14.76595 -14.71272 -14.48916 -14.22611 -13.83911 -13.56526 -13.29323 -13.13220 -12.96827 -12.75003 -12.56135 -12.34795 -12.24563 -12.01336 -11.84025 -11.62106 -11.49950 -11.36026 -10.56684 -10.41507 -9.50172 -9.04274 -8.63984 -7.85951 -5.30938 0.81878 1.33929 1.47091 1.49043 1.56220 1.79614 2.51912 2.52209 3.15273 3.24951 3.32502 3.38923 3.59248 3.73754 3.82317 3.93505 4.21488 4.24551 4.31619 4.37966 4.43269 4.50961 4.66127 4.67705 4.74466 4.86111 4.93321 4.96587 5.08169 5.24592 5.26336 5.40481 5.62343 5.66062 5.70298 5.93612 6.29252 6.39127 6.41362 6.65423 7.14790 7.86401 8.40819 9.20318 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.018939 B = 0.003476 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.066798 B = 8054.056117 C = 9031.115368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.265 4.265 8 H 0.068 0.932 9 N -0.615 5.615 10 C 0.188 3.812 11 C 0.062 3.938 12 N -0.540 5.540 13 C 0.136 3.864 14 C -0.236 4.236 15 C 0.070 3.930 16 N -0.325 5.325 17 N -0.382 5.382 18 C 0.087 3.913 19 C 0.259 3.741 20 F -0.200 7.200 21 F -0.213 7.213 22 C 0.069 3.931 23 C 0.057 3.943 24 C 0.142 3.858 25 H 0.249 0.751 26 H -0.010 1.010 27 H 0.052 0.948 28 H 0.017 0.983 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.097 0.903 32 H 0.201 0.799 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.130 0.870 36 H 0.190 0.810 37 H 0.025 0.975 38 H 0.098 0.902 39 H 0.060 0.940 40 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.070 -12.874 -14.623 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.395 4.395 8 H 0.086 0.914 9 N -0.339 5.339 10 C 0.062 3.938 11 C -0.068 4.068 12 N -0.265 5.265 13 C 0.008 3.992 14 C -0.248 4.248 15 C -0.116 4.116 16 N -0.145 5.145 17 N -0.164 5.164 18 C -0.035 4.035 19 C 0.205 3.795 20 F -0.182 7.182 21 F -0.195 7.195 22 C -0.077 4.077 23 C -0.072 4.072 24 C 0.017 3.983 25 H 0.058 0.942 26 H 0.008 0.992 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.218 0.782 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.207 0.793 37 H 0.043 0.957 38 H 0.116 0.884 39 H 0.078 0.922 40 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -3.722 -12.901 -15.008 20.138 hybrid contribution 1.545 1.472 -0.004 2.134 sum -2.177 -11.429 -15.012 18.993 Atomic orbital electron populations 1.70201 1.06732 1.25837 1.55542 1.25793 0.96013 1.01491 1.01334 0.85335 0.77543 0.79159 0.78378 1.20344 1.22051 1.20081 1.19531 0.92930 0.86107 1.40965 0.91408 1.44448 1.34426 1.02247 1.52785 1.20682 0.87550 0.96279 0.89329 1.22553 0.98862 0.89234 0.96135 1.62009 1.34466 1.05383 1.24632 1.20403 0.93052 0.95883 0.89826 1.20057 0.98467 1.06751 0.99515 1.24130 0.91508 0.99143 0.96809 1.77232 1.20184 1.10969 1.06154 1.48296 1.09937 1.37864 1.20335 1.22844 1.05562 0.94161 0.80979 1.22194 0.86155 0.88723 0.82466 1.93009 1.85684 1.84185 1.55295 1.92992 1.59959 1.74338 1.92195 1.22714 0.89380 1.00169 0.95456 1.22449 0.89552 0.99963 0.95281 1.21150 0.97332 0.85580 0.94256 0.94168 0.99199 0.92985 0.96452 0.90919 0.94087 0.88497 0.78227 0.85099 0.84302 0.85256 0.79349 0.95673 0.88411 0.92194 0.96848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.31 11.16 21.65 0.24 -56.07 16 2 C -0.05 -2.88 4.93 84.86 0.42 -2.47 16 3 Si 0.97 44.92 29.59 68.60 2.03 46.94 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.27 -14.80 9.63 84.03 0.81 -13.99 16 8 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 9 N -0.61 -31.70 3.03 -697.24 -2.11 -33.81 16 10 C 0.19 9.39 5.45 86.50 0.47 9.86 16 11 C 0.06 2.34 4.97 86.54 0.43 2.77 16 12 N -0.54 -17.76 4.77 -898.92 -4.29 -22.05 16 13 C 0.14 3.34 5.76 85.56 0.49 3.83 16 14 C -0.24 -5.74 4.25 -20.14 -0.09 -5.83 16 15 C 0.07 1.69 11.96 85.24 1.02 2.71 16 16 N -0.32 -8.06 12.34 -57.02 -0.70 -8.76 16 17 N -0.38 -8.13 3.66 -348.05 -1.27 -9.41 16 18 C 0.09 1.24 6.70 86.38 0.58 1.82 16 19 C 0.26 3.97 5.43 71.98 0.39 4.36 16 20 F -0.20 -3.30 17.34 44.97 0.78 -2.52 16 21 F -0.21 -4.32 17.32 44.97 0.78 -3.54 16 22 C 0.07 1.53 9.69 83.54 0.81 2.34 16 23 C 0.06 1.86 5.58 86.38 0.48 2.35 16 24 C 0.14 5.98 6.69 86.35 0.58 6.56 16 25 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 26 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 27 H 0.05 2.91 6.12 -2.39 -0.01 2.90 16 28 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 2.61 5.56 -2.39 -0.01 2.60 16 30 H 0.04 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.20 3.91 8.06 -2.91 -0.02 3.88 16 33 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.14 1.40 8.07 -2.39 -0.02 1.38 16 35 H 0.13 1.83 8.05 -2.39 -0.02 1.81 16 36 H 0.19 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.10 2.55 8.11 -2.39 -0.02 2.53 16 39 H 0.06 2.40 7.95 -2.39 -0.02 2.38 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -70.02 334.67 2.88 -67.13 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: 1.04 Total: 7.76 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 6.39 Total: 14.32 kcal Atomic # 7 Polarization: -121.96 SS G_CDS: -8.14 Total: -130.10 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 1.56 Total: -6.06 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.02 2.88 -67.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295274184.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.616 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds